scaffold15200 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold15200 |
410 |
429 |
+ |
(CAC)n |
Simple_repeat |
| scaffold15200 |
2035 |
2084 |
+ |
(GTG)n |
Simple_repeat |
| scaffold15200 |
3167 |
3222 |
+ |
(TAT)n |
Simple_repeat |
| scaffold15200 |
3302 |
3628 |
+ |
RS2784 |
Unspecified |
| scaffold15200 |
3629 |
3845 |
+ |
RS9928 |
Unspecified |
| scaffold15200 |
4341 |
4370 |
+ |
(A)n |
Simple_repeat |
| scaffold15200 |
4571 |
4639 |
+ |
(ACC)n |
Simple_repeat |
| scaffold15200 |
4727 |
4885 |
+ |
(GCG)n |
Simple_repeat |
| scaffold15200 |
4894 |
4927 |
+ |
(ATTTGA)n |
Simple_repeat |
| scaffold15200 |
5245 |
5272 |
+ |
(GTT)n |
Simple_repeat |
| scaffold15200 |
5372 |
5435 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold15200 |
8048 |
8077 |
+ |
(A)n |
Simple_repeat |
| scaffold15200 |
8473 |
8491 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
9845 |
9946 |
+ |
RS14634 |
Unspecified |
| scaffold15200 |
10058 |
10120 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold15200 |
10787 |
10844 |
+ |
(ATGTTG)n |
Simple_repeat |
| scaffold15200 |
11093 |
11198 |
+ |
RS14961 |
Unspecified |
| scaffold15200 |
11666 |
11716 |
+ |
PL375 |
Unspecified |
| scaffold15200 |
11673 |
11734 |
+ |
RS1796 |
Unspecified |
| scaffold15200 |
11887 |
11920 |
+ |
(AATT)n |
Simple_repeat |
| scaffold15200 |
11949 |
11964 |
+ |
(TTTATTT)n |
Simple_repeat |
| scaffold15200 |
11965 |
12048 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold15200 |
12049 |
12059 |
+ |
(TTTATTT)n |
Simple_repeat |
| scaffold15200 |
12065 |
12158 |
+ |
(GGC)n |
Simple_repeat |
| scaffold15200 |
12172 |
12202 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
12226 |
12427 |
+ |
(GGT)n |
Simple_repeat |
| scaffold15200 |
12433 |
12477 |
+ |
GA-rich |
Low_complexity |
| scaffold15200 |
12433 |
12581 |
+ |
GA-rich |
Low_complexity |
| scaffold15200 |
12455 |
12581 |
+ |
RS144 |
Unspecified |
| scaffold15200 |
13154 |
13200 |
+ |
(TGA)n |
Simple_repeat |
| scaffold15200 |
13203 |
13242 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
13412 |
13437 |
+ |
(AAGAG)n |
Simple_repeat |
| scaffold15200 |
13760 |
13801 |
+ |
(CGC)n |
Simple_repeat |
| scaffold15200 |
14066 |
14132 |
+ |
(TTTTTG)n |
Simple_repeat |
| scaffold15200 |
14273 |
14292 |
+ |
(GT)n |
Simple_repeat |
| scaffold15200 |
14596 |
14814 |
+ |
RS16262 |
Unspecified |
| scaffold15200 |
14886 |
15201 |
+ |
RS15125 |
Unspecified |
| scaffold15200 |
15659 |
15764 |
+ |
RS14961 |
Unspecified |
| scaffold15200 |
16503 |
16544 |
+ |
(CGC)n |
Simple_repeat |
| scaffold15200 |
17337 |
17555 |
+ |
RS16262 |
Unspecified |
| scaffold15200 |
17627 |
17942 |
+ |
RS15125 |
Unspecified |
| scaffold15200 |
20112 |
20194 |
- |
RS4 |
Unspecified |
| scaffold15200 |
20443 |
20478 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
20641 |
20668 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
21055 |
21095 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
21296 |
21340 |
+ |
(ATATAAT)n |
Simple_repeat |
| scaffold15200 |
22261 |
22385 |
+ |
RS15956 |
Unspecified |
| scaffold15200 |
22390 |
22537 |
+ |
RS191 |
Unspecified |
| scaffold15200 |
22579 |
22617 |
+ |
(ACC)n |
Simple_repeat |
| scaffold15200 |
22618 |
22634 |
+ |
(TTC)n |
Simple_repeat |
| scaffold15200 |
22685 |
22732 |
+ |
(ACA)n |
Simple_repeat |
| scaffold15200 |
23416 |
23694 |
- |
RS10627 |
Unspecified |
| scaffold15200 |
23474 |
23876 |
- |
RS3365 |
Unspecified |
| scaffold15200 |
23920 |
24047 |
- |
RS9222 |
Unspecified |
| scaffold15200 |
24051 |
24173 |
- |
PL385 |
Unspecified |
| scaffold15200 |
24172 |
24260 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
