scaffold15410 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold15410 |
1520 |
1551 |
+ |
(AATG)n |
Simple_repeat |
| scaffold15410 |
5969 |
6047 |
+ |
(TAATTCT)n |
Simple_repeat |
| scaffold15410 |
6182 |
6223 |
+ |
(ATCCGAA)n |
Simple_repeat |
| scaffold15410 |
6286 |
6333 |
+ |
(TTGGATA)n |
Simple_repeat |
| scaffold15410 |
6640 |
6658 |
+ |
(C)n |
Simple_repeat |
| scaffold15410 |
7171 |
7241 |
+ |
MIUSE1_TM |
LINE/L1 |
| scaffold15410 |
8068 |
8163 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold15410 |
8492 |
8587 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold15410 |
9476 |
9500 |
+ |
(A)n |
Simple_repeat |
| scaffold15410 |
9516 |
9679 |
- |
ATCopia96_I-int |
LTR/Copia |
| scaffold15410 |
11005 |
12156 |
+ |
CAREP1 |
LTR/Gypsy |
| scaffold15410 |
11169 |
11205 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold15410 |
11651 |
11684 |
+ |
(TTCATT)n |
Simple_repeat |
| scaffold15410 |
12389 |
12475 |
+ |
(TATT)n |
Simple_repeat |
| scaffold15410 |
13083 |
13111 |
+ |
(TGGGGG)n |
Simple_repeat |
| scaffold15410 |
18347 |
18391 |
+ |
(CCCT)n |
Simple_repeat |
| scaffold15410 |
19583 |
19662 |
- |
RS11188 |
Unspecified |
| scaffold15410 |
20687 |
20722 |
+ |
(T)n |
Simple_repeat |
| scaffold15410 |
21706 |
21866 |
+ |
GA-rich |
Low_complexity |
| scaffold15410 |
23706 |
23742 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold15410 |
23909 |
24014 |
+ |
ATRAN |
DNA? |
| scaffold15410 |
24388 |
24446 |
+ |
LTR-2_MX-LTR |
LTR |
| scaffold15410 |
27175 |
27211 |
+ |
(A)n |
Simple_repeat |
| scaffold15410 |
27588 |
27665 |
+ |
A-rich |
Low_complexity |
| scaffold15410 |
28770 |
28796 |
+ |
(T)n |
Simple_repeat |
| scaffold15410 |
29098 |
29122 |
+ |
(AT)n |
Simple_repeat |
| scaffold15410 |
29856 |
29902 |
+ |
(A)n |
Simple_repeat |
| scaffold15410 |
30677 |
30725 |
+ |
A-rich |
Low_complexity |
| scaffold15410 |
30790 |
30813 |
+ |
(A)n |
Simple_repeat |
| scaffold15410 |
31160 |
31338 |
- |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold15410 |
31791 |
31819 |
+ |
(TACTAT)n |
Simple_repeat |
| scaffold15410 |
32206 |
32222 |
+ |
(A)n |
Simple_repeat |
| scaffold15410 |
32417 |
32447 |
+ |
A-rich |
Low_complexity |
| scaffold15410 |
32802 |
32873 |
+ |
(CTTTCT)n |
Simple_repeat |
| scaffold15410 |
33804 |
34847 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold15410 |
33952 |
34268 |
- |
MuDR-8_SBi |
DNA/MULE-MuDR |
| scaffold15410 |
34351 |
34541 |
- |
MuDR-7_VV |
DNA/MULE-MuDR |
| scaffold15410 |
34884 |
34922 |
+ |
A-rich |
Low_complexity |
| scaffold15410 |
34930 |
35401 |
- |
MuDR-7_VV |
DNA/MULE-MuDR |
| scaffold15410 |
35823 |
35897 |
- |
MuDR-7_VV |
DNA/MULE-MuDR |
| scaffold15410 |
36899 |
36935 |
+ |
(TAACAA)n |
Simple_repeat |
| scaffold15410 |
37044 |
37100 |
+ |
A-rich |
Low_complexity |
| scaffold15410 |
37984 |
38034 |
+ |
(CTCTC)n |
Simple_repeat |
| scaffold15410 |
48676 |
48695 |
+ |
(A)n |
Simple_repeat |
| scaffold15410 |
49141 |
49184 |
+ |
(A)n |
Simple_repeat |
| scaffold15410 |
50501 |
50539 |
+ |
A-rich |
Low_complexity |
| scaffold15410 |
51497 |
51517 |
+ |
(A)n |
Simple_repeat |
| scaffold15410 |
53799 |
53866 |
+ |
Gypsy-5_EPa-I |
LTR/Gypsy |
| scaffold15410 |
55630 |
55662 |
+ |
(AAT)n |
Simple_repeat |
| scaffold15410 |
55805 |
55964 |
+ |
RS1 |
Unspecified |
| scaffold15410 |
55967 |
56123 |
+ |
RS1 |
Unspecified |
| scaffold15410 |
58352 |
58518 |
- |
ATCOPIN_LTR |
LTR |
| scaffold15410 |
58382 |
58621 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold15410 |
60400 |
60458 |
+ |
A-rich |
Low_complexity |
| scaffold15410 |
60555 |
60605 |
+ |
A-rich |
Low_complexity |
| scaffold15410 |
60641 |
60674 |
+ |
GA-rich |
Low_complexity |
| scaffold15410 |
60693 |
60727 |
+ |
(AGGCAA)n |
Simple_repeat |
| scaffold15410 |
60877 |
60915 |
+ |
(CAATCAT)n |
Simple_repeat |
| scaffold15410 |
61023 |
61086 |
+ |
(GGTGAC)n |
Simple_repeat |
| scaffold15410 |
62589 |
62723 |
+ |
(CCA)n |
Simple_repeat |
| scaffold15410 |
64470 |
64537 |
+ |
(TTGTGA)n |
Simple_repeat |
| scaffold15410 |
65125 |
65160 |
+ |
(A)n |
Simple_repeat |
| scaffold15410 |
65190 |
65226 |
+ |
(A)n |
Simple_repeat |
| scaffold15410 |
66562 |
66684 |
- |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold15410 |
66826 |
66864 |
+ |
(ATCAACA)n |
Simple_repeat |
| scaffold15410 |
66891 |
66917 |
+ |
(CT)n |
Simple_repeat |
| scaffold15410 |
67682 |
67804 |
- |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold15410 |
67946 |
67984 |
+ |
(ATCAACA)n |
Simple_repeat |
| scaffold15410 |
68011 |
68037 |
+ |
(CT)n |
Simple_repeat |
| scaffold15410 |
69593 |
69623 |
+ |
(A)n |
Simple_repeat |
| scaffold15410 |
69972 |
70203 |
+ |
(GTG)n |
Simple_repeat |
| scaffold15410 |
70322 |
70364 |
+ |
(AATC)n |
Simple_repeat |
| scaffold15410 |
70425 |
70480 |
+ |
A-rich |
Low_complexity |