scaffold1490 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold1490 |
15 |
550 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold1490 |
938 |
1413 |
- |
RS10439 |
Unspecified |
| scaffold1490 |
1414 |
2250 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold1490 |
1415 |
1690 |
- |
Copia-70_VV-I |
LTR/Copia |
| scaffold1490 |
2020 |
2232 |
- |
Copia-70_VV-I |
LTR/Copia |
| scaffold1490 |
3225 |
3280 |
+ |
(TGA)n |
Simple_repeat |
| scaffold1490 |
3306 |
3528 |
- |
RS4314 |
Unspecified |
| scaffold1490 |
4009 |
4030 |
+ |
(T)n |
Simple_repeat |
| scaffold1490 |
6566 |
7062 |
+ |
RS11835 |
Unspecified |
| scaffold1490 |
7122 |
7172 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold1490 |
7400 |
7893 |
+ |
RS11835 |
Unspecified |
| scaffold1490 |
7922 |
8100 |
- |
RS4397 |
Unspecified |
| scaffold1490 |
7977 |
8180 |
+ |
RS14588 |
Unspecified |
| scaffold1490 |
8097 |
8242 |
+ |
RS15015 |
Unspecified |
| scaffold1490 |
8274 |
8539 |
+ |
RS14588 |
Unspecified |
| scaffold1490 |
8317 |
8655 |
+ |
RS15015 |
Unspecified |
| scaffold1490 |
9048 |
9282 |
+ |
RS17170 |
Unspecified |
| scaffold1490 |
9315 |
9450 |
+ |
RS15256 |
Unspecified |
| scaffold1490 |
9579 |
9789 |
+ |
RS15903 |
Unspecified |
| scaffold1490 |
9807 |
9942 |
+ |
RS17931 |
Unspecified |
| scaffold1490 |
10978 |
11018 |
+ |
(AGACAA)n |
Simple_repeat |
| scaffold1490 |
12027 |
12081 |
+ |
(T)n |
Simple_repeat |
| scaffold1490 |
12385 |
12490 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1490 |
12711 |
12769 |
+ |
(CCTCA)n |
Simple_repeat |
| scaffold1490 |
12965 |
13002 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold1490 |
13187 |
13224 |
+ |
(TTC)n |
Simple_repeat |
| scaffold1490 |
13661 |
13706 |
+ |
A-rich |
Low_complexity |
| scaffold1490 |
17717 |
17786 |
+ |
(A)n |
Simple_repeat |
| scaffold1490 |
20973 |
21311 |
+ |
L1-15_Mad |
LINE/L1 |
| scaffold1490 |
21367 |
21425 |
+ |
L1-8_Mad |
LINE/L1 |
| scaffold1490 |
21703 |
21813 |
+ |
RS14155 |
Unspecified |
| scaffold1490 |
22069 |
22417 |
- |
RS11470 |
Unspecified |
| scaffold1490 |
22993 |
23057 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold1490 |
23081 |
23355 |
- |
RS11470 |
Unspecified |
| scaffold1490 |
23572 |
23678 |
- |
RS11406 |
Unspecified |
| scaffold1490 |
23882 |
24048 |
- |
RS3776 |
Unspecified |
| scaffold1490 |
24126 |
24176 |
+ |
A-rich |
Low_complexity |
| scaffold1490 |
24438 |
24585 |
+ |
RS7613 |
Unspecified |
| scaffold1490 |
24589 |
24686 |
+ |
RS12282 |
Unspecified |
| scaffold1490 |
25552 |
25883 |
- |
PL851 |
Unspecified |
| scaffold1490 |
26620 |
26669 |
+ |
(TAATATT)n |
Simple_repeat |
| scaffold1490 |
27934 |
27983 |
+ |
A-rich |
Low_complexity |
| scaffold1490 |
28514 |
28875 |
- |
RS548 |
Unspecified |
| scaffold1490 |
28728 |
28897 |
- |
RS4670 |
Unspecified |
| scaffold1490 |
29531 |
29548 |
+ |
(TG)n |
Simple_repeat |
| scaffold1490 |
30881 |
31134 |
- |
PL330 |
Unspecified |
| scaffold1490 |
31836 |
31861 |
+ |
(TAA)n |
Simple_repeat |
| scaffold1490 |
31888 |
32063 |
+ |
RS8732 |
Unspecified |
| scaffold1490 |
33354 |
33696 |
- |
PL447 |
Unspecified |
| scaffold1490 |
33724 |
33772 |
+ |
RS1619 |
Unspecified |
| scaffold1490 |
33785 |
34787 |
- |
ATCopia28_I-int |
LTR/Copia |
| scaffold1490 |
34811 |
35066 |
+ |
RS4647 |
Unspecified |
| scaffold1490 |
35365 |
35391 |
+ |
(TACA)n |
Simple_repeat |
| scaffold1490 |
36473 |
36650 |
+ |
RS6622 |
Unspecified |
| scaffold1490 |
36824 |
37345 |
+ |
RS1099 |
Unspecified |
| scaffold1490 |
37370 |
37457 |
+ |
RS1099 |
Unspecified |
| scaffold1490 |
37488 |
37514 |
+ |
(TACA)n |
Simple_repeat |
| scaffold1490 |
37999 |
38586 |
- |
RS1250 |
Unspecified |
| scaffold1490 |
38739 |
38807 |
- |
SZ-17_I-int |
LTR/Copia |
| scaffold1490 |
39341 |
39379 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold1490 |
39520 |
39560 |
+ |
(T)n |
Simple_repeat |
| scaffold1490 |
42183 |
42232 |
+ |
(T)n |
Simple_repeat |
| scaffold1490 |
42949 |
43008 |
+ |
RTE-1_TD |
LINE/RTE-BovB |
| scaffold1490 |
44728 |
44752 |
+ |
(T)n |
Simple_repeat |
| scaffold1490 |
48348 |
48438 |
+ |
(T)n |
Simple_repeat |
| scaffold1490 |
50786 |
50843 |
+ |
(ATTTGTA)n |
Simple_repeat |
| scaffold1490 |
51083 |
51122 |
+ |
(TTTTAAT)n |
Simple_repeat |
| scaffold1490 |
51746 |
52008 |
+ |
RS3159 |
Unspecified |
| scaffold1490 |
51806 |
52072 |
+ |
RS10292 |
Unspecified |
| scaffold1490 |
52092 |
52121 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold1490 |
52354 |
52570 |
- |
RS3171 |
Unspecified |
| scaffold1490 |
52825 |
52873 |
+ |
(T)n |
Simple_repeat |
| scaffold1490 |
54199 |
54241 |
- |
ATLINE1_8 |
LINE/L1 |
| scaffold1490 |
54306 |
54557 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold1490 |
54310 |
54456 |
- |
L1-1_PTr |
LINE/L1 |
| scaffold1490 |
54595 |
54798 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold1490 |
54599 |
54666 |
- |
L1-1_PTr |
LINE/L1 |
| scaffold1490 |
54836 |
55327 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold1490 |
54840 |
54907 |
- |
L1-1_PTr |
LINE/L1 |
| scaffold1490 |
55184 |
55234 |
- |
SHALINE16_MT |
LINE/L1 |
| scaffold1490 |
55266 |
55958 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold1490 |
55652 |
55736 |
- |
ATLINE1_12 |
LINE/L1 |
| scaffold1490 |
56164 |
56254 |
- |
ATLINEIII |
LINE/L1 |
| scaffold1490 |
56922 |
57139 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold1490 |
58707 |
58737 |
+ |
(TTGT)n |
Simple_repeat |
| scaffold1490 |
59293 |
59360 |
+ |
A-rich |
Low_complexity |
| scaffold1490 |
60917 |
60945 |
+ |
(CAAT)n |
Simple_repeat |
| scaffold1490 |
60981 |
61663 |
+ |
RS1005 |
Unspecified |
| scaffold1490 |
62620 |
63070 |
+ |
RS12988 |
Unspecified |
| scaffold1490 |
62751 |
63555 |
+ |
RS817 |
Unspecified |
| scaffold1490 |
64008 |
65154 |
- |
RS434 |
Unspecified |
| scaffold1490 |
65153 |
65358 |
+ |
RS28 |
Unspecified |
| scaffold1490 |
66410 |
66480 |
+ |
Gypsy-26_ST-I |
LTR/Gypsy |
| scaffold1490 |
67181 |
67243 |
+ |
A-rich |
Low_complexity |
| scaffold1490 |
67489 |
67524 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold1490 |
67792 |
67827 |
+ |
A-rich |
Low_complexity |
| scaffold1490 |
69827 |
69880 |
+ |
(CTTTT)n |
Simple_repeat |
| scaffold1490 |
70006 |
70048 |
+ |
(ATAATTT)n |
Simple_repeat |
| scaffold1490 |
70772 |
71156 |
- |
PL255 |
Unspecified |
| scaffold1490 |
132571 |
132755 |
- |
Gypsy-72_GM-I |
LTR/Gypsy |