scaffold1186 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold1186 |
380 |
409 |
+ |
(AAAAG)n |
Simple_repeat |
| scaffold1186 |
664 |
700 |
+ |
WHAM2_TM-int |
LTR/Gypsy |
| scaffold1186 |
1063 |
1097 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold1186 |
1992 |
2093 |
+ |
PL600 |
Unspecified |
| scaffold1186 |
2006 |
2109 |
+ |
RS254 |
Unspecified |
| scaffold1186 |
2648 |
2687 |
+ |
(TTTTCG)n |
Simple_repeat |
| scaffold1186 |
3235 |
3297 |
+ |
(ACAGTCCGTT)n |
Simple_repeat |
| scaffold1186 |
3807 |
4520 |
+ |
Mariner_MT |
DNA/TcMar-Stowaway |
| scaffold1186 |
5580 |
5635 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
6047 |
6108 |
+ |
GA-rich |
Low_complexity |
| scaffold1186 |
6210 |
6249 |
+ |
G-rich |
Low_complexity |
| scaffold1186 |
7058 |
7128 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
7153 |
7640 |
+ |
RS1686 |
Unspecified |
| scaffold1186 |
8297 |
9176 |
+ |
PL449 |
Unspecified |
| scaffold1186 |
9480 |
9969 |
- |
PL90 |
Unspecified |
| scaffold1186 |
9484 |
9853 |
- |
RS3226 |
Unspecified |
| scaffold1186 |
11025 |
11054 |
+ |
(CTGCCC)n |
Simple_repeat |
| scaffold1186 |
12071 |
12107 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold1186 |
12443 |
12479 |
- |
WHAM2_TM-int |
LTR/Gypsy |
| scaffold1186 |
13199 |
13242 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
13378 |
13414 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
14400 |
14437 |
+ |
(T)n |
Simple_repeat |
| scaffold1186 |
17076 |
17111 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
17217 |
17771 |
+ |
RS5034 |
Unspecified |
| scaffold1186 |
18164 |
18487 |
- |
WHAM2_TM-int |
LTR/Gypsy |
| scaffold1186 |
21237 |
21273 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold1186 |
21933 |
21981 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold1186 |
22255 |
22312 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
23145 |
23204 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold1186 |
23677 |
23739 |
+ |
(TAATAA)n |
Simple_repeat |
| scaffold1186 |
23718 |
23786 |
+ |
(TAATGT)n |
Simple_repeat |
| scaffold1186 |
23765 |
23816 |
+ |
(AGTTATTT)n |
Simple_repeat |
| scaffold1186 |
23867 |
23901 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold1186 |
24929 |
25615 |
+ |
PL23 |
Unspecified |
| scaffold1186 |
25706 |
25756 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold1186 |
26410 |
28067 |
+ |
RS265 |
Unspecified |
| scaffold1186 |
28275 |
28351 |
+ |
(TGT)n |
Simple_repeat |
| scaffold1186 |
29100 |
29179 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
29357 |
29386 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold1186 |
30038 |
30079 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
30204 |
30264 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
30602 |
30641 |
+ |
(TCATAAC)n |
Simple_repeat |
| scaffold1186 |
30972 |
30988 |
+ |
(A)n |
Simple_repeat |
| scaffold1186 |
31699 |
31780 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
32255 |
32304 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
32574 |
32942 |
+ |
RS221 |
Unspecified |
| scaffold1186 |
33174 |
33208 |
+ |
(T)n |
Simple_repeat |
| scaffold1186 |
35280 |
35313 |
+ |
(GAAT)n |
Simple_repeat |
| scaffold1186 |
35406 |
36950 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold1186 |
37330 |
38610 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold1186 |
40554 |
40599 |
+ |
(TTTAAT)n |
Simple_repeat |
| scaffold1186 |
44167 |
44193 |
+ |
(GAAAG)n |
Simple_repeat |
| scaffold1186 |
46389 |
46482 |
- |
XILON1_ZM-int |
LTR/Gypsy |
| scaffold1186 |
48778 |
48784 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold1186 |
48785 |
48814 |
+ |
(TTA)n |
Simple_repeat |
| scaffold1186 |
49130 |
49193 |
+ |
(ATTTAT)n |
Simple_repeat |
| scaffold1186 |
50002 |
50077 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold1186 |
50479 |
50735 |
+ |
PL337 |
Unspecified |
| scaffold1186 |
52676 |
52710 |
- |
LINE1E_MT |
LINE/L1 |
| scaffold1186 |
53329 |
53898 |
- |
L1-10_Mad |
LINE/L1 |
| scaffold1186 |
55228 |
55280 |
+ |
(TTGTTT)n |
Simple_repeat |
| scaffold1186 |
55369 |
56084 |
+ |
RS4906 |
Unspecified |
| scaffold1186 |
56234 |
56361 |
+ |
RS3315 |
Unspecified |
| scaffold1186 |
56900 |
56946 |
+ |
(TTTAATT)n |
Simple_repeat |
| scaffold1186 |
57496 |
57667 |
- |
RS14470 |
Unspecified |
| scaffold1186 |
57648 |
57729 |
+ |
RS7380 |
Unspecified |
| scaffold1186 |
57662 |
57938 |
+ |
RS714 |
Unspecified |
| scaffold1186 |
58307 |
58369 |
+ |
(GACTT)n |
Simple_repeat |
| scaffold1186 |
58593 |
58634 |
+ |
(GGTGCC)n |
Simple_repeat |
| scaffold1186 |
58757 |
58838 |
- |
RS7380 |
Unspecified |
| scaffold1186 |
58862 |
59343 |
- |
RS10439 |
Unspecified |
| scaffold1186 |
59344 |
59471 |
- |
RS105 |
Unspecified |
| scaffold1186 |
59394 |
61140 |
+ |
RS869 |
Unspecified |
| scaffold1186 |
61140 |
61177 |
+ |
(TATATC)n |
Simple_repeat |
| scaffold1186 |
61461 |
61512 |
+ |
(ATTTG)n |
Simple_repeat |
| scaffold1186 |
63772 |
63883 |
+ |
(TTG)n |
Simple_repeat |
| scaffold1186 |
64423 |
64474 |
+ |
(TATTGTA)n |
Simple_repeat |
| scaffold1186 |
65363 |
65454 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold1186 |
66757 |
66788 |
+ |
(TATAATG)n |
Simple_repeat |
| scaffold1186 |
71187 |
71265 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
72670 |
72743 |
+ |
(A)n |
Simple_repeat |
| scaffold1186 |
74003 |
74044 |
+ |
(A)n |
Simple_repeat |
| scaffold1186 |
74177 |
74204 |
+ |
(AGC)n |
Simple_repeat |
| scaffold1186 |
74464 |
74497 |
+ |
(GAGGCT)n |
Simple_repeat |
| scaffold1186 |
74771 |
74810 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold1186 |
74882 |
74904 |
+ |
(T)n |
Simple_repeat |
| scaffold1186 |
75365 |
75542 |
- |
RS4081 |
Unspecified |
| scaffold1186 |
77414 |
77451 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold1186 |
77982 |
78353 |
+ |
PL565 |
Unspecified |
| scaffold1186 |
78510 |
78547 |
+ |
(T)n |
Simple_repeat |
| scaffold1186 |
79050 |
79452 |
+ |
RS733 |
Unspecified |
| scaffold1186 |
79529 |
79606 |
- |
EnSpm1_SB |
DNA/CMC-EnSpm |
| scaffold1186 |
79536 |
79615 |
- |
Sat-1_CPa |
Satellite |
| scaffold1186 |
79618 |
79664 |
+ |
(T)n |
Simple_repeat |
| scaffold1186 |
80177 |
80580 |
+ |
RS733 |
Unspecified |
| scaffold1186 |
80665 |
80794 |
+ |
(ATA)n |
Simple_repeat |
| scaffold1186 |
81569 |
81778 |
+ |
(AATA)n |
Simple_repeat |
| scaffold1186 |
81579 |
81778 |
+ |
(AATA)n |
Simple_repeat |
| scaffold1186 |
81716 |
81778 |
+ |
(AATA)n |
Simple_repeat |
| scaffold1186 |
82027 |
82067 |
+ |
(CTAAGA)n |
Simple_repeat |
| scaffold1186 |
82631 |
82667 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
82761 |
82790 |
+ |
(AAT)n |
Simple_repeat |
| scaffold1186 |
83064 |
83469 |
+ |
RS14755 |
Unspecified |
| scaffold1186 |
83640 |
83765 |
+ |
RS11333 |
Unspecified |
| scaffold1186 |
84681 |
84927 |
+ |
Helitron-1_EPa |
