scaffold1409 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold1409 |
1435 |
1469 |
+ |
(CATCCT)n |
Simple_repeat |
| scaffold1409 |
4797 |
4960 |
- |
PL905 |
Unspecified |
| scaffold1409 |
4974 |
5170 |
+ |
RS10607 |
Unspecified |
| scaffold1409 |
5190 |
5335 |
+ |
RS8848 |
Unspecified |
| scaffold1409 |
5290 |
5442 |
+ |
RS8848 |
Unspecified |
| scaffold1409 |
5397 |
5557 |
+ |
RS8848 |
Unspecified |
| scaffold1409 |
5939 |
6004 |
- |
Copia-109_BRa-I |
LTR/Copia |
| scaffold1409 |
5942 |
6017 |
- |
ATGP5LTR |
LTR/Gypsy |
| scaffold1409 |
6009 |
6081 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold1409 |
6168 |
7391 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold1409 |
6362 |
7145 |
- |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold1409 |
7849 |
8031 |
- |
RS2023 |
Unspecified |
| scaffold1409 |
8029 |
8092 |
- |
PL905 |
Unspecified |
| scaffold1409 |
8091 |
8531 |
- |
RS2965 |
Unspecified |
| scaffold1409 |
8895 |
8955 |
+ |
(TAGTTT)n |
Simple_repeat |
| scaffold1409 |
8932 |
8978 |
+ |
(TTTCATA)n |
Simple_repeat |
| scaffold1409 |
9218 |
9252 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold1409 |
9363 |
9375 |
+ |
A-rich |
Low_complexity |
| scaffold1409 |
9376 |
9421 |
+ |
(ATTAAT)n |
Simple_repeat |
| scaffold1409 |
9431 |
9679 |
+ |
L1-1_PTr |
LINE/L1 |
| scaffold1409 |
9963 |
10087 |
- |
RS4209 |
Unspecified |
| scaffold1409 |
10084 |
10222 |
- |
RS4209 |
Unspecified |
| scaffold1409 |
11994 |
12261 |
- |
RS10 |
Unspecified |
| scaffold1409 |
12264 |
12324 |
+ |
(TTTTATA)n |
Simple_repeat |
| scaffold1409 |
12474 |
12492 |
+ |
(T)n |
Simple_repeat |
| scaffold1409 |
14851 |
14889 |
+ |
(CCTTCT)n |
Simple_repeat |
| scaffold1409 |
16177 |
16726 |
- |
RS362 |
Unspecified |
| scaffold1409 |
17863 |
18468 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold1409 |
18046 |
18441 |
- |
LINE1I_MT |
LINE/L1 |
| scaffold1409 |
18561 |
18610 |
- |
LINE1-24_ZM |
LINE/L1 |
| scaffold1409 |
18961 |
19024 |
- |
Gypsy-32_Mad-LTR |
LTR/Gypsy |
| scaffold1409 |
18972 |
19073 |
- |
Copia-58_VV-LTR |
LTR/Copia |
| scaffold1409 |
19186 |
19401 |
+ |
RS844 |
Unspecified |
| scaffold1409 |
19379 |
19635 |
+ |
RS4444 |
Unspecified |
| scaffold1409 |
19694 |
20342 |
- |
Copia-2_SL-I |
LTR/Copia |
| scaffold1409 |
20701 |
22007 |
- |
Copia-2_SL-I |
LTR/Copia |
| scaffold1409 |
22245 |
22709 |
- |
Copia-2_SL-I |
LTR/Copia |
| scaffold1409 |
22989 |
23123 |
- |
Copia-2_SL-LTR |
LTR/Copia |
| scaffold1409 |
22990 |
23043 |
+ |
PL596 |
Unspecified |
| scaffold1409 |
23046 |
23123 |
- |
Copia-2_SL-LTR |
LTR/Copia |
| scaffold1409 |
23244 |
23459 |
+ |
RS844 |
Unspecified |
| scaffold1409 |
24053 |
24538 |
+ |
RS13658 |
Unspecified |
| scaffold1409 |
27115 |
27142 |
+ |
(G)n |
Simple_repeat |
| scaffold1409 |
29552 |
29609 |
+ |
(GTGTAT)n |
Simple_repeat |
| scaffold1409 |
29826 |
29897 |
+ |
(GAGCTG)n |
Simple_repeat |
| scaffold1409 |
30155 |
30186 |
+ |
(GAAGTT)n |
Simple_repeat |
| scaffold1409 |
30725 |
30791 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold1409 |
31054 |
31584 |
+ |
RS3423 |
Unspecified |
| scaffold1409 |
31711 |
31861 |
- |
RIRE1_I-int |
LTR/Copia |
| scaffold1409 |
31817 |
31923 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold1409 |
31957 |
32089 |
- |
RS7557 |
Unspecified |
| scaffold1409 |
32609 |
