scaffold11235 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold11235 |
668 |
785 |
+ |
RS5782 |
Unspecified |
scaffold11235 |
1163 |
1195 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
1329 |
1389 |
+ |
(GCCCG)n |
Simple_repeat |
scaffold11235 |
1654 |
1696 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
1942 |
1994 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
2170 |
2203 |
+ |
(ACT)n |
Simple_repeat |
scaffold11235 |
2498 |
2526 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
2730 |
2906 |
+ |
RS1127 |
Unspecified |
scaffold11235 |
3035 |
3143 |
- |
ATRAN |
DNA? |
scaffold11235 |
3517 |
3625 |
- |
ATRAN |
DNA? |
scaffold11235 |
3685 |
3824 |
+ |
RS908 |
Unspecified |
scaffold11235 |
6587 |
6646 |
+ |
(TATAATT)n |
Simple_repeat |
scaffold11235 |
7276 |
7342 |
+ |
(CA)n |
Simple_repeat |
scaffold11235 |
7486 |
7715 |
+ |
RS4308 |
Unspecified |
scaffold11235 |
8272 |
8296 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
8787 |
8808 |
+ |
(GTT)n |
Simple_repeat |
scaffold11235 |
10402 |
10544 |
- |
RS115 |
Unspecified |
scaffold11235 |
11137 |
11156 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
11660 |
11792 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
scaffold11235 |
11897 |
11980 |
- |
RS5812 |
Unspecified |
scaffold11235 |
12614 |
12645 |
+ |
(TTC)n |
Simple_repeat |
scaffold11235 |
15934 |
15968 |
+ |
(TTTA)n |
Simple_repeat |
scaffold11235 |
16234 |
16314 |
+ |
PL517 |
Unspecified |
scaffold11235 |
16279 |
16345 |
+ |
PL517 |
Unspecified |
scaffold11235 |
16910 |
16933 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
20863 |
20886 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
21299 |
21320 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
21654 |
21821 |
+ |
RS79 |
Unspecified |
scaffold11235 |
21934 |
21967 |
+ |
(TCT)n |
Simple_repeat |
scaffold11235 |
21986 |
22061 |
+ |
(ATCA)n |
Simple_repeat |
scaffold11235 |
24910 |
25073 |
+ |
(CCCGA)n |
Simple_repeat |
scaffold11235 |
25232 |
25409 |
+ |
(CCCGA)n |
Simple_repeat |
scaffold11235 |
26333 |
26385 |
+ |
(TTTCC)n |
Simple_repeat |
scaffold11235 |
27354 |
27384 |
+ |
(TTCA)n |
Simple_repeat |
scaffold11235 |
27445 |
27479 |
+ |
(TAA)n |
Simple_repeat |
scaffold11235 |
27549 |
27613 |
+ |
RS13929 |
Unspecified |
scaffold11235 |
27556 |
27613 |
+ |
RS12885 |
Unspecified |
scaffold11235 |
28745 |
28820 |
+ |
(TAAT)n |
Simple_repeat |
scaffold11235 |
29145 |
29203 |
+ |
(ATT)n |
Simple_repeat |
scaffold11235 |
29482 |
29504 |
+ |
(TCC)n |
Simple_repeat |
scaffold11235 |
29545 |
29580 |
+ |
(GTG)n |
Simple_repeat |
scaffold11235 |
29996 |
30099 |
+ |
RS4475 |
Unspecified |
scaffold11235 |
30221 |
30253 |
+ |
(AAGATAA)n |
Simple_repeat |
scaffold11235 |
30254 |
30294 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
30606 |
30644 |
+ |
(TATTTTT)n |
Simple_repeat |
scaffold11235 |
31165 |
31188 |
+ |
(ATTT)n |
Simple_repeat |
scaffold11235 |
31324 |
31342 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
31571 |
31813 |
+ |
RS114 |
Unspecified |
scaffold11235 |
31950 |
32010 |
- |
PIGY-I_PS |
LTR/Gypsy |
scaffold11235 |
32446 |
32477 |
+ |
(ACATT)n |
Simple_repeat |
scaffold11235 |
33420 |
33464 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
33482 |
33526 |
+ |
(CAC)n |
Simple_repeat |
scaffold11235 |
33553 |
33767 |
+ |
(TCGGG)n |
Simple_repeat |
scaffold11235 |
33930 |
34104 |
+ |
(TCGGG)n |
Simple_repeat |
scaffold11235 |
35027 |
35129 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
36058 |
36102 |
+ |
(CAC)n |
Simple_repeat |
scaffold11235 |
36788 |
36846 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
37172 |
37370 |
+ |
RS11086 |
Unspecified |
scaffold11235 |
39026 |
39054 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
39055 |
39077 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
40224 |
40329 |
- |
RS5023 |
Unspecified |
scaffold11235 |
40603 |
40689 |
+ |
RTE-1_GM |
LINE/RTE-BovB |
scaffold11235 |
42304 |
42571 |
- |
RS17600 |
Unspecified |
scaffold11235 |
42774 |
42808 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
44716 |
