scaffold13600 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold13600 |
57 |
558 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold13600 |
2215 |
3103 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold13600 |
3325 |
3707 |
- |
PL911 |
Unspecified |
| scaffold13600 |
4246 |
4946 |
+ |
PL530 |
Unspecified |
| scaffold13600 |
4946 |
5462 |
+ |
TORTL1 |
LTR/Copia |
| scaffold13600 |
5044 |
5101 |
+ |
(GATTTT)n |
Simple_repeat |
| scaffold13600 |
5452 |
5841 |
+ |
GmCOPIA10_I-int |
LTR/Copia |
| scaffold13600 |
5872 |
6404 |
+ |
RS21 |
Unspecified |
| scaffold13600 |
6429 |
6617 |
+ |
RS2506 |
Unspecified |
| scaffold13600 |
8508 |
8877 |
- |
RS703 |
Unspecified |
| scaffold13600 |
8699 |
8924 |
+ |
RS2145 |
Unspecified |
| scaffold13600 |
9176 |
9226 |
+ |
(TAA)n |
Simple_repeat |
| scaffold13600 |
10375 |
10947 |
- |
PL301 |
Unspecified |
| scaffold13600 |
11589 |
11618 |
+ |
(T)n |
Simple_repeat |
| scaffold13600 |
12418 |
12456 |
+ |
(AATA)n |
Simple_repeat |
| scaffold13600 |
12643 |
12669 |
+ |
(T)n |
Simple_repeat |
| scaffold13600 |
13169 |
13214 |
+ |
GA-rich |
Low_complexity |
| scaffold13600 |
15267 |
15298 |
+ |
(T)n |
Simple_repeat |
| scaffold13600 |
15885 |
15915 |
+ |
A-rich |
Low_complexity |
| scaffold13600 |
17372 |
17407 |
+ |
(AATATT)n |
Simple_repeat |
| scaffold13600 |
18714 |
18941 |
+ |
RS15271 |
Unspecified |
| scaffold13600 |
19310 |
19475 |
+ |
PL712 |
Unspecified |
| scaffold13600 |
21782 |
21947 |
+ |
PL688 |
Unspecified |
| scaffold13600 |
22171 |
22217 |
+ |
(TT)n |
Simple_repeat |
| scaffold13600 |
22252 |
22339 |
+ |
(CCA)n |
Simple_repeat |
| scaffold13600 |
22430 |
22509 |
+ |
(ATTTAAG)n |
Simple_repeat |
| scaffold13600 |
22533 |
22639 |
- |
PL370 |
Unspecified |
| scaffold13600 |
22706 |
22735 |
+ |
(A)n |
Simple_repeat |
| scaffold13600 |
23864 |
23923 |
+ |
A-rich |
Low_complexity |
| scaffold13600 |
24660 |
24743 |
+ |
RS16147 |
Unspecified |
| scaffold13600 |
25167 |
25417 |
- |
RS16147 |
Unspecified |
| scaffold13600 |
25664 |
25987 |
- |
PL470 |
Unspecified |
| scaffold13600 |
26068 |
26162 |
- |
PL470 |
Unspecified |
| scaffold13600 |
26192 |
26225 |
+ |
(TATA)n |
Simple_repeat |
| scaffold13600 |
26679 |
26728 |
+ |
(TTAATA)n |
Simple_repeat |
| scaffold13600 |
27303 |
27340 |
+ |
(ATATTT)n |
Simple_repeat |
| scaffold13600 |
28011 |
28050 |
+ |
G-rich |
Low_complexity |
| scaffold13600 |
28550 |
28580 |
+ |
(TTCCC)n |
Simple_repeat |
| scaffold13600 |
29135 |
29158 |
+ |
(CCT)n |
Simple_repeat |
| scaffold13600 |
29461 |
29496 |
+ |
(T)n |
Simple_repeat |
| scaffold13600 |
29694 |
29747 |
+ |
A-rich |
Low_complexity |
| scaffold13600 |
30043 |
30089 |
+ |
(ATCA)n |
Simple_repeat |
| scaffold13600 |
30479 |
30546 |
+ |
A-rich |
Low_complexity |
| scaffold13600 |
30851 |
30895 |
+ |
MuDR-4_GM |
DNA/MULE-MuDR |
| scaffold13600 |
30994 |
31040 |
+ |
(TGA)n |
Simple_repeat |
| scaffold13600 |
31100 |
31158 |
+ |
(TAT)n |
Simple_repeat |
| scaffold13600 |
31413 |
31454 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold13600 |
31702 |
31739 |