32639 |
+ |
(AAATAA)n |
Simple_repeat |
| scaffold1409 |
34192 |
34332 |
+ |
RS10129 |
Unspecified |
| scaffold1409 |
38400 |
38424 |
+ |
(T)n |
Simple_repeat |
| scaffold1409 |
38648 |
38678 |
+ |
(ACTATT)n |
Simple_repeat |
| scaffold1409 |
39013 |
39058 |
+ |
(TTGAATA)n |
Simple_repeat |
| scaffold1409 |
39070 |
39434 |
- |
RS1239 |
Unspecified |
| scaffold1409 |
39639 |
39663 |
+ |
(ATCA)n |
Simple_repeat |
| scaffold1409 |
39822 |
39854 |
+ |
A-rich |
Low_complexity |
| scaffold1409 |
40329 |
40372 |
+ |
(AAT)n |
Simple_repeat |
| scaffold1409 |
40435 |
40579 |
+ |
RS54 |
Unspecified |
| scaffold1409 |
41736 |
41774 |
+ |
(TAAACAT)n |
Simple_repeat |
| scaffold1409 |
41782 |
41835 |
+ |
(AAT)n |
Simple_repeat |
| scaffold1409 |
43027 |
43079 |
- |
PL375 |
Unspecified |
| scaffold1409 |
43274 |
43376 |
+ |
(ATA)n |
Simple_repeat |
| scaffold1409 |
43450 |
43822 |
+ |
RS2999 |
Unspecified |
| scaffold1409 |
43781 |
43828 |
- |
PL375 |
Unspecified |
| scaffold1409 |
43890 |
43911 |
+ |
(T)n |
Simple_repeat |
| scaffold1409 |
44000 |
44075 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold1409 |
44155 |
44197 |
+ |
(TTGT)n |
Simple_repeat |
| scaffold1409 |
44790 |
44838 |
+ |
A-rich |
Low_complexity |
| scaffold1409 |
45258 |
45300 |
+ |
(TAATGA)n |
Simple_repeat |
| scaffold1409 |
45301 |
45309 |
+ |
(TAATTGA)n |
Simple_repeat |
| scaffold1409 |
45411 |
45432 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold1409 |
46549 |
46822 |
+ |
RS14872 |
Unspecified |
| scaffold1409 |
46835 |
46936 |
+ |
RS18365 |
Unspecified |
| scaffold1409 |
47444 |
47546 |
+ |
RS14794 |
Unspecified |
| scaffold1409 |
47911 |
47989 |
+ |
RS14794 |
Unspecified |
| scaffold1409 |
48803 |
48905 |
+ |
RS14794 |
Unspecified |
| scaffold1409 |
51848 |
51864 |
+ |
(A)n |
Simple_repeat |
| scaffold1409 |
54807 |
54875 |
+ |
(AAT)n |
Simple_repeat |
| scaffold1409 |
57190 |
57216 |
+ |
(A)n |
Simple_repeat |
| scaffold1409 |
63310 |
63332 |
+ |
(A)n |
Simple_repeat |
| scaffold1409 |
63613 |
63650 |
+ |
(TTTTATG)n |
Simple_repeat |
| scaffold1409 |
63915 |
64073 |
- |
RS3262 |
Unspecified |
| scaffold1409 |
64078 |
64316 |
+ |
RS4 |
Unspecified |
| scaffold1409 |
64336 |
64563 |
- |
RS5762 |
Unspecified |
| scaffold1409 |
64884 |
64970 |
+ |
(ATCTGAAGTT)n |
Simple_repeat |
| scaffold1409 |
65641 |
65700 |
+ |
G-rich |
Low_complexity |
| scaffold1409 |
66455 |
66488 |
+ |
(T)n |
Simple_repeat |
| scaffold1409 |
66855 |
66873 |
+ |
(A)n |
Simple_repeat |
| scaffold1409 |
67254 |
67295 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold1409 |
67296 |
67314 |
+ |
(T)n |
Simple_repeat |
| scaffold1409 |
67315 |
67321 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold1409 |
67383 |
67432 |
+ |
(TTTGAT)n |
Simple_repeat |
| scaffold1409 |
67478 |
67514 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold1409 |
71354 |
71693 |
+ |
RS5572 |
Unspecified |
| scaffold1409 |
71548 |
71841 |
+ |
RS12762 |
Unspecified |
| scaffold1409 |
72574 |
72781 |
- |
PL958 |
Unspecified |
| scaffold1409 |
74993 |
75139 |
- |
Athila6B_I-int |
LTR/Gypsy |
| scaffold1409 |
75650 |
75683 |
+ |
A-rich |
Low_complexity |
| scaffold1409 |
76137 |
76267 |
- |
Gypsy-30_GM-I |
LTR/Gypsy |
| scaffold1409 |
77679 |
77779 |
+ |
RS1160 |
Unspecified |
| scaffold1409 |
79205 |
79269 |
+ |
A-rich |