44738 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
49687 |
49795 |
- |
RS972 |
Unspecified |
scaffold11235 |
50155 |
50201 |
+ |
ATRAN |
DNA? |
scaffold11235 |
50648 |
50681 |
+ |
(AGAACTT)n |
Simple_repeat |
scaffold11235 |
51321 |
51342 |
+ |
(ATA)n |
Simple_repeat |
scaffold11235 |
51494 |
51521 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
52194 |
52375 |
- |
RS1347 |
Unspecified |
scaffold11235 |
52439 |
52518 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold11235 |
52543 |
52671 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold11235 |
53315 |
53338 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
53350 |
53632 |
+ |
RS580 |
Unspecified |
scaffold11235 |
54269 |
54419 |
- |
RS2902 |
Unspecified |
scaffold11235 |
54433 |
54481 |
+ |
(ATTTTAA)n |
Simple_repeat |
scaffold11235 |
55177 |
55351 |
- |
RS2464 |
Unspecified |
scaffold11235 |
55355 |
55560 |
+ |
RS805 |
Unspecified |
scaffold11235 |
55679 |
55695 |
+ |
(TA)n |
Simple_repeat |
scaffold11235 |
58776 |
58878 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold11235 |
59315 |
59710 |
- |
Copia-2_SL-LTR |
LTR/Copia |
scaffold11235 |
60155 |
60234 |
+ |
RS13929 |
Unspecified |
scaffold11235 |
60754 |
60861 |
+ |
G-rich |
Low_complexity |
scaffold11235 |
60859 |
60892 |
+ |
(TGG)n |
Simple_repeat |
scaffold11235 |
60924 |
61003 |
- |
RS13929 |
Unspecified |
scaffold11235 |
61961 |
61978 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
62163 |
62194 |
+ |
(TTTA)n |
Simple_repeat |
scaffold11235 |
62845 |
62952 |
+ |
RS1347 |
Unspecified |
scaffold11235 |
63807 |
63887 |
- |
RS1829 |
Unspecified |
scaffold11235 |
63827 |
63897 |
+ |
RS209 |
Unspecified |
scaffold11235 |
64603 |
64630 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
66133 |
66149 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
69406 |
69497 |
- |
LTR-7_Mad-LTR |
LTR |
scaffold11235 |
69923 |
69970 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
70808 |
71004 |
+ |
(AGCTG)n |
Simple_repeat |
scaffold11235 |
72670 |
72819 |
+ |
RS5561 |
Unspecified |
scaffold11235 |
73506 |
73538 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
73824 |
73852 |
+ |
(TTCTT)n |
Simple_repeat |
scaffold11235 |
73891 |
73950 |
+ |
(TCT)n |
Simple_repeat |
scaffold11235 |
74722 |
74813 |
+ |
(CTGAA)n |
Simple_repeat |
scaffold11235 |
74826 |
74907 |
+ |
(ATT)n |
Simple_repeat |
scaffold11235 |
75846 |
75960 |
+ |
(TAA)n |
Simple_repeat |
scaffold11235 |
75979 |
76119 |
+ |
(AGCTG)n |
Simple_repeat |
scaffold11235 |
76178 |
76267 |
+ |
(CTGAA)n |
Simple_repeat |
scaffold11235 |
76525 |
76552 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
78319 |
78346 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
79613 |
79651 |
- |
RS1340 |
Unspecified |
scaffold11235 |
79651 |
79727 |
- |
RS1340 |
Unspecified |
scaffold11235 |
80352 |
80381 |
+ |
(GTAGAA)n |
Simple_repeat |
scaffold11235 |
81471 |
81851 |
- |
RS29 |
Unspecified |
scaffold11235 |
81903 |
82036 |
- |
RS1328 |
Unspecified |
scaffold11235 |
82504 |
82602 |
- |
RS4475 |
Unspecified |
scaffold11235 |
84749 |
84845 |
- |
RS4475 |
Unspecified |
scaffold11235 |
85034 |
85072 |
+ |
(TTTTTTA)n |
Simple_repeat |
scaffold11235 |
89581 |
89626 |
+ |
(ATT)n |
Simple_repeat |
scaffold11235 |
90451 |
90540 |
+ |
(CCACCG)n |
Simple_repeat |
scaffold11235 |
91072 |
91136 |
+ |
(AATGA)n |
Simple_repeat |
scaffold11235 |
91245 |
91303 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
91597 |
91829 |
- |
RS10268 |
Unspecified |
scaffold11235 |
92025 |
92060 |
+ |
(TAAAAA)n |
Simple_repeat |
scaffold11235 |
93111 |
93143 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
93142 |
93230 |
+ |
PL856 |
Unspecified |
scaffold11235 |
93142 |
93219 |
- |
RS25 |
Unspecified |
scaffold11235 |
93802 |
94416 |
- |
MUDRAVI1 |
DNA/MULE-MuDR |
scaffold11235 |
94262 |
94416 |
- |
MUDRAVI1 |
DNA/MULE-MuDR |
scaffold11235 |
94289 |
94428 |
+ |
(TAA)n |
Simple_repeat |
scaffold11235 |
94429 |
94553 |
+ |
(AAC)n |
Simple_repeat |
scaffold11235 |
94554 |
94598 |
+ |
(TAA)n |
Simple_repeat |
scaffold11235 |
94597 |
94865 |
- |
PL206 |
