scaffold1350 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold1350 |
891 |
909 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
1068 |
1177 |
+ |
RS9614 |
Unspecified |
| scaffold1350 |
1224 |
1244 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
2520 |
2959 |
+ |
PL352 |
Unspecified |
| scaffold1350 |
3208 |
3243 |
+ |
(TGGCCCA)n |
Simple_repeat |
| scaffold1350 |
3298 |
3456 |
+ |
G-rich |
Low_complexity |
| scaffold1350 |
3593 |
3654 |
+ |
Copia-75_ST-I |
LTR/Copia |
| scaffold1350 |
3725 |
4373 |
+ |
Copia-93_VV-I |
LTR/Copia |
| scaffold1350 |
4733 |
4816 |
+ |
Copia-75_ST-I |
LTR/Copia |
| scaffold1350 |
4954 |
5033 |
+ |
G-rich |
Low_complexity |
| scaffold1350 |
5270 |
5338 |
+ |
A-rich |
Low_complexity |
| scaffold1350 |
5936 |
5963 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold1350 |
6328 |
6379 |
+ |
A-rich |
Low_complexity |
| scaffold1350 |
6397 |
6448 |
+ |
(CAC)n |
Simple_repeat |
| scaffold1350 |
6675 |
6747 |
- |
RS3491 |
Unspecified |
| scaffold1350 |
6748 |
6989 |
+ |
RS5644 |
Unspecified |
| scaffold1350 |
7076 |
7118 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
7546 |
7789 |
- |
RS5644 |
Unspecified |
| scaffold1350 |
7790 |
7862 |
+ |
RS3491 |
Unspecified |
| scaffold1350 |
7848 |
8168 |
- |
PL744 |
Unspecified |
| scaffold1350 |
8302 |
8477 |
- |
RS179 |
Unspecified |
| scaffold1350 |
9156 |
9178 |
+ |
(A)n |
Simple_repeat |
| scaffold1350 |
9191 |
9367 |
+ |
RS43 |
Unspecified |
| scaffold1350 |
9549 |
9585 |
+ |
(TTTATTT)n |
Simple_repeat |
| scaffold1350 |
9956 |
9985 |
+ |
(TTCAA)n |
Simple_repeat |
| scaffold1350 |
11530 |
11687 |
+ |
RS13533 |
Unspecified |
| scaffold1350 |
12626 |
12647 |
+ |
(A)n |
Simple_repeat |
| scaffold1350 |
13073 |
13222 |
+ |
RS14464 |
Unspecified |
| scaffold1350 |
14306 |
14407 |
+ |
RS9267 |
Unspecified |
| scaffold1350 |
14899 |
15057 |
+ |
RS13533 |
Unspecified |
| scaffold1350 |
18341 |
18490 |
+ |
RS14464 |
Unspecified |
| scaffold1350 |
19743 |
19810 |
+ |
A-rich |
Low_complexity |
| scaffold1350 |
20285 |
20326 |
+ |
(AAC)n |
Simple_repeat |
| scaffold1350 |
20436 |
20537 |
+ |
RS9267 |
Unspecified |
| scaffold1350 |
20810 |
20921 |
- |
RS1847 |
Unspecified |
| scaffold1350 |
22478 |
22613 |
+ |
RS18104 |
Unspecified |
| scaffold1350 |
22937 |
22973 |
+ |
(ATG)n |
Simple_repeat |
| scaffold1350 |
23139 |
23161 |
+ |
(TGT)n |
Simple_repeat |
| scaffold1350 |
25273 |
25301 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
26512 |
26613 |
+ |
RS750 |
Unspecified |
| scaffold1350 |
26750 |
26778 |
+ |
A-rich |
Low_complexity |
| scaffold1350 |
28613 |
28642 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
32741 |
32801 |
+ |
(TCA)n |
Simple_repeat |
| scaffold1350 |
33542 |
33563 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
33631 |
33674 |
+ |
(TAATGAT)n |
Simple_repeat |
| scaffold1350 |
33920 |
33980 |
+ |
RS3558 |
Unspecified |
| scaffold1350 |
35459 |
35662 |
+ |
RS8573 |
Unspecified |
| scaffold1350 |
35659 |
37192 |
- |
Copia-1_ST-I |
LTR/Copia |
| scaffold1350 |
37646 |
38429 |
- |
Copia-97_STu-I |
LTR/Copia |
| scaffold1350 |
38683 |
38735 |
- |
Copia-97_STu-I |
LTR/Copia |
| scaffold1350 |
38704 |
38908 |
- |
ATCopia85_I-int |
LTR/Copia |
| scaffold1350 |
39163 |
39221 |
- |
Copia10-PTR_I-int |
LTR/Copia |
| scaffold1350 |
39386 |
40054 |
- |
Copia10-PTR_I-int |
LTR/Copia |
| scaffold1350 |
40380 |
40572 |
+ |
RS8573 |
Unspecified |
| scaffold1350 |
43259 |
43537 |
- |
RS342 |
Unspecified |
| scaffold1350 |
43554 |
