scaffold13649 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold13649 |
354 |
460 |
+ |
RAM13_I_MT-int |
LTR |
| scaffold13649 |
1237 |
1267 |
+ |
(ATG)n |
Simple_repeat |
| scaffold13649 |
1379 |
2452 |
+ |
RS410 |
Unspecified |
| scaffold13649 |
2793 |
2918 |
- |
PL172 |
Unspecified |
| scaffold13649 |
3022 |
4096 |
- |
Copia-35_SB-I |
LTR/Copia |
| scaffold13649 |
4087 |
4489 |
- |
RS16534 |
Unspecified |
| scaffold13649 |
4667 |
5128 |
+ |
RS2217 |
Unspecified |
| scaffold13649 |
4993 |
6217 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold13649 |
5267 |
6217 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold13649 |
5315 |
5903 |
- |
Copia-39_BRa-I |
LTR/Copia |
| scaffold13649 |
6101 |
6874 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold13649 |
6527 |
6723 |
- |
Copia-39_BRa-I |
LTR/Copia |
| scaffold13649 |
7034 |
7155 |
- |
RS4907 |
Unspecified |
| scaffold13649 |
8477 |
8546 |
- |
RS1258 |
Unspecified |
| scaffold13649 |
9065 |
9115 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold13649 |
9627 |
9661 |
+ |
(TA)n |
Simple_repeat |
| scaffold13649 |
9678 |
9896 |
+ |
RS4 |
Unspecified |
| scaffold13649 |
11052 |
11095 |
+ |
(TAT)n |
Simple_repeat |
| scaffold13649 |
13889 |
13918 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold13649 |
14659 |
14728 |
+ |
(ATTATA)n |
Simple_repeat |
| scaffold13649 |
15071 |
15121 |
- |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold13649 |
16485 |
16508 |
+ |
(TA)n |
Simple_repeat |
| scaffold13649 |
16716 |
16778 |
+ |
(ATTTTAC)n |
Simple_repeat |
| scaffold13649 |
17746 |
17767 |
+ |
(A)n |
Simple_repeat |
| scaffold13649 |
18077 |
18107 |
+ |
(A)n |
Simple_repeat |
| scaffold13649 |
18942 |
18981 |
+ |
(ATTAT)n |
Simple_repeat |
| scaffold13649 |
19612 |
19754 |
+ |
RS18111 |
Unspecified |
| scaffold13649 |
20054 |
20083 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold13649 |
20221 |
20260 |
+ |
(ATTAT)n |
Simple_repeat |
| scaffold13649 |
21081 |
21110 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold13649 |
28945 |
29048 |
- |
RS11460 |
Unspecified |
| scaffold13649 |
29129 |
29230 |
+ |
RS9195 |
Unspecified |
| scaffold13649 |
31201 |
31237 |
+ |
(AACATC)n |
Simple_repeat |
| scaffold13649 |
31530 |
31560 |
+ |
GA-rich |
Low_complexity |
| scaffold13649 |
31682 |
31706 |
+ |
(ATT)n |
Simple_repeat |
| scaffold13649 |
31767 |
31829 |
+ |
(ATT)n |
Simple_repeat |
| scaffold13649 |
32306 |
32421 |
- |
RS329 |
Unspecified |
| scaffold13649 |
33093 |
33122 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
33201 |
33259 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold13649 |
33325 |
33366 |
+ |
(ATTTTTA)n |
Simple_repeat |
| scaffold13649 |
33523 |
33562 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
33578 |
33915 |
+ |
RS4109 |
Unspecified |
| scaffold13649 |
33804 |
34001 |
- |
RS1441 |
Unspecified |
| scaffold13649 |
34003 |
34127 |
+ |
RS11007 |
Unspecified |
| scaffold13649 |
34025 |
34233 |
- |
RS11007 |
Unspecified |
| scaffold13649 |
34119 |
34252 |
- |
RS1815 |
Unspecified |
| scaffold13649 |
34253 |
34327 |
- |
RS1441 |
Unspecified |
| scaffold13649 |
34368 |
34430 |
+ |
(ATT)n |
Simple_repeat |
| scaffold13649 |
36878 |
36902 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
36926 |