Unspecified |
scaffold11235 |
95508 |
95544 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
96504 |
96663 |
- |
ATENSPM1 |
DNA/CMC-EnSpm |
scaffold11235 |
96683 |
96704 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
96843 |
96956 |
+ |
EnSpm2_PTr |
DNA/CMC-EnSpm |
scaffold11235 |
97089 |
97172 |
- |
ATENSPM1 |
DNA/CMC-EnSpm |
scaffold11235 |
97771 |
97889 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
98134 |
98251 |
- |
PL270 |
Unspecified |
scaffold11235 |
98248 |
98285 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
98697 |
98730 |
+ |
(AATT)n |
Simple_repeat |
scaffold11235 |
98884 |
99110 |
- |
PL375 |
Unspecified |
scaffold11235 |
99558 |
99621 |
+ |
(ATATTA)n |
Simple_repeat |
scaffold11235 |
99624 |
99822 |
+ |
RS631 |
Unspecified |
scaffold11235 |
99837 |
99951 |
- |
RS525 |
Unspecified |
scaffold11235 |
99966 |
100114 |
+ |
RS94 |
Unspecified |
scaffold11235 |
100215 |
100285 |
+ |
(ATT)n |
Simple_repeat |
scaffold11235 |
100472 |
100569 |
+ |
(CCA)n |
Simple_repeat |
scaffold11235 |
101292 |
101574 |
+ |
(CTGAA)n |
Simple_repeat |
scaffold11235 |
101805 |
101836 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
102463 |
102630 |
- |
PL700 |
Unspecified |
scaffold11235 |
108605 |
108705 |
+ |
GA-rich |
Low_complexity |
scaffold11235 |
108816 |
108859 |
+ |
(TATTTT)n |
Simple_repeat |
scaffold11235 |
108908 |
108958 |
- |
RS10 |
Unspecified |
scaffold11235 |
108956 |
109088 |
- |
TRAMET1 |
DNA/TcMar-Stowaway |
scaffold11235 |
109178 |
109231 |
+ |
(TAAT)n |
Simple_repeat |
scaffold11235 |
109475 |
109600 |
+ |
RS6915 |
Unspecified |
scaffold11235 |
109633 |
109775 |
+ |
RS4046 |
Unspecified |
scaffold11235 |
109665 |
109789 |
+ |
RS9721 |
Unspecified |
scaffold11235 |
111200 |
111308 |
- |
PL637 |
Unspecified |
scaffold11235 |
112458 |
112495 |
+ |
(TATTTT)n |
Simple_repeat |
scaffold11235 |
112853 |
112886 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
113340 |
113382 |
- |
RS285 |
Unspecified |
scaffold11235 |
113739 |
113788 |
- |
LT1_EPa |
LTR? |
scaffold11235 |
113974 |
114133 |
+ |
RS4 |
Unspecified |
scaffold11235 |
114279 |
114349 |
+ |
RS987 |
Unspecified |
scaffold11235 |
114291 |
114432 |
+ |
RS115 |
Unspecified |
scaffold11235 |
114437 |
114459 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
114704 |
114756 |
+ |
(TTCCC)n |
Simple_repeat |
scaffold11235 |
115110 |
115212 |
- |
PL523 |
Unspecified |
scaffold11235 |
115122 |
115421 |
+ |
PL689 |
Unspecified |
scaffold11235 |
115419 |
115604 |
- |
RS4961 |
Unspecified |
scaffold11235 |
115620 |
115667 |
+ |
RS1793 |
Unspecified |
scaffold11235 |
115726 |
115767 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
115993 |
116032 |
+ |
(AATGTGA)n |
Simple_repeat |
scaffold11235 |
116604 |
116645 |
+ |
(TTTTA)n |
Simple_repeat |
scaffold11235 |
117155 |
117218 |
+ |
(TTAAT)n |
Simple_repeat |
scaffold11235 |
118124 |
118258 |
- |
PL517 |
Unspecified |
scaffold11235 |
118353 |
118429 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold11235 |
118457 |
118542 |
+ |
(ATTCAGCTCG)n |
Simple_repeat |
scaffold11235 |
121073 |
121441 |
- |
PL436 |
Unspecified |
scaffold11235 |
121753 |
121781 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
121880 |
121927 |
+ |
RS93 |
Unspecified |
scaffold11235 |
123788 |
123839 |
- |
PL439 |
Unspecified |
scaffold11235 |
123839 |
124039 |
+ |
RS477 |
Unspecified |
scaffold11235 |
124079 |
124133 |
- |
RS477 |
Unspecified |
scaffold11235 |
125384 |
125425 |
+ |
(TTTTATG)n |
Simple_repeat |
scaffold11235 |
127637 |
127736 |
- |
RS750 |
Unspecified |
scaffold11235 |
127990 |
128015 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
128151 |
128298 |
+ |
SETARIA1 |
DNA/MULE-MuDR |
scaffold11235 |
128814 |
128845 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
131031 |
131104 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
132264 |
132298 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
132299 |
132336 |
+ |
(TTG)n |
Simple_repeat |
scaffold11235 |
135160 |
135199 |
+ |
(TTTTA)n |
Simple_repeat |
scaffold11235 |
135614 |
135677 |
+ |
(TTAAT)n |