43590 |
+ |
(TTCAC)n |
Simple_repeat |
| scaffold1350 |
43912 |
43996 |
- |
RS12449 |
Unspecified |
| scaffold1350 |
44367 |
44429 |
- |
RS4475 |
Unspecified |
| scaffold1350 |
44433 |
44692 |
- |
RS858 |
Unspecified |
| scaffold1350 |
44689 |
44771 |
+ |
RS4896 |
Unspecified |
| scaffold1350 |
44770 |
44916 |
- |
PL469 |
Unspecified |
| scaffold1350 |
46825 |
46905 |
+ |
(ATT)n |
Simple_repeat |
| scaffold1350 |
47301 |
47431 |
+ |
RS10356 |
Unspecified |
| scaffold1350 |
47627 |
47827 |
- |
RS7245 |
Unspecified |
| scaffold1350 |
47656 |
48870 |
+ |
RS716 |
Unspecified |
| scaffold1350 |
49422 |
49543 |
+ |
ATGP7LTR |
LTR/Gypsy |
| scaffold1350 |
49443 |
49665 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold1350 |
50356 |
50390 |
+ |
(TTG)n |
Simple_repeat |
| scaffold1350 |
51336 |
51355 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
52029 |
52269 |
+ |
(GAACT)n |
Simple_repeat |
| scaffold1350 |
52029 |
52310 |
+ |
(GAACT)n |
Simple_repeat |
| scaffold1350 |
52230 |
52310 |
+ |
RS14529 |
Unspecified |
| scaffold1350 |
52311 |
52574 |
- |
RS356 |
Unspecified |
| scaffold1350 |
53081 |
53112 |
+ |
(CCTTCA)n |
Simple_repeat |
| scaffold1350 |
53183 |
53234 |
+ |
(AAT)n |
Simple_repeat |
| scaffold1350 |
53544 |
53638 |
+ |
RS4475 |
Unspecified |
| scaffold1350 |
59772 |
59784 |
+ |
GA-rich |
Low_complexity |
| scaffold1350 |
59785 |
59813 |
+ |
(AAAATT)n |
Simple_repeat |
| scaffold1350 |
59814 |
59850 |
+ |
GA-rich |
Low_complexity |
| scaffold1350 |
60457 |
60519 |
+ |
(ATAT)n |
Simple_repeat |
| scaffold1350 |
60522 |
60552 |
+ |
GA-rich |
Low_complexity |
| scaffold1350 |
61249 |
61277 |
+ |
A-rich |
Low_complexity |
| scaffold1350 |
61657 |
61695 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold1350 |
62053 |
62208 |
+ |
PL81 |
Unspecified |
| scaffold1350 |
62594 |
62633 |
+ |
A-rich |
Low_complexity |
| scaffold1350 |
63453 |
63503 |
+ |
(TC)n |
Simple_repeat |
| scaffold1350 |
64318 |
64552 |
+ |
PL375 |
Unspecified |
| scaffold1350 |
64752 |
65036 |
- |
RS776 |
Unspecified |
| scaffold1350 |
66152 |
66192 |
+ |
A-rich |
Low_complexity |
| scaffold1350 |
67596 |
67629 |
+ |
A-rich |
Low_complexity |
| scaffold1350 |
70110 |
70146 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold1350 |
70319 |
70425 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold1350 |
70575 |
70676 |
+ |
(ACCCG)n |
Simple_repeat |
| scaffold1350 |
70890 |
71066 |
+ |
RS156 |
Unspecified |
| scaffold1350 |
71067 |
71085 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
71302 |
71320 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
71509 |
71545 |
+ |
(ATTAATT)n |
Simple_repeat |
| scaffold1350 |
72985 |
73047 |
+ |
GA-rich |
Low_complexity |
| scaffold1350 |
73232 |
73461 |
+ |
RS376 |
Unspecified |
| scaffold1350 |
73507 |
73732 |
- |
RS13085 |
Unspecified |
| scaffold1350 |
74682 |
74782 |
+ |
RS14766 |
Unspecified |
| scaffold1350 |
74849 |
75023 |
+ |
RS376 |
Unspecified |
| scaffold1350 |
75073 |
75225 |
- |
RS13085 |
Unspecified |
| scaffold1350 |
76292 |
76417 |
+ |
(AGCTG)n |
Simple_repeat |
| scaffold1350 |
78157 |
78181 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
78683 |
78707 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
78792 |
79169 |
- |
Copia-30-I_VV |
LTR/Copia |
| scaffold1350 |
79465 |
80757 |
- |
Copia-30-I_VV |
LTR/Copia |
| scaffold1350 |
80918 |
80973 |
+ |
(CTTCCT)n |
Simple_repeat |
| scaffold1350 |
81268 |
81816 |
- |
Copia-30-I_VV |
LTR/Copia |
| scaffold1350 |
81893 |