24360 |
24392 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
24456 |
24626 |
+ |
PL385 |
Unspecified |
| scaffold15200 |
24677 |
24801 |
+ |
RS15956 |
Unspecified |
| scaffold15200 |
24806 |
24953 |
+ |
RS191 |
Unspecified |
| scaffold15200 |
24995 |
25033 |
+ |
(ACC)n |
Simple_repeat |
| scaffold15200 |
25034 |
25050 |
+ |
(TTC)n |
Simple_repeat |
| scaffold15200 |
25101 |
25148 |
+ |
(ACA)n |
Simple_repeat |
| scaffold15200 |
25832 |
26110 |
- |
RS10627 |
Unspecified |
| scaffold15200 |
25890 |
26292 |
- |
RS3365 |
Unspecified |
| scaffold15200 |
29142 |
29158 |
+ |
(TCG)n |
Simple_repeat |
| scaffold15200 |
29229 |
29263 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
29467 |
29509 |
+ |
(ATTTG)n |
Simple_repeat |
| scaffold15200 |
31106 |
31151 |
+ |
(TTCT)n |
Simple_repeat |
| scaffold15200 |
31206 |
31261 |
+ |
RS16570 |
Unspecified |
| scaffold15200 |
31496 |
31583 |
+ |
Helitron-4N1_SMo |
RC/Helitron |
| scaffold15200 |
38192 |
38225 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
38471 |
38684 |
- |
RS22 |
Unspecified |
| scaffold15200 |
39390 |
39413 |
+ |
(GTA)n |
Simple_repeat |
| scaffold15200 |
39803 |
39824 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
41074 |
41314 |
- |
RS16888 |
Unspecified |
| scaffold15200 |
42016 |
42034 |
+ |
(A)n |
Simple_repeat |
| scaffold15200 |
42162 |
42187 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
42522 |
42546 |
+ |
(AAT)n |
Simple_repeat |
| scaffold15200 |
45404 |
45494 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold15200 |
45716 |
45760 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold15200 |
45900 |
45971 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
46176 |
46210 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
46332 |
46342 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold15200 |
46343 |
46406 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold15200 |
47598 |
47623 |
+ |
(A)n |
Simple_repeat |
| scaffold15200 |
48802 |
48827 |
+ |
(A)n |
Simple_repeat |
| scaffold15200 |
49276 |
49311 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
50360 |
50475 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
50976 |
51069 |
- |
RS16382 |
Unspecified |
| scaffold15200 |
51610 |
51642 |
+ |
(AATAT)n |
Simple_repeat |
| scaffold15200 |
51660 |
52017 |
+ |
RS283 |
Unspecified |
| scaffold15200 |
52019 |
52281 |
- |
RS356 |
Unspecified |
| scaffold15200 |
52280 |
52375 |
+ |
RS283 |
Unspecified |
| scaffold15200 |
52604 |
52730 |
- |
RS445 |
Unspecified |
| scaffold15200 |
52810 |
52839 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
52937 |
52968 |
+ |
(CTCTT)n |
Simple_repeat |
| scaffold15200 |
54609 |
54625 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
54993 |
55063 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
54998 |
55055 |
+ |
GA-rich |
Low_complexity |
| scaffold15200 |
55198 |
55245 |
+ |
GA-rich |
Low_complexity |
| scaffold15200 |
55419 |
55442 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
55511 |
55552 |
+ |
(GAGGGAAGGG)n |
Simple_repeat |
| scaffold15200 |
55714 |
55744 |
+ |
(TTCCC)n |
Simple_repeat |
| scaffold15200 |
55763 |
55807 |
+ |
G-rich |
Low_complexity |
| scaffold15200 |
56264 |
56549 |
- |
RS888 |
Unspecified |
| scaffold15200 |
56963 |
56994 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
57851 |
57886 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
58066 |
58195 |
+ |
MtPH-A6-2-Ia |
DNA/PIF-Harbinger |
| scaffold15200 |
58247 |
58318 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold15200 |
59079 |
59115 |
+ |
(A)n |