Simple_repeat |
scaffold11235 |
141194 |
141226 |
+ |
(TTG)n |
Simple_repeat |
scaffold11235 |
141309 |
141339 |
+ |
(GTTTT)n |
Simple_repeat |
scaffold11235 |
145914 |
145947 |
+ |
(AATAA)n |
Simple_repeat |
scaffold11235 |
146922 |
147007 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
151739 |
151852 |
+ |
(AACA)n |
Simple_repeat |
scaffold11235 |
151806 |
151852 |
+ |
(AACA)n |
Simple_repeat |
scaffold11235 |
152205 |
152247 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
155844 |
155932 |
+ |
RS2386 |
Unspecified |
scaffold11235 |
155925 |
156013 |
+ |
RS2386 |
Unspecified |
scaffold11235 |
156302 |
156497 |
- |
RS4 |
Unspecified |
scaffold11235 |
157428 |
157463 |
+ |
GA-rich |
Low_complexity |
scaffold11235 |
157728 |
157751 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
158001 |
158037 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
158193 |
158214 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
158863 |
158915 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
160190 |
160362 |
- |
RS17860 |
Unspecified |
scaffold11235 |
161273 |
161294 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
161778 |
161830 |
+ |
(AATCT)n |
Simple_repeat |
scaffold11235 |
162083 |
162250 |
+ |
(AACTG)n |
Simple_repeat |
scaffold11235 |
162326 |
162356 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
167447 |
167466 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
170788 |
170833 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
170971 |
170995 |
+ |
(AAAT)n |
Simple_repeat |
scaffold11235 |
171000 |
171040 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
171037 |
171153 |
+ |
PL271 |
Unspecified |
scaffold11235 |
171293 |
171624 |
+ |
RS5090 |
Unspecified |
scaffold11235 |
171973 |
172002 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
172018 |
172643 |
- |
RS1779 |
Unspecified |
scaffold11235 |
173051 |
173098 |
+ |
(CAAGAC)n |
Simple_repeat |
scaffold11235 |
173246 |
173294 |
+ |
(TTTCCTT)n |
Simple_repeat |
scaffold11235 |
176941 |
176975 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
177193 |
177237 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
177285 |
177698 |
+ |
RS338 |
Unspecified |
scaffold11235 |
177737 |
177878 |
- |
TRAMET1 |
DNA/TcMar-Stowaway |
scaffold11235 |
177954 |
177993 |
- |
PL75 |
Unspecified |
scaffold11235 |
179690 |
179801 |
- |
RS285 |
Unspecified |
scaffold11235 |
179923 |
179983 |
- |
PIGY-I_PS |
LTR/Gypsy |
scaffold11235 |
180433 |
180816 |
+ |
PL436 |
Unspecified |
scaffold11235 |
180850 |
180881 |
+ |
(TTTTGT)n |
Simple_repeat |
scaffold11235 |
181136 |
181312 |
- |
RS233 |
Unspecified |
scaffold11235 |
181155 |
181318 |
+ |
RS2719 |
Unspecified |
scaffold11235 |
181370 |
181404 |
+ |
(ATTT)n |
Simple_repeat |
scaffold11235 |
181729 |
181780 |
+ |
(TTCAA)n |
Simple_repeat |
scaffold11235 |
181799 |
182012 |
- |
RS26 |
Unspecified |
scaffold11235 |
182050 |
182096 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
182173 |
182212 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
182690 |
182716 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
182874 |
182911 |
+ |
(TTAA)n |
Simple_repeat |
scaffold11235 |
182962 |
182997 |
+ |
(TGATT)n |
Simple_repeat |
scaffold11235 |
183223 |
183269 |
+ |
(TTGAA)n |
Simple_repeat |
scaffold11235 |
186629 |
186831 |
+ |
RS146 |
Unspecified |
scaffold11235 |
186822 |
187401 |
- |
PL503 |
Unspecified |
scaffold11235 |
187534 |
187800 |
+ |
RS17600 |
Unspecified |
scaffold11235 |
188365 |
188610 |
+ |
RS16888 |
Unspecified |
scaffold11235 |
188639 |
188664 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
189443 |
189475 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
189820 |
189933 |
+ |
PL315 |
Unspecified |
scaffold11235 |
190393 |
190456 |
+ |
(ATTTTAA)n |
Simple_repeat |
scaffold11235 |
191236 |
191264 |
+ |
(GAATA)n |
Simple_repeat |
scaffold11235 |
191359 |
191640 |
- |
RS4258 |
Unspecified |
scaffold11235 |
191673 |
191736 |
- |
RS8625 |
Unspecified |
scaffold11235 |
191965 |
192021 |
+ |
GA-rich |
Low_complexity |
scaffold11235 |
192271 |
192291 |
+ |
(CT)n |