82035 |
- |
RS4914 |
Unspecified |
| scaffold1350 |
82037 |
82060 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
82563 |
82586 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
83002 |
83052 |
+ |
(ATTTTAA)n |
Simple_repeat |
| scaffold1350 |
83195 |
83419 |
- |
RS18 |
Unspecified |
| scaffold1350 |
83952 |
84258 |
+ |
Copia-30-I_VV |
LTR/Copia |
| scaffold1350 |
87091 |
87151 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold1350 |
87390 |
87452 |
+ |
(A)n |
Simple_repeat |
| scaffold1350 |
88271 |
88310 |
+ |
(TAGTAAT)n |
Simple_repeat |
| scaffold1350 |
88315 |
88333 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
89815 |
89902 |
+ |
(AAT)n |
Simple_repeat |
| scaffold1350 |
90229 |
90256 |
+ |
(GTTGT)n |
Simple_repeat |
| scaffold1350 |
90377 |
90879 |
+ |
RS18320 |
Unspecified |
| scaffold1350 |
90880 |
91126 |
+ |
RS13793 |
Unspecified |
| scaffold1350 |
91212 |
91572 |
+ |
RS16343 |
Unspecified |
| scaffold1350 |
91935 |
92121 |
+ |
RS18062 |
Unspecified |
| scaffold1350 |
94386 |
94421 |
+ |
(A)n |
Simple_repeat |
| scaffold1350 |
94670 |
94727 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
94943 |
95206 |
+ |
RS4081 |
Unspecified |
| scaffold1350 |
95209 |
95533 |
+ |
RS2389 |
Unspecified |
| scaffold1350 |
95859 |
96115 |
+ |
RS11071 |
Unspecified |
| scaffold1350 |
96131 |
96238 |
+ |
RS10867 |
Unspecified |
| scaffold1350 |
96611 |
96775 |
+ |
RS9248 |
Unspecified |
| scaffold1350 |
96977 |
97036 |
+ |
A-rich |
Low_complexity |
| scaffold1350 |
98167 |
98407 |
+ |
RS9564 |
Unspecified |
| scaffold1350 |
98457 |
99122 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold1350 |
98582 |
98611 |
+ |
(TGA)n |
Simple_repeat |
| scaffold1350 |
99157 |
99481 |
+ |
RS2105 |
Unspecified |
| scaffold1350 |
99523 |
99710 |
+ |
RS2105 |
Unspecified |
| scaffold1350 |
99711 |
100674 |
- |
Copia-89_VV-I |
LTR/Copia |
| scaffold1350 |
100672 |
100874 |
- |
Copia-89_VV-I |
LTR/Copia |
| scaffold1350 |
100868 |
101285 |
- |
Copia-89_VV-I |
LTR/Copia |
| scaffold1350 |
102258 |
103154 |
- |
Copia-99_GM-I |
LTR/Copia |
| scaffold1350 |
103700 |
104734 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold1350 |
104153 |
104734 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold1350 |
105432 |
105475 |
+ |
A-rich |
Low_complexity |
| scaffold1350 |
105563 |
105611 |
+ |
(AACTAA)n |
Simple_repeat |
| scaffold1350 |
106678 |
106737 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
107552 |
107602 |
+ |
A-rich |
Low_complexity |
| scaffold1350 |
107677 |
108365 |
- |
RS78 |
Unspecified |
| scaffold1350 |
108785 |
108820 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold1350 |
108978 |
109004 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold1350 |
109024 |
109056 |
+ |
(T)n |
Simple_repeat |
| scaffold1350 |
109745 |
110205 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold1350 |
110443 |
110962 |
- |
RS3329 |
Unspecified |
| scaffold1350 |
111565 |
111736 |
- |
PL880 |
Unspecified |
| scaffold1350 |
111734 |
112157 |
- |
PL880 |
Unspecified |
| scaffold1350 |
111978 |
112255 |
+ |
RS616 |
Unspecified |
| scaffold1350 |
113109 |
113147 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold1350 |
114886 |
114924 |
+ |
RS2390 |
Unspecified |
| scaffold1350 |
115781 |
115828 |
+ |
(TC)n |
Simple_repeat |
| scaffold1350 |
116332 |
116589 |
+ |
RS736 |
Unspecified |
| scaffold1350 |
116735 |
117271 |
- |
RS72 |
Unspecified |
| scaffold1350 |
117493 |
117542 |
+ |
A-rich |
Low_complexity |