scaffold12812 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold12812 |
1376 |
1513 |
+ |
(CTG)n |
Simple_repeat |
scaffold12812 |
1544 |
1573 |
+ |
(TTG)n |
Simple_repeat |
scaffold12812 |
1704 |
1745 |
+ |
(TTGAA)n |
Simple_repeat |
scaffold12812 |
1954 |
2127 |
+ |
RS13085 |
Unspecified |
scaffold12812 |
2548 |
2810 |
- |
RS365 |
Unspecified |
scaffold12812 |
3693 |
3784 |
+ |
(CAC)n |
Simple_repeat |
scaffold12812 |
3802 |
3856 |
+ |
(AACCCG)n |
Simple_repeat |
scaffold12812 |
3946 |
4041 |
+ |
cacta |
cacta(TransposonPSI) |
scaffold12812 |
3949 |
4036 |
+ |
(GGT)n |
Simple_repeat |
scaffold12812 |
4437 |
4478 |
+ |
RS18371 |
Unspecified |
scaffold12812 |
4474 |
4744 |
- |
RS1 |
Unspecified |
scaffold12812 |
4756 |
4947 |
- |
RS16888 |
Unspecified |
scaffold12812 |
5785 |
5883 |
+ |
(AATTG)n |
Simple_repeat |
scaffold12812 |
5969 |
6046 |
- |
LTR-7_Mad-LTR |
LTR |
scaffold12812 |
6362 |
6617 |
- |
RS1 |
Unspecified |
scaffold12812 |
6587 |
6624 |
+ |
RS1 |
Unspecified |
scaffold12812 |
6665 |
6716 |
+ |
A-rich |
Low_complexity |
scaffold12812 |
6694 |
6732 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
7161 |
7196 |
- |
RS1 |
Unspecified |
scaffold12812 |
7166 |
7437 |
+ |
RS1 |
Unspecified |
scaffold12812 |
7870 |
8185 |
+ |
PL782 |
Unspecified |
scaffold12812 |
8183 |
8427 |
- |
RS581 |
Unspecified |
scaffold12812 |
8426 |
8668 |
- |
RS72 |
Unspecified |
scaffold12812 |
8828 |
8849 |
+ |
(T)n |
Simple_repeat |
scaffold12812 |
9871 |
9910 |
+ |
(TTGTTT)n |
Simple_repeat |
scaffold12812 |
10053 |
11134 |
+ |
RS3148 |
Unspecified |
scaffold12812 |
10624 |
10721 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold12812 |
11474 |
11519 |
+ |
(ATT)n |
Simple_repeat |
scaffold12812 |
11588 |
11712 |
+ |
RS18284 |
Unspecified |
scaffold12812 |
12319 |
12376 |
+ |
(TCCCC)n |
Simple_repeat |
scaffold12812 |
12634 |
12713 |
- |
RS15138 |
Unspecified |
scaffold12812 |
12715 |
12901 |
+ |
PL227 |
Unspecified |
scaffold12812 |
13547 |
13580 |
+ |
(TTG)n |
Simple_repeat |
scaffold12812 |
13936 |
14070 |
+ |
(GTT)n |
Simple_repeat |
scaffold12812 |
16539 |
16749 |
+ |
RS17119 |
Unspecified |
scaffold12812 |
16801 |
16852 |
+ |
(TT)n |
Simple_repeat |
scaffold12812 |
17081 |
17108 |
+ |
(TTTAA)n |
Simple_repeat |
scaffold12812 |
17302 |
17425 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold12812 |
17426 |
17496 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold12812 |
17560 |
17681 |
+ |
RS915 |
Unspecified |
scaffold12812 |
18484 |
18682 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold12812 |
18683 |
18745 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold12812 |
19754 |
19805 |
+ |
A-rich |
Low_complexity |
scaffold12812 |
21363 |
21422 |
+ |
(ATATTTT)n |
Simple_repeat |
scaffold12812 |
23087 |
23115 |
+ |
(T)n |
Simple_repeat |
scaffold12812 |
23162 |
23222 |
- |
RS17600 |
Unspecified |
scaffold12812 |
23238 |
23331 |
+ |
RS549 |
Unspecified |
scaffold12812 |
23322 |
23531 |
- |
RS17600 |
Unspecified |
scaffold12812 |
24244 |
24300 |
+ |
SHALINE5_MT |
LINE/L1 |
scaffold12812 |
25851 |
25890 |
+ |
(ACA)n |
Simple_repeat |
scaffold12812 |
25941 |
25966 |
+ |
(CCA)n |
Simple_repeat |
scaffold12812 |
25977 |
26042 |
+ |
L1-3_VC |
LINE/L1 |
scaffold12812 |
26312 |
26340 |
+ |
(T)n |
Simple_repeat |
scaffold12812 |
30426 |
30449 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
31272 |
31331 |