Simple_repeat |
scaffold11235 |
192317 |
192343 |
+ |
(ATTG)n |
Simple_repeat |
scaffold11235 |
193805 |
193957 |
+ |
PL517 |
Unspecified |
scaffold11235 |
194423 |
194461 |
+ |
(ATTGTTT)n |
Simple_repeat |
scaffold11235 |
197362 |
197404 |
+ |
(ATT)n |
Simple_repeat |
scaffold11235 |
197602 |
197769 |
- |
PL271 |
Unspecified |
scaffold11235 |
199274 |
199325 |
+ |
(AATAGTT)n |
Simple_repeat |
scaffold11235 |
200188 |
200231 |
+ |
(TAA)n |
Simple_repeat |
scaffold11235 |
200307 |
200383 |
+ |
(TTCTTTT)n |
Simple_repeat |
scaffold11235 |
200674 |
200725 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
200737 |
200767 |
+ |
(AAATT)n |
Simple_repeat |
scaffold11235 |
201027 |
201043 |
+ |
(AG)n |
Simple_repeat |
scaffold11235 |
201043 |
201074 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
207968 |
207990 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
212491 |
212556 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
213152 |
213245 |
- |
RS4475 |
Unspecified |
scaffold11235 |
213301 |
213335 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
214439 |
214487 |
+ |
(AATCATC)n |
Simple_repeat |
scaffold11235 |
214991 |
215039 |
+ |
(AATCATC)n |
Simple_repeat |
scaffold11235 |
215710 |
215728 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
216367 |
216387 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
216835 |
216872 |
+ |
(TATTTT)n |
Simple_repeat |
scaffold11235 |
217185 |
217670 |
+ |
PL271 |
Unspecified |
scaffold11235 |
218278 |
218310 |
+ |
(CGG)n |
Simple_repeat |
scaffold11235 |
221123 |
221264 |
+ |
(TCGGG)n |
Simple_repeat |
scaffold11235 |
221315 |
221383 |
+ |
(ATTTA)n |
Simple_repeat |
scaffold11235 |
221422 |
221646 |
+ |
(TCGGG)n |
Simple_repeat |
scaffold11235 |
223324 |
223364 |
+ |
(TTATTTT)n |
Simple_repeat |
scaffold11235 |
223432 |
223463 |
+ |
(TGTTGC)n |
Simple_repeat |
scaffold11235 |
224114 |
224143 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
224263 |
224290 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
227317 |
227926 |
+ |
RS132 |
Unspecified |
scaffold11235 |
229304 |
229331 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
232778 |
232817 |
+ |
(TA)n |
Simple_repeat |
scaffold11235 |
232817 |
232913 |
+ |
(AAGATG)n |
Simple_repeat |
scaffold11235 |
233147 |
233379 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold11235 |
234967 |
235065 |
- |
RS16911 |
Unspecified |
scaffold11235 |
235335 |
235375 |
+ |
(TAT)n |
Simple_repeat |
scaffold11235 |
235857 |
235906 |
+ |
(TTTTTAT)n |
Simple_repeat |
scaffold11235 |
237632 |
237668 |
+ |
(AAT)n |
Simple_repeat |
scaffold11235 |
241120 |
241205 |
+ |
(AATC)n |
Simple_repeat |
scaffold11235 |
241220 |
241280 |
+ |
GA-rich |
Low_complexity |
scaffold11235 |
241808 |
242070 |
+ |
RS240 |
Unspecified |
scaffold11235 |
242770 |
242933 |
- |
RS2719 |
Unspecified |
scaffold11235 |
242776 |
242952 |
+ |
RS233 |
Unspecified |
scaffold11235 |
243601 |
243624 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
244021 |
244083 |
+ |
RS576 |
Unspecified |
scaffold11235 |
244172 |
244413 |
+ |
RS728 |
Unspecified |
scaffold11235 |
244582 |
244615 |
+ |
(TTATTT)n |
Simple_repeat |
scaffold11235 |
245077 |
245100 |
+ |
(AT)n |
Simple_repeat |
scaffold11235 |
245225 |
245263 |
+ |
(ATA)n |
Simple_repeat |
scaffold11235 |
247769 |
247789 |
+ |
(GGGT)n |
Simple_repeat |
scaffold11235 |
248030 |
248216 |
+ |
RS728 |
Unspecified |
scaffold11235 |
249157 |
249186 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
249592 |
249651 |
+ |
GA-rich |
Low_complexity |
scaffold11235 |
249759 |
249792 |
+ |
(AT)n |
Simple_repeat |
scaffold11235 |
249838 |
249886 |
+ |
(TTTTA)n |
Simple_repeat |
scaffold11235 |
250378 |
250433 |
+ |
(TATTAAC)n |
Simple_repeat |
scaffold11235 |
250754 |
250776 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
251666 |
251684 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
252185 |
252245 |
+ |
(CTCTCT)n |
Simple_repeat |
scaffold11235 |
252281 |
252325 |
+ |
(ATTATA)n |
Simple_repeat |
scaffold11235 |
253024 |
253054 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