36962 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
36978 |
37126 |
+ |
RS13906 |
Unspecified |
| scaffold13649 |
37328 |
37366 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold13649 |
37373 |
37504 |
+ |
RS12082 |
Unspecified |
| scaffold13649 |
38039 |
38314 |
+ |
RS11850 |
Unspecified |
| scaffold13649 |
38252 |
38391 |
+ |
RS17066 |
Unspecified |
| scaffold13649 |
39846 |
39953 |
- |
RS982 |
Unspecified |
| scaffold13649 |
40173 |
40384 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
40358 |
40384 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
41401 |
41522 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold13649 |
41541 |
41634 |
- |
PL81 |
Unspecified |
| scaffold13649 |
41930 |
41956 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold13649 |
42298 |
42546 |
- |
RS145 |
Unspecified |
| scaffold13649 |
44817 |
44865 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold13649 |
44952 |
45020 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold13649 |
45153 |
45242 |
- |
RS542 |
Unspecified |
| scaffold13649 |
45236 |
45283 |
+ |
RS542 |
Unspecified |
| scaffold13649 |
45788 |
46040 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold13649 |
47626 |
47855 |
+ |
RS16307 |
Unspecified |
| scaffold13649 |
48089 |
48115 |
+ |
(TTG)n |
Simple_repeat |
| scaffold13649 |
48447 |
48614 |
+ |
(ATT)n |
Simple_repeat |
| scaffold13649 |
48447 |
48539 |
+ |
(ATT)n |
Simple_repeat |
| scaffold13649 |
48526 |
48614 |
- |
RS9843 |
Unspecified |
| scaffold13649 |
48541 |
48649 |
+ |
RS185 |
Unspecified |
| scaffold13649 |
48647 |
48734 |
+ |
RS185 |
Unspecified |
| scaffold13649 |
50001 |
50017 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
50494 |
50510 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
50511 |
50560 |
+ |
(AACCCTT)n |
Simple_repeat |
| scaffold13649 |
50561 |
50578 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
50724 |
50851 |
+ |
RS18 |
Unspecified |
| scaffold13649 |
50865 |
50924 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold13649 |
51018 |
51040 |
+ |
(A)n |
Simple_repeat |
| scaffold13649 |
51038 |
51094 |
+ |
RS18 |
Unspecified |
| scaffold13649 |
52014 |
52097 |
+ |
RS170 |
Unspecified |
| scaffold13649 |
52272 |
52378 |
+ |
RS16382 |
Unspecified |
| scaffold13649 |
52277 |
52457 |
+ |
(AATT)n |
Simple_repeat |
| scaffold13649 |
52390 |
52457 |
+ |
(AATT)n |
Simple_repeat |
| scaffold13649 |
52502 |
52821 |
- |
PL771 |
Unspecified |
| scaffold13649 |
53394 |
53477 |
+ |
RS170 |
Unspecified |
| scaffold13649 |
53652 |
53758 |
+ |
RS16382 |
Unspecified |
| scaffold13649 |
53657 |
53837 |
+ |
(AATT)n |
Simple_repeat |
| scaffold13649 |
53770 |
53837 |
+ |
(AATT)n |
Simple_repeat |
| scaffold13649 |
53988 |
55002 |
+ |
PL840 |
Unspecified |
| scaffold13649 |
55175 |
55218 |
+ |
(ATAGCT)n |
Simple_repeat |
| scaffold13649 |
55458 |
55572 |
+ |
RS26 |
Unspecified |
| scaffold13649 |
55611 |
55698 |
- |
LTR-2_MX-LTR |
LTR |
| scaffold13649 |
56171 |
56271 |
+ |
RS1726 |
Unspecified |
| scaffold13649 |
58934 |
59050 |
+ |
RS972 |
Unspecified |
| scaffold13649 |
61385 |
61425 |
+ |
(AAAAAAC)n |
Simple_repeat |
| scaffold13649 |
62732 |
62760 |
+ |
(ATAAAA)n |
Simple_repeat |
| scaffold13649 |
62878 |
63107 |
- |
RS15131 |
Unspecified |
| scaffold13649 |