Simple_repeat |
| scaffold15200 |
59597 |
59667 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
59602 |
59659 |
+ |
GA-rich |
Low_complexity |
| scaffold15200 |
59802 |
59849 |
+ |
GA-rich |
Low_complexity |
| scaffold15200 |
60023 |
60046 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
60305 |
60579 |
- |
RS888 |
Unspecified |
| scaffold15200 |
61663 |
61846 |
+ |
RS12195 |
Unspecified |
| scaffold15200 |
61859 |
62226 |
+ |
RS2938 |
Unspecified |
| scaffold15200 |
62278 |
62371 |
- |
PL464 |
Unspecified |
| scaffold15200 |
62412 |
62515 |
- |
RS250 |
Unspecified |
| scaffold15200 |
63491 |
63512 |
+ |
(A)n |
Simple_repeat |
| scaffold15200 |
63855 |
63909 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold15200 |
64035 |
64051 |
+ |
(A)n |
Simple_repeat |
| scaffold15200 |
64110 |
64169 |
+ |
RS6841 |
Unspecified |
| scaffold15200 |
64178 |
64218 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
64577 |
64689 |
+ |
RS16824 |
Unspecified |
| scaffold15200 |
64899 |
64973 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
65780 |
65799 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
66108 |
66155 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15200 |
66307 |
66370 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
66376 |
66419 |
+ |
(AATGA)n |
Simple_repeat |
| scaffold15200 |
67081 |
67170 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold15200 |
67795 |
67915 |
+ |
RS17896 |
Unspecified |
| scaffold15200 |
68565 |
68654 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold15200 |
69279 |
69399 |
+ |
RS17896 |
Unspecified |
| scaffold15200 |
69727 |
69765 |
+ |
(AATCCAA)n |
Simple_repeat |
| scaffold15200 |
69979 |
70321 |
- |
RS8 |
Unspecified |
| scaffold15200 |
71064 |
71091 |
+ |
(TAC)n |
Simple_repeat |
| scaffold15200 |
73732 |
73821 |
- |
RS1277 |
Unspecified |
| scaffold15200 |
73971 |
74013 |
+ |
(AAAAAC)n |
Simple_repeat |
| scaffold15200 |
74100 |
74220 |
+ |
RS3558 |
Unspecified |
| scaffold15200 |
74228 |
74320 |
- |
RS1035 |
Unspecified |
| scaffold15200 |
74357 |
74395 |
+ |
RS11863 |
Unspecified |
| scaffold15200 |
74368 |
74516 |
- |
RS1095 |
Unspecified |
| scaffold15200 |
74781 |
74804 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
74890 |
74921 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15200 |
75430 |
75469 |
+ |
(TCTA)n |
Simple_repeat |
| scaffold15200 |
75468 |
75518 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
75531 |
75587 |
+ |
GA-rich |
Low_complexity |
| scaffold15200 |
77331 |
77377 |
- |
RS6320 |
Unspecified |
| scaffold15200 |
77336 |
77385 |
+ |
RS13134 |
Unspecified |
| scaffold15200 |
78369 |
78390 |
+ |
(GTAT)n |
Simple_repeat |
| scaffold15200 |
79035 |
79078 |
+ |
PL517 |
Unspecified |
| scaffold15200 |
79052 |
79104 |
+ |
PL517 |
Unspecified |
| scaffold15200 |
79830 |
79897 |
- |
RS133 |
Unspecified |
| scaffold15200 |
80601 |
80622 |
+ |
(CCA)n |
Simple_repeat |
| scaffold15200 |
80676 |
80711 |
+ |
(ATTACC)n |
Simple_repeat |
| scaffold15200 |
81353 |
81382 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15200 |
81452 |
81706 |
+ |
RS17600 |
Unspecified |
| scaffold15200 |
85025 |
85070 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
85291 |
85380 |
- |
RS1 |
Unspecified |
| scaffold15200 |
86677 |
86744 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold15200 |
89889 |
89991 |
+ |
RS16235 |
Unspecified |
| scaffold15200 |
94858 |
94886 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
94953 |
94989 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold15200 |
95485 |
95516 |
+ |
GA-rich |
Low_complexity |
| scaffold15200 |