253349 |
253386 |
+ |
(TTTCATT)n |
Simple_repeat |
scaffold11235 |
254012 |
254032 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
254751 |
254784 |
+ |
(AAC)n |
Simple_repeat |
scaffold11235 |
255076 |
255099 |
+ |
(ATC)n |
Simple_repeat |
scaffold11235 |
255164 |
255203 |
+ |
(TAA)n |
Simple_repeat |
scaffold11235 |
255275 |
255320 |
+ |
(TAA)n |
Simple_repeat |
scaffold11235 |
255449 |
255530 |
+ |
(TTAA)n |
Simple_repeat |
scaffold11235 |
255611 |
255635 |
+ |
(TTAT)n |
Simple_repeat |
scaffold11235 |
255681 |
255729 |
+ |
(ATAAT)n |
Simple_repeat |
scaffold11235 |
255909 |
255935 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
256329 |
256434 |
+ |
RS750 |
Unspecified |
scaffold11235 |
256760 |
256941 |
- |
RS5 |
Unspecified |
scaffold11235 |
257461 |
257486 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
257619 |
257882 |
+ |
RS736 |
Unspecified |
scaffold11235 |
257928 |
257966 |
+ |
(AATAAC)n |
Simple_repeat |
scaffold11235 |
258468 |
258506 |
+ |
(TCTTCCT)n |
Simple_repeat |
scaffold11235 |
258521 |
258539 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
259804 |
259956 |
- |
RS14624 |
Unspecified |
scaffold11235 |
260270 |
260320 |
+ |
RS18371 |
Unspecified |
scaffold11235 |
260281 |
260340 |
- |
RS1854 |
Unspecified |
scaffold11235 |
262615 |
262676 |
+ |
(TAATTA)n |
Simple_repeat |
scaffold11235 |
262970 |
263003 |
- |
RS958 |
Unspecified |
scaffold11235 |
262981 |
263036 |
- |
RS958 |
Unspecified |
scaffold11235 |
263106 |
263129 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
263289 |
263350 |
+ |
(ATTATA)n |
Simple_repeat |
scaffold11235 |
263694 |
263733 |
+ |
(TTTTAA)n |
Simple_repeat |
scaffold11235 |
263833 |
263865 |
+ |
(TTTA)n |
Simple_repeat |
scaffold11235 |
264651 |
264745 |
+ |
RS1779 |
Unspecified |
scaffold11235 |
265147 |
265213 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
265556 |
265588 |
+ |
(TTAT)n |
Simple_repeat |
scaffold11235 |
267068 |
267094 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
267265 |
267292 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
268026 |
268121 |
- |
RS4475 |
Unspecified |
scaffold11235 |
269271 |
269331 |
+ |
(CCGCC)n |
Simple_repeat |
scaffold11235 |
269406 |
269453 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
269543 |
269649 |
- |
RS14710 |
Unspecified |
scaffold11235 |
269641 |
269920 |
+ |
RS1221 |
Unspecified |
scaffold11235 |
269886 |
270191 |
- |
RS1452 |
Unspecified |
scaffold11235 |
271265 |
271331 |
+ |
(ATA)n |
Simple_repeat |
scaffold11235 |
271483 |
271542 |
+ |
(ATT)n |
Simple_repeat |
scaffold11235 |
271660 |
271921 |
- |
RS726 |
Unspecified |
scaffold11235 |
272295 |
272536 |
+ |
RS581 |
Unspecified |
scaffold11235 |
273201 |
273227 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
273255 |
273515 |
+ |
RS26 |
Unspecified |
scaffold11235 |
273569 |
273652 |
+ |
RS17638 |
Unspecified |
scaffold11235 |
273599 |
273653 |
- |
RS16604 |
Unspecified |
scaffold11235 |
274273 |
274618 |
- |
PL470 |
Unspecified |
scaffold11235 |
274625 |
274943 |
+ |
(TA)n |
Simple_repeat |
scaffold11235 |
274862 |
274943 |
+ |
(TA)n |
Simple_repeat |
scaffold11235 |
275134 |
275372 |
- |
RS4 |
Unspecified |
scaffold11235 |
276995 |
277029 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
277090 |
277128 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
277197 |
277221 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
277864 |
277906 |
+ |
(ATG)n |
Simple_repeat |
scaffold11235 |
278482 |
278516 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
278575 |
278828 |
+ |
RS240 |
Unspecified |
scaffold11235 |
279366 |
279383 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
280229 |
280262 |
+ |
(AATA)n |
Simple_repeat |
scaffold11235 |
280732 |
280823 |
+ |
(AATTATA)n |
Simple_repeat |
scaffold11235 |
281267 |
281314 |
+ |
(TATTAA)n |
Simple_repeat |
scaffold11235 |
281666 |
281686 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
282201 |
282243 |
+ |
(CGA)n |
Simple_repeat |
scaffold11235 |
282527 |
282591 |
+ |
(AATT)n |
Simple_repeat |
scaffold11235 |
283179 |
283209 |
+ |