RC/Helitron |
| scaffold1186 |
85880 |
86027 |
+ |
RS3922 |
Unspecified |
| scaffold1186 |
86649 |
86794 |
+ |
RS10004 |
Unspecified |
| scaffold1186 |
87347 |
87566 |
- |
RS5532 |
Unspecified |
| scaffold1186 |
87564 |
87703 |
- |
RS10851 |
Unspecified |
| scaffold1186 |
87846 |
87887 |
+ |
GA-rich |
Low_complexity |
| scaffold1186 |
88779 |
89039 |
+ |
RS10559 |
Unspecified |
| scaffold1186 |
93732 |
93762 |
+ |
(TGTTT)n |
Simple_repeat |
| scaffold1186 |
94539 |
94591 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold1186 |
95058 |
95209 |
- |
DNA9-1_Mad |
DNA/MULE-MuDR |
| scaffold1186 |
97729 |
98092 |
+ |
PL947 |
Unspecified |
| scaffold1186 |
98232 |
98348 |
- |
RS3896 |
Unspecified |
| scaffold1186 |
98349 |
98375 |
+ |
(T)n |
Simple_repeat |
| scaffold1186 |
98349 |
98411 |
+ |
(T)n |
Simple_repeat |
| scaffold1186 |
98366 |
98411 |
- |
RS3896 |
Unspecified |
| scaffold1186 |
98428 |
98867 |
- |
RS3373 |
Unspecified |
| scaffold1186 |
98770 |
99050 |
+ |
RS11142 |
Unspecified |
| scaffold1186 |
99175 |
99213 |
+ |
(TCACAA)n |
Simple_repeat |
| scaffold1186 |
99738 |
99757 |
+ |
(A)n |
Simple_repeat |
| scaffold1186 |
106250 |
106287 |
+ |
(TACA)n |
Simple_repeat |
| scaffold1186 |
106489 |
106662 |
- |
RS233 |
Unspecified |
| scaffold1186 |
106508 |
106668 |
+ |
RS2719 |
Unspecified |
| scaffold1186 |
106684 |
106715 |
+ |
(T)n |
Simple_repeat |
| scaffold1186 |
107817 |
108340 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold1186 |
107817 |
108272 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold1186 |
107853 |
108217 |
- |
L1-13_CPa |
LINE/L1 |
| scaffold1186 |
108217 |
108340 |
+ |
PL247 |
Unspecified |
| scaffold1186 |
113749 |
114089 |
- |
L1-5_STu |
LINE/L1 |
| scaffold1186 |
114483 |
114593 |
- |
HAT-N8_Mad |
DNA/hAT-Tag1 |
| scaffold1186 |
114886 |
114916 |
+ |
(T)n |
Simple_repeat |
| scaffold1186 |
114977 |
115055 |
- |
hAT-9N_SBi |
DNA/hAT-Tag1 |
| scaffold1186 |
115016 |
115036 |
+ |
Gypsy-108_SB-I |
LTR/Gypsy |
| scaffold1186 |
115037 |
115072 |
+ |
hAT-9_SBi |
DNA/hAT-Tag1 |
| scaffold1186 |
115073 |
115092 |
+ |
Gypsy-108_SB-I |
LTR/Gypsy |
| scaffold1186 |
117774 |
117889 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
118724 |
118788 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
118896 |
118940 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
119824 |
119887 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold1186 |
119987 |
120030 |
+ |
GA-rich |
Low_complexity |
| scaffold1186 |
120367 |
120398 |
+ |
(TTTATC)n |
Simple_repeat |
| scaffold1186 |
120704 |
120722 |
+ |
(T)n |
Simple_repeat |
| scaffold1186 |
120920 |
121288 |
+ |
RS248 |
Unspecified |
| scaffold1186 |
121356 |
121417 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
121700 |
121908 |
+ |
PL407 |
Unspecified |
| scaffold1186 |
122399 |
122426 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold1186 |
126346 |
126396 |
+ |
A-rich |
Low_complexity |
| scaffold1186 |
126916 |
127469 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold1186 |
127586 |
128147 |
+ |
RS1930 |
Unspecified |
| scaffold1186 |
127688 |
128342 |
+ |
RS661 |
Unspecified |
| scaffold1186 |
127814 |
128437 |
+ |
RS1207 |
Unspecified |
| scaffold1186 |
128596 |
128847 |
- |
GYPSHAN_I_MT-int |
LTR/Gypsy |
| scaffold1186 |
129727 |
129783 |
+ |
(GGTTTT)n |
Simple_repeat |
| scaffold1186 |
130361 |
130448 |
+ |
Gypsy-193_ZM-I |
LTR/Gypsy |