+ |
(GTTTTT)n |
Simple_repeat |
scaffold12812 |
31485 |
31498 |
+ |
(GTT)n |
Simple_repeat |
scaffold12812 |
31499 |
31524 |
+ |
(TGG)n |
Simple_repeat |
scaffold12812 |
31525 |
31605 |
+ |
(GGTTTTG)n |
Simple_repeat |
scaffold12812 |
31845 |
31912 |
+ |
(TTG)n |
Simple_repeat |
scaffold12812 |
32121 |
32140 |
+ |
(TGT)n |
Simple_repeat |
scaffold12812 |
33692 |
33818 |
- |
RS7457 |
Unspecified |
scaffold12812 |
35052 |
35087 |
+ |
(TGACAA)n |
Simple_repeat |
scaffold12812 |
36045 |
36062 |
+ |
(T)n |
Simple_repeat |
scaffold12812 |
37459 |
37516 |
+ |
(ATTTTCT)n |
Simple_repeat |
scaffold12812 |
37895 |
37936 |
+ |
(AT)n |
Simple_repeat |
scaffold12812 |
38543 |
38700 |
+ |
(TCGGG)n |
Simple_repeat |
scaffold12812 |
38874 |
39032 |
+ |
(TCGGG)n |
Simple_repeat |
scaffold12812 |
39080 |
39171 |
- |
RS1 |
Unspecified |
scaffold12812 |
39170 |
39264 |
- |
RS499 |
Unspecified |
scaffold12812 |
39955 |
40172 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold12812 |
41315 |
41436 |
+ |
A-rich |
Low_complexity |
scaffold12812 |
41570 |
41596 |
+ |
(AATTC)n |
Simple_repeat |
scaffold12812 |
42251 |
42312 |
+ |
(TTAA)n |
Simple_repeat |
scaffold12812 |
45141 |
45169 |
+ |
(T)n |
Simple_repeat |
scaffold12812 |
45170 |
45209 |
+ |
(TTTTG)n |
Simple_repeat |
scaffold12812 |
45549 |
45573 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
48637 |
48679 |
+ |
(CAC)n |
Simple_repeat |
scaffold12812 |
48784 |
48832 |
+ |
(TATTAT)n |
Simple_repeat |
scaffold12812 |
49123 |
49187 |
+ |
(AATAT)n |
Simple_repeat |
scaffold12812 |
49937 |
49977 |
+ |
(ATTAA)n |
Simple_repeat |
scaffold12812 |
50098 |
50518 |
- |
PL637 |
Unspecified |
scaffold12812 |
50680 |
50702 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
54433 |
54506 |
+ |
(TTAA)n |
Simple_repeat |
scaffold12812 |
55002 |
55048 |
+ |
GA-rich |
Low_complexity |
scaffold12812 |
55170 |
55208 |
+ |
(TGAAGAA)n |
Simple_repeat |
scaffold12812 |
55342 |
55436 |
+ |
RS13929 |
Unspecified |
scaffold12812 |
55478 |
55743 |
+ |
RS26 |
Unspecified |
scaffold12812 |
55824 |
56250 |
+ |
PL3 |
Unspecified |
scaffold12812 |
56990 |
57053 |
+ |
(TT)n |
Simple_repeat |
scaffold12812 |
59718 |
59735 |
+ |
(T)n |
Simple_repeat |
scaffold12812 |
60063 |
60245 |
+ |
RS2380 |
Unspecified |
scaffold12812 |
60891 |
60932 |
+ |
(T)n |
Simple_repeat |
scaffold12812 |
61088 |
61104 |
+ |
(TAT)n |
Simple_repeat |
scaffold12812 |
61134 |
61177 |
+ |
(TAA)n |
Simple_repeat |
scaffold12812 |
61628 |
61698 |
+ |
(ATTAT)n |
Simple_repeat |
scaffold12812 |
61876 |
61949 |
- |
RS13929 |
Unspecified |
scaffold12812 |
62355 |
62377 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
62451 |
62512 |
+ |
(GTATAC)n |
Simple_repeat |
scaffold12812 |
62610 |
62644 |
+ |
(GTG)n |
Simple_repeat |
scaffold12812 |
62955 |
62996 |
+ |
(TCATTA)n |
Simple_repeat |
scaffold12812 |
64011 |
64264 |
+ |
A-rich |
Low_complexity |
scaffold12812 |
64447 |
64512 |
+ |
RIRE8A_I-int |
LTR/Gypsy |
scaffold12812 |
65721 |
65751 |
+ |
(AACTG)n |
Simple_repeat |
scaffold12812 |
68249 |
68438 |
- |
RS11570 |
Unspecified |
scaffold12812 |
68649 |
68732 |
- |
RS22 |
Unspecified |
scaffold12812 |
68754 |
68774 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
70181 |
70219 |
+ |
(TATTTA)n |
Simple_repeat |
scaffold12812 |
70348 |
70537 |
+ |
RS9164 |
Unspecified |
scaffold12812 |
70535 |
70629 |
+ |
RS4475 |
Unspecified |
scaffold12812 |
70826 |
70977 |
- |
RS987 |
Unspecified |
scaffold12812 |
71468 |
71521 |
+ |
GA-rich |
Low_complexity |
scaffold12812 |
72191 |
72383 |
- |
RS5546 |
Unspecified |
scaffold12812 |
72449 |
72573 |
- |
RS12772 |
Unspecified |
scaffold12812 |
72699 |
72745 |
- |
RS12772 |
Unspecified |
scaffold12812 |
74480 |
74669 |
- |
RS11570 |
Unspecified |
scaffold12812 |
74692 |
74919 |
- |
RS549 |
Unspecified |
scaffold12812 |
74943 |
74963 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
76578 |
76637 |
+ |
(ATA)n |
Simple_repeat |
scaffold12812 |
76923 |
77151 |
+ |
(CAGTT)n |
Simple_repeat |
scaffold12812 |
77233 |
77266 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
77613 |
77652 |
+ |
(TCT)n |
Simple_repeat |
scaffold12812 |
78344 |
78371 |
+ |
(TGTT)n |
Simple_repeat |
scaffold12812 |
81714 |
81735 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
84453 |
84704 |
+ |
(AACTG)n |
Simple_repeat |
scaffold12812 |
84794 |
84826 |
+ |
(AAT)n |
Simple_repeat |
scaffold12812 |
85917 |
85962 |
+ |
(AATA)n |
Simple_repeat |
scaffold12812 |
87712 |
87788 |
- |
RS13501 |
Unspecified |
scaffold12812 |
87723 |
87896 |
- |
RS38 |
Unspecified |
scaffold12812 |
88210 |
88228 |
+ |
(TA)n |
Simple_repeat |
scaffold12812 |
88229 |
88269 |
+ |
(ATTAT)n |
Simple_repeat |
scaffold12812 |
88984 |
89218 |
- |
RS18 |
Unspecified |
scaffold12812 |
90792 |
90826 |
+ |
A-rich |
Low_complexity |
scaffold12812 |
91540 |
91562 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
92327 |
92384 |
- |
RS886 |
Unspecified |
scaffold12812 |
95056 |
95074 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
96480 |
96715 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
96599 |
96715 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
96599 |
96783 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
96691 |
96783 |
- |
RS10347 |
Unspecified |
scaffold12812 |
97037 |
97110 |
+ |
(ATTAA)n |
Simple_repeat |
scaffold12812 |
97240 |
97348 |
+ |
EnSpm-4_VV |
DNA/CMC-EnSpm |
scaffold12812 |
98391 |
98443 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
98746 |
98796 |
- |
RS3756 |
Unspecified |
scaffold12812 |
98858 |
98876 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
99052 |
99163 |
+ |
(AAGTTTTCTG)n |
Simple_repeat |
scaffold12812 |
99174 |
99211 |
+ |
(ATTTT)n |
Simple_repeat |
scaffold12812 |
99705 |
99885 |
+ |
PL298 |
Unspecified |
scaffold12812 |
99926 |
100014 |
- |
RS1323 |
Unspecified |
scaffold12812 |
100119 |
100152 |
+ |
(TATAA)n |
Simple_repeat |
scaffold12812 |
100290 |
100318 |
+ |
(TATAA)n |
Simple_repeat |
scaffold12812 |
100410 |
100441 |
+ |
(A)n |
Simple_repeat |
scaffold12812 |
100669 |
100691 |
+ |
(ATTA)n |
Simple_repeat |
scaffold12812 |
100875 |
100908 |
+ |
(TC)n |
Simple_repeat |
scaffold12812 |
101058 |
101076 |
+ |
(CAC)n |
Simple_repeat |
scaffold12812 |
104919 |
104993 |
+ |
(T)n |
Simple_repeat |
scaffold12812 |
107407 |
107438 |
+ |
(TACG)n |
Simple_repeat |
scaffold12812 |
107736 |
107765 |
+ |
(ATGGA)n |
Simple_repeat |
scaffold12812 |
108217 |
108265 |
+ |
A-rich |
Low_complexity |
scaffold12812 |
108509 |
108866 |
+ |
RS1534 |
Unspecified |
scaffold12812 |
109028 |
109071 |
+ |
(TTTATAG)n |
Simple_repeat |
scaffold12812 |
109028 |
109349 |
+ |
(TTTATAG)n |
Simple_repeat |
scaffold12812 |
109061 |
109349 |
+ |
RS631 |
Unspecified |
scaffold12812 |
110703 |
110738 |
+ |
Gypsy-72_GM-I |
LTR/Gypsy |