(GAATG)n |
Simple_repeat |
scaffold11235 |
283768 |
283874 |
+ |
(AGCTG)n |
Simple_repeat |
scaffold11235 |
283916 |
283951 |
+ |
(AAT)n |
Simple_repeat |
scaffold11235 |
283955 |
284094 |
+ |
(AATAAT)n |
Simple_repeat |
scaffold11235 |
284253 |
284319 |
- |
RS4835 |
Unspecified |
scaffold11235 |
284314 |
284376 |
+ |
(TAT)n |
Simple_repeat |
scaffold11235 |
284379 |
284412 |
+ |
(AATAAT)n |
Simple_repeat |
scaffold11235 |
284705 |
284722 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
285429 |
285762 |
+ |
RS660 |
Unspecified |
scaffold11235 |
285974 |
286028 |
+ |
(TATTA)n |
Simple_repeat |
scaffold11235 |
286554 |
286722 |
+ |
RS133 |
Unspecified |
scaffold11235 |
286939 |
287039 |
+ |
RS16382 |
Unspecified |
scaffold11235 |
287096 |
287167 |
- |
RS8349 |
Unspecified |
scaffold11235 |
288101 |
288118 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
288119 |
288147 |
+ |
(TTTTG)n |
Simple_repeat |
scaffold11235 |
288148 |
288153 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
288156 |
288191 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
288305 |
288529 |
- |
RS16888 |
Unspecified |
scaffold11235 |
288695 |
288739 |
- |
CACTA_LP |
DNA/CMC-EnSpm |
scaffold11235 |
289271 |
289319 |
+ |
(TCGTGG)n |
Simple_repeat |
scaffold11235 |
289442 |
289716 |
- |
RS102 |
Unspecified |
scaffold11235 |
290333 |
290369 |
+ |
(ATT)n |
Simple_repeat |
scaffold11235 |
292366 |
292388 |
+ |
(AAAT)n |
Simple_repeat |
scaffold11235 |
293448 |
293485 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
300206 |
300263 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
300514 |
300549 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
300686 |
300723 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
301097 |
301192 |
- |
RS4475 |
Unspecified |
scaffold11235 |
301718 |
301813 |
- |
RS15470 |
Unspecified |
scaffold11235 |
301729 |
301837 |
- |
RS84 |
Unspecified |
scaffold11235 |
301837 |
302226 |
+ |
RS1010 |
Unspecified |
scaffold11235 |
302163 |
302267 |
+ |
PL400 |
Unspecified |
scaffold11235 |
302266 |
302345 |
+ |
RS16888 |
Unspecified |
scaffold11235 |
303019 |
303037 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
306390 |
306459 |
+ |
(CAA)n |
Simple_repeat |
scaffold11235 |
307041 |
307093 |
+ |
(TCT)n |
Simple_repeat |
scaffold11235 |
307134 |
307159 |
+ |
(CGGGC)n |
Simple_repeat |
scaffold11235 |
308056 |
308202 |
- |
RS5090 |
Unspecified |
scaffold11235 |
308458 |
308494 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
308624 |
308952 |
+ |
RS5090 |
Unspecified |
scaffold11235 |
311018 |
311045 |
+ |
(TTTGC)n |
Simple_repeat |
scaffold11235 |
311646 |
311840 |
- |
LTR-1_SBi-LTR |
LTR |
scaffold11235 |
312684 |
312960 |
- |
RS326 |
Unspecified |
scaffold11235 |
313731 |
313774 |
+ |
(TT)n |
Simple_repeat |
scaffold11235 |
313812 |
313843 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
315411 |
315541 |
+ |
LTR-2_MX-LTR |
LTR |
scaffold11235 |
316170 |
316198 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
317249 |
317297 |
+ |
(GACCGC)n |
Simple_repeat |
scaffold11235 |
319933 |
319969 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
320582 |
320599 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
322785 |
322804 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
324933 |
324980 |
+ |
RS18111 |
Unspecified |
scaffold11235 |
325521 |
325551 |
+ |
(ATAC)n |
Simple_repeat |
scaffold11235 |
326245 |
326341 |
- |
RS4475 |
Unspecified |
scaffold11235 |
327053 |
327080 |
+ |
(TTTGGA)n |
Simple_repeat |
scaffold11235 |
327194 |
327746 |
- |
PL69 |
Unspecified |
scaffold11235 |
327748 |
328126 |
+ |
RS322 |
Unspecified |
scaffold11235 |
328130 |
328209 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
scaffold11235 |
328386 |
328417 |
+ |
(GGCCC)n |
Simple_repeat |
scaffold11235 |
328782 |
328809 |
+ |
(AT)n |
Simple_repeat |
scaffold11235 |
329538 |
329560 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
330058 |
330090 |
+ |
(TTA)n |
Simple_repeat |
scaffold11235 |
330739 |
330830 |
- |
LTR-7_Mad-LTR |
LTR |
scaffold11235 |
331004 |
331039 |
+ |
(TTTTTA)n |