+ |
(A)n |
Simple_repeat |
| scaffold13600 |
32252 |
32277 |
+ |
(A)n |
Simple_repeat |
| scaffold13600 |
32415 |
32602 |
- |
RS3396 |
Unspecified |
| scaffold13600 |
32626 |
32905 |
- |
RS2365 |
Unspecified |
| scaffold13600 |
32885 |
33201 |
+ |
RS2166 |
Unspecified |
| scaffold13600 |
33293 |
34110 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold13600 |
34255 |
34322 |
+ |
(GTTTGT)n |
Simple_repeat |
| scaffold13600 |
34357 |
34813 |
- |
PL567 |
Unspecified |
| scaffold13600 |
35653 |
36659 |
- |
RS265 |
Unspecified |
| scaffold13600 |
36662 |
36858 |
+ |
PL306 |
Unspecified |
| scaffold13600 |
36878 |
37138 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold13600 |
37182 |
37419 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold13600 |
39040 |
39082 |
+ |
(TCAAG)n |
Simple_repeat |
| scaffold13600 |
40146 |
40790 |
- |
RS984 |
Unspecified |
| scaffold13600 |
41944 |
41987 |
- |
Gypsy-39_BD-I |
LTR/Gypsy |
| scaffold13600 |
42346 |
42421 |
+ |
A-rich |
Low_complexity |
| scaffold13600 |
42500 |
42703 |
- |
RS265 |
Unspecified |
| scaffold13600 |
43425 |
44410 |
+ |
RS446 |
Unspecified |
| scaffold13600 |
44597 |
44652 |
+ |
(GTT)n |
Simple_repeat |
| scaffold13600 |
45115 |
45183 |
- |
RS51 |
Unspecified |
| scaffold13600 |
47200 |
48306 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold13600 |
47213 |
47876 |
- |
ATLINE1_12 |
LINE/L1 |
| scaffold13600 |
47941 |
48060 |
- |
ATLINE1_12 |
LINE/L1 |
| scaffold13600 |
48763 |
48856 |
- |
L1-2_STu |
LINE/L1 |
| scaffold13600 |
51452 |
51470 |
+ |
(ATC)n |
Simple_repeat |
| scaffold13600 |
52226 |
52279 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold13600 |
52805 |
53150 |
+ |
RS9613 |
Unspecified |
| scaffold13600 |
52987 |
53416 |
+ |
RS1545 |
Unspecified |
| scaffold13600 |
53125 |
54395 |
+ |
RS488 |
Unspecified |
| scaffold13600 |
54959 |
55161 |
+ |
RS488 |
Unspecified |
| scaffold13600 |
55074 |
55174 |
- |
RS51 |
Unspecified |
| scaffold13600 |
57384 |
57431 |
+ |
(GCTTAGT)n |
Simple_repeat |
| scaffold13600 |
57563 |
57906 |
+ |
RS1446 |
Unspecified |
| scaffold13600 |
58267 |
58298 |
+ |
A-rich |
Low_complexity |
| scaffold13600 |
59078 |
59109 |
+ |
A-rich |
Low_complexity |
| scaffold13600 |
59110 |
59131 |
+ |
(TATAACA)n |
Simple_repeat |
| scaffold13600 |
60313 |
60373 |
+ |
(TTCACTA)n |
Simple_repeat |
| scaffold13600 |
60374 |
60816 |
+ |
PL951 |
Unspecified |
| scaffold13600 |
61144 |
61212 |
+ |
(TTTCAATA)n |
Simple_repeat |
| scaffold13600 |
61313 |
61420 |
+ |
RS875 |
Unspecified |
| scaffold13600 |
61814 |
61864 |
+ |
(TTATTAA)n |
Simple_repeat |
| scaffold13600 |
62141 |
62211 |
+ |
(AACATA)n |
Simple_repeat |
| scaffold13600 |
62601 |
62662 |
+ |
(TAT)n |
Simple_repeat |
| scaffold13600 |
62977 |
63007 |
+ |
GA-rich |
Low_complexity |
| scaffold13600 |
63361 |
63388 |
+ |
(T)n |
Simple_repeat |
| scaffold13600 |
63605 |
63648 |
+ |
(GTATTT)n |
Simple_repeat |
| scaffold13600 |
63738 |
64541 |
- |
RETROSAT5_I-int |
LTR/Gypsy |
| scaffold13600 |
64477 |
64541 |
- |
RETROSAT5_I-int |
LTR/Gypsy |