98739 |
98787 |
+ |
G-rich |
Low_complexity |
| scaffold15200 |
99062 |
99102 |
+ |
(TGTT)n |
Simple_repeat |
| scaffold15200 |
99203 |
99297 |
- |
RS17105 |
Unspecified |
| scaffold15200 |
99223 |
99359 |
+ |
RS13085 |
Unspecified |
| scaffold15200 |
99509 |
99672 |
+ |
RS17789 |
Unspecified |
| scaffold15200 |
99708 |
99827 |
+ |
RS7495 |
Unspecified |
| scaffold15200 |
99829 |
100076 |
+ |
RS16477 |
Unspecified |
| scaffold15200 |
100443 |
100491 |
+ |
G-rich |
Low_complexity |
| scaffold15200 |
100766 |
100806 |
+ |
(TGTT)n |
Simple_repeat |
| scaffold15200 |
100952 |
101099 |
+ |
(AGCTG)n |
Simple_repeat |
| scaffold15200 |
101243 |
101406 |
+ |
RS17789 |
Unspecified |
| scaffold15200 |
101442 |
101561 |
+ |
RS7495 |
Unspecified |
| scaffold15200 |
101563 |
101810 |
+ |
RS16477 |
Unspecified |
| scaffold15200 |
101732 |
101916 |
- |
RS1403 |
Unspecified |
| scaffold15200 |
102774 |
102813 |
+ |
(ATAATGA)n |
Simple_repeat |
| scaffold15200 |
102849 |
102982 |
+ |
RS250 |
Unspecified |
| scaffold15200 |
104072 |
104132 |
+ |
(TTCATC)n |
Simple_repeat |
| scaffold15200 |
104248 |
104284 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold15200 |
104936 |
104981 |
+ |
(ATGTATG)n |
Simple_repeat |
| scaffold15200 |
105320 |
105785 |
+ |
RS17891 |
Unspecified |
| scaffold15200 |
105620 |
105815 |
- |
RS18111 |
Unspecified |
| scaffold15200 |
106200 |
106481 |
- |
RS586 |
Unspecified |
| scaffold15200 |
106480 |
106513 |
+ |
RS1814 |
Unspecified |
| scaffold15200 |
107555 |
108242 |
+ |
RS425 |
Unspecified |
| scaffold15200 |
107855 |
108294 |
- |
RS446 |
Unspecified |
| scaffold15200 |
108751 |
108998 |
- |
RS10 |
Unspecified |
| scaffold15200 |
109055 |
109099 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
109492 |
109533 |
+ |
(GAATT)n |
Simple_repeat |
| scaffold15200 |
109870 |
109921 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold15200 |
110802 |
110899 |
+ |
(TTG)n |
Simple_repeat |
| scaffold15200 |
110931 |
111014 |
- |
PL105 |
Unspecified |
| scaffold15200 |
111119 |
111243 |
+ |
Copia-2_SL-LTR |
LTR/Copia |
| scaffold15200 |
111271 |
111332 |
+ |
(TAT)n |
Simple_repeat |
| scaffold15200 |
112912 |
112954 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
113067 |
113262 |
- |
RS1829 |
Unspecified |
| scaffold15200 |
114030 |
114082 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
114122 |
114152 |
+ |
(T)n |
Simple_repeat |
| scaffold15200 |
114164 |
114185 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold15200 |
114568 |
114604 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold15200 |
121746 |
121768 |
+ |
(GAGC)n |
Simple_repeat |
| scaffold15200 |
122458 |
122477 |
+ |
(A)n |
Simple_repeat |
| scaffold15200 |
125844 |
125885 |
+ |
PL2 |
Unspecified |
| scaffold15200 |
128124 |
128168 |
+ |
(AACAGC)n |
Simple_repeat |
| scaffold15200 |
128918 |
129056 |
+ |
RS7198 |
Unspecified |
| scaffold15200 |
131077 |
131105 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
131904 |
131956 |
+ |
(AACG)n |
Simple_repeat |
| scaffold15200 |
131957 |
131981 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
132121 |
132147 |
+ |
(AATTG)n |
Simple_repeat |
| scaffold15200 |
132401 |
132501 |
+ |
RS4475 |
Unspecified |
| scaffold15200 |
132422 |
132527 |
+ |
RS10491 |
Unspecified |
| scaffold15200 |
133879 |
133927 |
+ |
A-rich |
Low_complexity |
| scaffold15200 |
134424 |
134455 |
+ |
(AACCA)n |
Simple_repeat |
| scaffold15200 |
134784 |
134811 |
+ |
(TTG)n |
Simple_repeat |
| scaffold15200 |
134849 |
134933 |
+ |
(CAC)n |
Simple_repeat |
| scaffold15200 |
139041 |
139175 |
+ |
RS11852 |
Unspecified |