Simple_repeat |
scaffold11235 |
331118 |
331146 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
332314 |
332572 |
+ |
RS82 |
Unspecified |
scaffold11235 |
334353 |
334437 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold11235 |
334449 |
334487 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
335096 |
335163 |
- |
RS11939 |
Unspecified |
scaffold11235 |
335262 |
335331 |
- |
RS11939 |
Unspecified |
scaffold11235 |
336360 |
336396 |
+ |
(AATA)n |
Simple_repeat |
scaffold11235 |
336443 |
336471 |
+ |
(TGTCT)n |
Simple_repeat |
scaffold11235 |
336747 |
337245 |
- |
RS14306 |
Unspecified |
scaffold11235 |
337232 |
338242 |
+ |
PL795 |
Unspecified |
scaffold11235 |
338228 |
338325 |
- |
RS14306 |
Unspecified |
scaffold11235 |
340909 |
341309 |
- |
RS5426 |
Unspecified |
scaffold11235 |
342603 |
342750 |
+ |
RS5544 |
Unspecified |
scaffold11235 |
343424 |
343455 |
+ |
(TAGGAT)n |
Simple_repeat |
scaffold11235 |
345041 |
345069 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
345086 |
345278 |
+ |
RS13085 |
Unspecified |
scaffold11235 |
345392 |
345452 |
+ |
PIGY-I_PS |
LTR/Gypsy |
scaffold11235 |
345680 |
345717 |
+ |
(CTT)n |
Simple_repeat |
scaffold11235 |
345813 |
345834 |
+ |
(CATT)n |
Simple_repeat |
scaffold11235 |
351195 |
351228 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
354618 |
354644 |
+ |
(ATTTT)n |
Simple_repeat |
scaffold11235 |
354862 |
354903 |
+ |
(TTATAT)n |
Simple_repeat |
scaffold11235 |
355177 |
355228 |
+ |
(TATTAAC)n |
Simple_repeat |
scaffold11235 |
357652 |
357688 |
+ |
GA-rich |
Low_complexity |
scaffold11235 |
360004 |
360021 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
360313 |
360338 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
361936 |
361954 |
+ |
(A)n |
Simple_repeat |
scaffold11235 |
362428 |
363172 |
- |
PL21 |
Unspecified |
scaffold11235 |
363593 |
363636 |
+ |
(ATAAT)n |
Simple_repeat |
scaffold11235 |
365327 |
365375 |
+ |
(TTT)n |
Simple_repeat |
scaffold11235 |
366718 |
366977 |
- |
RS8 |
Unspecified |
scaffold11235 |
368000 |
368108 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold11235 |
368306 |
368764 |
+ |
RS283 |
Unspecified |
scaffold11235 |
369134 |
369163 |
+ |
(ATT)n |
Simple_repeat |
scaffold11235 |
369558 |
369588 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
370053 |
370201 |
+ |
RS17 |
Unspecified |
scaffold11235 |
370511 |
370780 |
- |
RS1 |
Unspecified |
scaffold11235 |
371140 |
371338 |
+ |
RS152 |
Unspecified |
scaffold11235 |
371344 |
371512 |
- |
RS503 |
Unspecified |
scaffold11235 |
372033 |
372154 |
- |
RS13542 |
Unspecified |
scaffold11235 |
372305 |
372533 |
+ |
RS15131 |
Unspecified |
scaffold11235 |
372970 |
372990 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
373060 |
373200 |
+ |
RS511 |
Unspecified |
scaffold11235 |
373267 |
373454 |
+ |
SHAMET |
DNA/TcMar-Stowaway |
scaffold11235 |
373452 |
373581 |
+ |
RS14624 |
Unspecified |
scaffold11235 |
380431 |
380487 |
+ |
(CAATT)n |
Simple_repeat |
scaffold11235 |
381083 |
381156 |
+ |
(TTTGAA)n |
Simple_repeat |
scaffold11235 |
382186 |
383214 |
- |
RS9623 |
Unspecified |
scaffold11235 |
384351 |
384476 |
- |
RS8507 |
Unspecified |
scaffold11235 |
384788 |
384911 |
- |
RS13995 |
Unspecified |
scaffold11235 |
385037 |
385080 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
385253 |
385287 |
+ |
(CAATCAT)n |
Simple_repeat |
scaffold11235 |
385704 |
385729 |
+ |
(TCT)n |
Simple_repeat |
scaffold11235 |
386839 |
386946 |
- |
RS13045 |
Unspecified |
scaffold11235 |
386968 |
387175 |
- |
RS13187 |
Unspecified |
scaffold11235 |
387325 |
387470 |
- |
RS10472 |
Unspecified |
scaffold11235 |
388111 |
388225 |
- |
RS12463 |
Unspecified |
scaffold11235 |
388290 |
388434 |
- |
RS12550 |
Unspecified |
scaffold11235 |
388601 |
388650 |
+ |
(T)n |
Simple_repeat |
scaffold11235 |
388878 |
388910 |
+ |
(AATTC)n |
Simple_repeat |
scaffold11235 |
390063 |
390179 |
+ |
Gypsy-177_ZM-I |
LTR/Gypsy |
scaffold11235 |
391305 |
391345 |
+ |
A-rich |
Low_complexity |
scaffold11235 |
391410 |
391483 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |