scaffold15400 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold15400 |
3 |
109 |
+ |
RS4408 |
Unspecified |
| scaffold15400 |
108 |
1592 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold15400 |
109 |
1485 |
- |
Copia-2_GM-I |
LTR/Copia |
| scaffold15400 |
1625 |
1705 |
- |
Copia-2_GM-I |
LTR/Copia |
| scaffold15400 |
1714 |
3240 |
- |
Copia-2_GM-I |
LTR/Copia |
| scaffold15400 |
3241 |
5349 |
- |
Copia-2_GM-I |
LTR/Copia |
| scaffold15400 |
6022 |
6241 |
+ |
RS12990 |
Unspecified |
| scaffold15400 |
7174 |
7320 |
- |
RS1131 |
Unspecified |
| scaffold15400 |
7355 |
7615 |
- |
RS6590 |
Unspecified |
| scaffold15400 |
7874 |
7962 |
+ |
A-rich |
Low_complexity |
| scaffold15400 |
8037 |
8249 |
- |
RS5668 |
Unspecified |
| scaffold15400 |
8352 |
8464 |
- |
RS14468 |
Unspecified |
| scaffold15400 |
8465 |
8619 |
- |
RS5083 |
Unspecified |
| scaffold15400 |
8497 |
8734 |
- |
RS8016 |
Unspecified |
| scaffold15400 |
10085 |
10134 |
+ |
A-rich |
Low_complexity |
| scaffold15400 |
10380 |
10409 |
+ |
G-rich |
Low_complexity |
| scaffold15400 |
11338 |
11403 |
+ |
RS1323 |
Unspecified |
| scaffold15400 |
11425 |
11623 |
- |
PL729 |
Unspecified |
| scaffold15400 |
11622 |
11689 |
+ |
(ATT)n |
Simple_repeat |
| scaffold15400 |
11622 |
11786 |
+ |
(ATT)n |
Simple_repeat |
| scaffold15400 |
11671 |
11786 |
- |
PL729 |
Unspecified |
| scaffold15400 |
11687 |
12004 |
+ |
RS1323 |
Unspecified |
| scaffold15400 |
12019 |
12335 |
- |
RS1649 |
Unspecified |
| scaffold15400 |
12611 |
12650 |
+ |
A-rich |
Low_complexity |
| scaffold15400 |
12779 |
12802 |
+ |
(T)n |
Simple_repeat |
| scaffold15400 |
12931 |
12961 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold15400 |
12979 |
13234 |
+ |
RS1 |
Unspecified |
| scaffold15400 |
13233 |
13358 |
+ |
A-rich |
Low_complexity |
| scaffold15400 |
13416 |
13612 |
+ |
RS72 |
Unspecified |
| scaffold15400 |
13853 |
13895 |
+ |
(GTGGTT)n |
Simple_repeat |
| scaffold15400 |
14543 |
14682 |
+ |
RS17247 |
Unspecified |
| scaffold15400 |
17535 |
17562 |
+ |
(T)n |
Simple_repeat |
| scaffold15400 |
18620 |
18642 |
+ |
(T)n |
Simple_repeat |
| scaffold15400 |
18654 |
18757 |
- |
RS233 |
Unspecified |
| scaffold15400 |
18761 |
18811 |
- |
RS16998 |
Unspecified |
| scaffold15400 |
19058 |
19105 |
+ |
(ATTATAA)n |
Simple_repeat |
| scaffold15400 |
19135 |
19354 |
+ |
RS1485 |
Unspecified |
| scaffold15400 |
20165 |
20263 |
+ |
RS16888 |
Unspecified |
| scaffold15400 |
20255 |
20404 |
- |
PL753 |
Unspecified |
| scaffold15400 |
20402 |
20763 |
+ |
ENSPM_MT |
DNA/CMC-EnSpm |
| scaffold15400 |
22152 |
22226 |
+ |
(GAT)n |
Simple_repeat |
| scaffold15400 |
22227 |
22291 |
+ |
(GAA)n |
Simple_repeat |
| scaffold15400 |
22292 |
22338 |
+ |
(GAT)n |
Simple_repeat |
| scaffold15400 |
22436 |
22496 |
+ |
(TGTTT)n |
Simple_repeat |
| scaffold15400 |
22581 |
23074 |
- |
RS1765 |
Unspecified |
| scaffold15400 |
23060 |
23282 |
- |
PL446 |
Unspecified |