Low_complexity |
| scaffold1409 |
79376 |
79413 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold1409 |
79552 |
79598 |
- |
PL50 |
Unspecified |
| scaffold1409 |
80123 |
80142 |
+ |
(AAT)n |
Simple_repeat |
| scaffold1409 |
80143 |
80180 |
+ |
(TAATAAT)n |
Simple_repeat |
| scaffold1409 |
80197 |
80467 |
- |
RS1056 |
Unspecified |
| scaffold1409 |
81599 |
81646 |
+ |
(TTA)n |
Simple_repeat |
| scaffold1409 |
82292 |
82330 |
+ |
(T)n |
Simple_repeat |
| scaffold1409 |
82376 |
82487 |
+ |
RS1 |
Unspecified |
| scaffold1409 |
82989 |
83134 |
+ |
(TTTGAAT)n |
Simple_repeat |
| scaffold1409 |
83242 |
83277 |
+ |
(GTT)n |
Simple_repeat |
| scaffold1409 |
85504 |
85894 |
+ |
RS13578 |
Unspecified |
| scaffold1409 |
88685 |
88834 |
+ |
RS17831 |
Unspecified |
| scaffold1409 |
89027 |
89195 |
- |
RS275 |
Unspecified |
| scaffold1409 |
90072 |
90109 |
+ |
(AATAATG)n |
Simple_repeat |
| scaffold1409 |
90314 |
90361 |
+ |
A-rich |
Low_complexity |
| scaffold1409 |
90498 |
90514 |
+ |
(T)n |
Simple_repeat |
| scaffold1409 |
90738 |
90910 |
+ |
RS275 |
Unspecified |
| scaffold1409 |
91057 |
91218 |
+ |
RS17417 |
Unspecified |
| scaffold1409 |
91123 |
91251 |
- |
RS5278 |
Unspecified |
| scaffold1409 |
91231 |
91340 |
+ |
RS17255 |
Unspecified |
| scaffold1409 |
93402 |
93657 |
+ |
RS14355 |
Unspecified |
| scaffold1409 |
93663 |
93697 |
+ |
A-rich |
Low_complexity |
| scaffold1409 |
93766 |
93784 |
+ |
(A)n |
Simple_repeat |
| scaffold1409 |
93850 |
93883 |
+ |
(GTT)n |
Simple_repeat |
| scaffold1409 |
93884 |
94108 |
- |
RS549 |
Unspecified |
| scaffold1409 |
94339 |
94729 |
+ |
RS13578 |
Unspecified |
| scaffold1409 |
95479 |
95608 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold1409 |
95716 |
95740 |
+ |
(A)n |
Simple_repeat |
| scaffold1409 |
96204 |
96239 |
+ |
(AAATTCA)n |
Simple_repeat |
| scaffold1409 |
96973 |
97081 |
- |
RS5278 |
Unspecified |
| scaffold1409 |
97102 |
97394 |
+ |
PL9 |
Unspecified |
| scaffold1409 |
99625 |
99681 |
+ |
A-rich |
Low_complexity |
| scaffold1409 |
100185 |
100294 |
- |
Gypsy-29_PTr-LTR |
LTR/Gypsy |
| scaffold1409 |
100638 |
100932 |
- |
RS465 |
Unspecified |
| scaffold1409 |
101271 |
101348 |
- |
RS10722 |
Unspecified |
| scaffold1409 |
101296 |
101458 |
+ |
RS3682 |
Unspecified |
| scaffold1409 |
101384 |
101524 |
+ |
RS3682 |
Unspecified |
| scaffold1409 |
101472 |
101775 |
+ |
RS3682 |
Unspecified |
| scaffold1409 |
101903 |
102401 |
- |
RS1047 |
Unspecified |
| scaffold1409 |
102337 |
102808 |
+ |
RS1385 |
Unspecified |
| scaffold1409 |
103423 |
103495 |
+ |
(TTTTCA)n |
Simple_repeat |
| scaffold1409 |
104071 |
104103 |
+ |
(T)n |
Simple_repeat |
| scaffold1409 |
104247 |
104405 |
- |
RS1696 |
Unspecified |
| scaffold1409 |
104455 |
104508 |
+ |
A-rich |
Low_complexity |
| scaffold1409 |
104837 |
104853 |
+ |
(T)n |
Simple_repeat |
| scaffold1409 |
104916 |
105032 |
- |
RS935 |
Unspecified |
| scaffold1409 |
105032 |
105134 |
+ |
PL627 |
Unspecified |
| scaffold1409 |
105724 |
105970 |
+ |
PL627 |
Unspecified |
| scaffold1409 |
106233 |
106903 |
- |
RS121 |
Unspecified |
| scaffold1409 |
106528 |
107179 |
- |
RS2911 |
Unspecified |
| scaffold1409 |
106908 |
107384 |
- |
RS247 |
Unspecified |
| scaffold1409 |
107007 |
107479 |
- |
RS247 |
Unspecified |
| scaffold1409 |
107072 |
107543 |
- |
RS247 |
Unspecified |