63361 |
63410 |
+ |
(TTTTAAT)n |
Simple_repeat |
| scaffold13649 |
63500 |
63597 |
- |
RS1674 |
Unspecified |
| scaffold13649 |
64302 |
64413 |
+ |
RS4475 |
Unspecified |
| scaffold13649 |
64761 |
64812 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold13649 |
66555 |
66574 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
67678 |
67708 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold13649 |
68304 |
68322 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
69029 |
69059 |
+ |
(GTT)n |
Simple_repeat |
| scaffold13649 |
71684 |
71796 |
- |
PL322 |
Unspecified |
| scaffold13649 |
71774 |
71852 |
- |
PL619 |
Unspecified |
| scaffold13649 |
72613 |
72663 |
+ |
Copia-39_BRa-I |
LTR/Copia |
| scaffold13649 |
74792 |
74867 |
- |
SINE2-1_PD |
SINE/tRNA-RTE |
| scaffold13649 |
75169 |
75238 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
75357 |
75381 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
75541 |
75865 |
- |
RS8 |
Unspecified |
| scaffold13649 |
76100 |
76166 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
76237 |
76267 |
+ |
(TATTTA)n |
Simple_repeat |
| scaffold13649 |
76725 |
76748 |
+ |
(ACA)n |
Simple_repeat |
| scaffold13649 |
76791 |
76866 |
- |
SINE2-1_PD |
SINE/tRNA-RTE |
| scaffold13649 |
77168 |
77237 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
77639 |
77840 |
- |
RS757 |
Unspecified |
| scaffold13649 |
81176 |
81227 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold13649 |
82442 |
82496 |
- |
RS12666 |
Unspecified |
| scaffold13649 |
82498 |
82854 |
- |
PL270 |
Unspecified |
| scaffold13649 |
83109 |
83254 |
+ |
RS2106 |
Unspecified |
| scaffold13649 |
83255 |
83613 |
+ |
RS5402 |
Unspecified |
| scaffold13649 |
83683 |
83752 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
83750 |
83792 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
87176 |
87219 |
+ |
(AAAAAT)n |
Simple_repeat |
| scaffold13649 |
89752 |
89904 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold13649 |
91065 |
91145 |
- |
RS8470 |
Unspecified |
| scaffold13649 |
91529 |
91572 |
+ |
(AATAT)n |
Simple_repeat |
| scaffold13649 |
91997 |
92752 |
- |
ZhAT2_ZM |
DNA/hAT-Tip100 |
| scaffold13649 |
93456 |
93608 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold13649 |
94636 |
94660 |
+ |
(ATG)n |
Simple_repeat |
| scaffold13649 |
96595 |
96641 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold13649 |
96642 |
96720 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold13649 |
97318 |
97398 |
- |
RS8470 |
Unspecified |
| scaffold13649 |
97706 |
97766 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold13649 |
97878 |
97939 |
+ |
(TAATA)n |
Simple_repeat |
| scaffold13649 |
98127 |
98629 |
- |
RS89 |
Unspecified |
| scaffold13649 |
99095 |
99192 |
- |
RS1 |
Unspecified |
| scaffold13649 |
103273 |
103511 |
+ |
RS1240 |
Unspecified |
| scaffold13649 |
103763 |
103784 |
+ |
(ATG)n |
Simple_repeat |
| scaffold13649 |
105704 |
105750 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold13649 |
105751 |
105829 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold13649 |
106305 |
106335 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
106411 |
106435 |
+ |
(A)n |
Simple_repeat |
| scaffold13649 |
106484 |
106567 |
- |
RS8470 |
Unspecified |
| scaffold13649 |
106579 |
106639 |
+ |
(TT)n |
Simple_repeat |
| scaffold13649 |
107004 |
107047 |
+ |
(AATAT)n |
Simple_repeat |
| scaffold13649 |
107472 |
109704 |
- |
ZhAT2_ZM |
DNA/hAT-Tip100 |
| scaffold13649 |
110081 |
110176 |
+ |
(ACAA)n |
Simple_repeat |
| scaffold13649 |
110420 |
110458 |
+ |
(GTG)n |
Simple_repeat |
| scaffold13649 |
110539 |
110552 |
+ |
(TTCTTTT)n |
Simple_repeat |
| scaffold13649 |
110553 |
110580 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
111873 |
112082 |
- |
PL483 |
Unspecified |
| scaffold13649 |
112102 |
112128 |
+ |
(AACCG)n |
Simple_repeat |
| scaffold13649 |
112586 |
112635 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
113140 |
113168 |
+ |
(ATTG)n |
Simple_repeat |
| scaffold13649 |
113832 |
113999 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold13649 |
114000 |
114052 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold13649 |
115589 |
115666 |
- |
RS54 |
Unspecified |
| scaffold13649 |
115669 |
115844 |
- |
RS209 |
Unspecified |
| scaffold13649 |
116484 |
116533 |
+ |
(ATTAATT)n |
Simple_repeat |
| scaffold13649 |
116768 |
116790 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
117397 |
117576 |
- |
RS13085 |
Unspecified |
| scaffold13649 |
117785 |
117814 |
+ |
(AAT)n |
Simple_repeat |
| scaffold13649 |
117946 |
117974 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
119699 |
119735 |
+ |
(TTACTAA)n |
Simple_repeat |
| scaffold13649 |
120346 |
120388 |
+ |
(TAA)n |
Simple_repeat |
| scaffold13649 |
121202 |
121352 |
- |
RS384 |
Unspecified |
| scaffold13649 |
121823 |
121858 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
122713 |
122748 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
123150 |
123332 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold13649 |
124090 |
124134 |
+ |
(CCCAA)n |
Simple_repeat |
| scaffold13649 |
124761 |
124805 |
+ |
(CCCAA)n |
Simple_repeat |
| scaffold13649 |
124921 |
124950 |
+ |
(TTC)n |
Simple_repeat |
| scaffold13649 |
125043 |
125062 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
125149 |
125201 |
+ |
(GTTTTA)n |
Simple_repeat |
| scaffold13649 |
127987 |
128016 |
+ |
(TTGTT)n |
Simple_repeat |
| scaffold13649 |
128441 |
128606 |
- |
RS5 |
Unspecified |
| scaffold13649 |
128605 |
128684 |
- |
RS5 |
Unspecified |
| scaffold13649 |
128713 |
128922 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold13649 |
131525 |
131547 |
+ |
(A)n |
Simple_repeat |
| scaffold13649 |
132369 |
132377 |
+ |
(AACAA)n |
Simple_repeat |
| scaffold13649 |
132378 |
132405 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
132406 |
132412 |
+ |
(AACAA)n |
Simple_repeat |
| scaffold13649 |
134149 |
134329 |
+ |
RS4 |
Unspecified |
| scaffold13649 |
134386 |
134411 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
134498 |
134543 |
+ |
(TAA)n |
Simple_repeat |
| scaffold13649 |
136136 |
137389 |
+ |
(TAA)n |
Simple_repeat |
| scaffold13649 |
137337 |
137389 |
+ |
(TAA)n |
Simple_repeat |
| scaffold13649 |
138209 |
138268 |
+ |
G-rich |
Low_complexity |
| scaffold13649 |
138971 |
139054 |
+ |
(TTTTGT)n |
Simple_repeat |
| scaffold13649 |
139259 |
139308 |
+ |
(CTAAT)n |
Simple_repeat |
| scaffold13649 |
139426 |
139468 |
+ |
(TACTA)n |
Simple_repeat |
| scaffold13649 |
139508 |
139563 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