| scaffold15400 |
23284 |
23712 |
+ |
RS23 |
Unspecified |
| scaffold15400 |
23284 |
23643 |
- |
RS8560 |
Unspecified |
| scaffold15400 |
23284 |
23600 |
- |
PL791 |
Unspecified |
| scaffold15400 |
24896 |
24944 |
+ |
A-rich |
Low_complexity |
| scaffold15400 |
25682 |
26129 |
+ |
PL104 |
Unspecified |
| scaffold15400 |
26127 |
26318 |
- |
RS1765 |
Unspecified |
| scaffold15400 |
26149 |
26335 |
- |
RS3878 |
Unspecified |
| scaffold15400 |
26340 |
26450 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15400 |
26578 |
26702 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15400 |
27167 |
27770 |
+ |
RS1145 |
Unspecified |
| scaffold15400 |
27805 |
28732 |
+ |
ENSPM2_MT |
DNA/CMC-EnSpm |
| scaffold15400 |
28781 |
29416 |
+ |
cacta |
cacta(TransposonPSI) |
| scaffold15400 |
28850 |
29351 |
+ |
ENSPM2_MT |
DNA/CMC-EnSpm |
| scaffold15400 |
30789 |
30810 |
+ |
(T)n |
Simple_repeat |
| scaffold15400 |
30833 |
32483 |
- |
Gypsy-133_GM-I |
LTR/Gypsy |
| scaffold15400 |
32516 |
32925 |
- |
Ogre-VP1_I-int |
LTR/Gypsy |
| scaffold15400 |
33413 |
35039 |
- |
Gypsy-133_GM-I |
LTR/Gypsy |
| scaffold15400 |
35081 |
36256 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold15400 |
35113 |
36210 |
- |
Ogre-PT2_I-int |
LTR/Gypsy |
| scaffold15400 |
36414 |
36490 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold15400 |
36735 |
36835 |
+ |
RS2619 |
Unspecified |
| scaffold15400 |
36991 |
37074 |
- |
Gypsy-29_VV-I |
LTR/Gypsy |
| scaffold15400 |
37775 |
37861 |
- |
Gypsy-29_VV-I |
LTR/Gypsy |
| scaffold15400 |
41910 |
42046 |
- |
RS672 |
Unspecified |
| scaffold15400 |
42658 |
42947 |
+ |
RS9134 |
Unspecified |
| scaffold15400 |
42850 |
42966 |
+ |
RS15597 |
Unspecified |
| scaffold15400 |
42976 |
43046 |
+ |
(AG)n |
Simple_repeat |
| scaffold15400 |
43113 |
43581 |
- |
RS894 |
Unspecified |
| scaffold15400 |
43576 |
43654 |
- |
PL289 |
Unspecified |
| scaffold15400 |
47833 |
48411 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold15400 |
48281 |
48399 |
+ |
Copia-53_ST-I |
LTR/Copia |
| scaffold15400 |
49400 |
50285 |
+ |
Copia-53_ST-I |
LTR/Copia |
| scaffold15400 |
50333 |
50584 |
+ |
PL240 |
Unspecified |
| scaffold15400 |
51508 |
51628 |
+ |
PL608 |
Unspecified |
| scaffold15400 |
51636 |
51857 |
+ |
Copia-16_CP-I |
LTR/Copia |
| scaffold15400 |
51903 |
52084 |
- |
RS11996 |
Unspecified |
| scaffold15400 |
52213 |
53772 |
+ |
Copia-16_CP-I |
LTR/Copia |
| scaffold15400 |
53773 |
54067 |
+ |
RS9134 |
Unspecified |
| scaffold15400 |
53965 |
54086 |
+ |
RS15597 |
Unspecified |
| scaffold15400 |
54280 |
54532 |
+ |
RS15440 |
Unspecified |
| scaffold15400 |
55121 |
55198 |
+ |
RS1644 |
Unspecified |
| scaffold15400 |
55252 |
55276 |
+ |
(A)n |
Simple_repeat |
| scaffold15400 |
55536 |
55600 |
+ |
(ATTTAT)n |
Simple_repeat |
| scaffold15400 |
56117 |
56247 |
- |
PL517 |
Unspecified |
| scaffold15400 |
56220 |
56254 |
- |
PL517 |
Unspecified |
| scaffold15400 |
58216 |
58296 |
+ |
(AATATAT)n |
Simple_repeat |
| scaffold15400 |
59079 |
59281 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold15400 |
59534 |
59722 |
+ |
RS15185 |
Unspecified |
| scaffold15400 |
59826 |
59863 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold15400 |
60337 |
60355 |
+ |
(AT)n |
Simple_repeat |
| scaffold15400 |
60678 |
60748 |
+ |
A-rich |
Low_complexity |
| scaffold15400 |
60752 |
60942 |
+ |
PL700 |
Unspecified |
| scaffold15400 |
62590 |
62620 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold15400 |
63534 |
63573 |
+ |
(ATT)n |
Simple_repeat |
| scaffold15400 |
63891 |
63937 |
- |
RS4 |
Unspecified |
| scaffold15400 |
64200 |
64443 |
- |
RS17600 |
Unspecified |
| scaffold15400 |
64613 |
65694 |
- |
RS257 |
Unspecified |
| scaffold15400 |
66382 |
66388 |
+ |
(TTTTCAT)n |
Simple_repeat |
| scaffold15400 |
66389 |
66412 |
+ |
(T)n |
Simple_repeat |
| scaffold15400 |
66426 |
66551 |
- |
RS1402 |
Unspecified |
| scaffold15400 |
67066 |
67826 |
- |
PL265 |
Unspecified |
| scaffold15400 |
67974 |
68045 |
+ |
A-rich |
Low_complexity |
| scaffold15400 |
68217 |
68395 |
+ |
RS8800 |
Unspecified |
| scaffold15400 |
68660 |
69097 |
+ |
RS11653 |
Unspecified |
| scaffold15400 |
69293 |
69578 |
- |
RS3559 |
Unspecified |
| scaffold15400 |
70049 |
70233 |
- |
RS509 |
Unspecified |
| scaffold15400 |
70311 |
70493 |
- |
RS38 |
Unspecified |
| scaffold15400 |
70688 |
70733 |
+ |
(TTA)n |
Simple_repeat |
| scaffold15400 |
70927 |
70957 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold15400 |
71003 |
71272 |
- |
RS68 |
Unspecified |
| scaffold15400 |
72580 |
72748 |
+ |
RS15959 |
Unspecified |
| scaffold15400 |
72808 |
72861 |
+ |
(TTTTTAA)n |
Simple_repeat |
| scaffold15400 |
73282 |
73396 |
+ |
RS18226 |
Unspecified |
| scaffold15400 |
74143 |
74210 |
+ |
(A)n |
Simple_repeat |
| scaffold15400 |
75332 |
75544 |
+ |
RS48 |
Unspecified |
| scaffold15400 |
75897 |
76022 |
+ |
(CATAAT)n |
Simple_repeat |
| scaffold15400 |
76410 |
77552 |
+ |
L1-1_GM |
LINE/L1 |
| scaffold15400 |
78250 |
78289 |
+ |
(ATTGAA)n |
Simple_repeat |
| scaffold15400 |
78409 |
78427 |
+ |
(T)n |
Simple_repeat |
| scaffold15400 |
78544 |
78771 |
- |
RS4 |
Unspecified |
| scaffold15400 |
82054 |
82327 |
+ |
RS748 |
Unspecified |
| scaffold15400 |
82928 |
82988 |
+ |
A-rich |
Low_complexity |
| scaffold15400 |
83529 |
83574 |
+ |
(TA)n |
Simple_repeat |
| scaffold15400 |
83771 |
83959 |
- |
RS49 |
Unspecified |
| scaffold15400 |
86207 |
86466 |
+ |
RS312 |
Unspecified |
| scaffold15400 |
86827 |
87199 |
- |
RS10403 |
Unspecified |
| scaffold15400 |
88401 |
88443 |
+ |
G-rich |
Low_complexity |
| scaffold15400 |
88527 |
88562 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold15400 |
88796 |
91753 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold15400 |
91976 |
92386 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold15400 |
92412 |
93074 |
- |
MEGY-I_MT |
LTR/Gypsy |