139633 |
139675 |
+ |
(TCACTTT)n |
Simple_repeat |
| scaffold13649 |
139763 |
139799 |
+ |
(TAT)n |
Simple_repeat |
| scaffold13649 |
140577 |
140668 |
- |
RS12449 |
Unspecified |
| scaffold13649 |
141264 |
141297 |
+ |
(GGT)n |
Simple_repeat |
| scaffold13649 |
141434 |
141456 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
141842 |
142068 |
- |
RS4635 |
Unspecified |
| scaffold13649 |
142230 |
142631 |
+ |
RS3243 |
Unspecified |
| scaffold13649 |
142642 |
142806 |
+ |
RS4216 |
Unspecified |
| scaffold13649 |
143043 |
143187 |
- |
RS2006 |
Unspecified |
| scaffold13649 |
143225 |
143716 |
- |
RS5259 |
Unspecified |
| scaffold13649 |
143495 |
143756 |
- |
RS3281 |
Unspecified |
| scaffold13649 |
143851 |
143885 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
148347 |
148376 |
+ |
(TTAAG)n |
Simple_repeat |
| scaffold13649 |
148723 |
148772 |
+ |
(ATT)n |
Simple_repeat |
| scaffold13649 |
149215 |
149299 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold13649 |
149305 |
149716 |
- |
RS15961 |
Unspecified |
| scaffold13649 |
149866 |
150362 |
- |
RS17663 |
Unspecified |
| scaffold13649 |
150386 |
150512 |
- |
RS15285 |
Unspecified |
| scaffold13649 |
150650 |
150699 |
+ |
(ATT)n |
Simple_repeat |
| scaffold13649 |
151142 |
151226 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold13649 |
151239 |
151320 |
- |
RS908 |
Unspecified |
| scaffold13649 |
151303 |
151714 |
- |
RS15961 |
Unspecified |
| scaffold13649 |
151864 |
152360 |
- |
RS17663 |
Unspecified |
| scaffold13649 |
152384 |
152510 |
- |
RS15285 |
Unspecified |
| scaffold13649 |
154010 |
154142 |
- |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold13649 |
154259 |
154338 |
+ |
RS10 |
Unspecified |
| scaffold13649 |
154410 |
154646 |
+ |
RS4 |
Unspecified |
| scaffold13649 |
155362 |
155448 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold13649 |
156211 |
156364 |
- |
PL296 |
Unspecified |
| scaffold13649 |
156439 |
157001 |
- |
RS1227 |
Unspecified |
| scaffold13649 |
156575 |
157080 |
+ |
RS7261 |
Unspecified |
| scaffold13649 |
157273 |
157308 |
+ |
RS148 |
Unspecified |
| scaffold13649 |
157314 |
157496 |
- |
PL296 |
Unspecified |
| scaffold13649 |
161977 |
162226 |
+ |
RS4 |
Unspecified |
| scaffold13649 |
162515 |
162639 |
- |
RS127 |
Unspecified |
| scaffold13649 |
162685 |
162750 |
+ |
RS127 |
Unspecified |
| scaffold13649 |
162908 |
162941 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
163288 |
163323 |
+ |
(ACTTTAA)n |
Simple_repeat |
| scaffold13649 |
164064 |
164119 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
164138 |
164314 |
- |
Helitron4 |
RC/Helitron |
| scaffold13649 |
164627 |
164724 |
- |
RS11056 |
Unspecified |
| scaffold13649 |
165092 |
165126 |
+ |
PL859 |
Unspecified |
| scaffold13649 |
165212 |
165250 |
+ |
(ATACAAT)n |
Simple_repeat |
| scaffold13649 |
165669 |
165771 |
- |
RS9298 |
Unspecified |
| scaffold13649 |
166336 |
166409 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
166725 |
166773 |
+ |
(TT)n |
Simple_repeat |
| scaffold13649 |
167171 |
167235 |
+ |
A-rich |
Low_complexity |
| scaffold13649 |
167842 |
168026 |
+ |
RS178 |
Unspecified |
| scaffold13649 |
168058 |
168084 |
+ |
(T)n |
Simple_repeat |
| scaffold13649 |
168191 |
168208 |
+ |
(A)n |
Simple_repeat |