scaffold15864 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold15864 |
16 |
1280 |
+ |
PL475 |
Unspecified |
| scaffold15864 |
2308 |
2693 |
+ |
RS446 |
Unspecified |
| scaffold15864 |
2692 |
3282 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold15864 |
2694 |
3093 |
- |
Copia48-PTR_I-int |
LTR/Copia |
| scaffold15864 |
3103 |
3265 |
- |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold15864 |
3561 |
3589 |
+ |
(T)n |
Simple_repeat |
| scaffold15864 |
4290 |
4310 |
+ |
(A)n |
Simple_repeat |
| scaffold15864 |
4334 |
4547 |
+ |
RS537 |
Unspecified |
| scaffold15864 |
4550 |
4574 |
+ |
(AAT)n |
Simple_repeat |
| scaffold15864 |
4648 |
4667 |
+ |
(AAT)n |
Simple_repeat |
| scaffold15864 |
5519 |
5634 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold15864 |
6960 |
6976 |
+ |
(T)n |
Simple_repeat |
| scaffold15864 |
9015 |
9119 |
- |
RS18078 |
Unspecified |
| scaffold15864 |
9304 |
9477 |
- |
RS233 |
Unspecified |
| scaffold15864 |
9323 |
9484 |
+ |
RS2719 |
Unspecified |
| scaffold15864 |
9499 |
9878 |
- |
RS221 |
Unspecified |
| scaffold15864 |
10487 |
10537 |
+ |
(T)n |
Simple_repeat |
| scaffold15864 |
10742 |
11010 |
+ |
RS10 |
Unspecified |
| scaffold15864 |
11322 |
11396 |
+ |
A-rich |
Low_complexity |
| scaffold15864 |
12066 |
12096 |
+ |
(A)n |
Simple_repeat |
| scaffold15864 |
12356 |
12557 |
- |
RS1233 |
Unspecified |
| scaffold15864 |
12581 |
12776 |
+ |
RS12339 |
Unspecified |
| scaffold15864 |
12795 |
12812 |
+ |
(A)n |
Simple_repeat |
| scaffold15864 |
12859 |
12932 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold15864 |
13089 |
13184 |
+ |
A-rich |
Low_complexity |
| scaffold15864 |
13089 |
13367 |
+ |
A-rich |
Low_complexity |
| scaffold15864 |
13151 |
13367 |
+ |
RS880 |
Unspecified |
| scaffold15864 |
13524 |
13550 |
+ |
(TC)n |
Simple_repeat |
| scaffold15864 |
13775 |
13803 |
+ |
(T)n |
Simple_repeat |
| scaffold15864 |
13880 |
13975 |
+ |
(TGAGGA)n |
Simple_repeat |
| scaffold15864 |
14370 |
14528 |
+ |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold15864 |
14708 |
14744 |
- |
DS-RICE3N |
DNA/hAT-Ac |
| scaffold15864 |
14745 |
14874 |
+ |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold15864 |
14884 |
15085 |
+ |
RS8134 |
Unspecified |
| scaffold15864 |
15527 |
15587 |
+ |
RS8134 |
Unspecified |
| scaffold15864 |
16382 |
16404 |
+ |
(A)n |
Simple_repeat |
| scaffold15864 |
16592 |
16673 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold15864 |
16702 |
16757 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold15864 |
16758 |
16828 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold15864 |
17870 |
17980 |
+ |
RS12449 |
Unspecified |
| scaffold15864 |
18165 |
18604 |
- |
RS283 |
Unspecified |
| scaffold15864 |
19153 |
19273 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold15864 |
19295 |
19350 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold15864 |
19705 |
19734 |
+ |
G-rich |
Low_complexity |
| scaffold15864 |
19772 |
19988 |
- |
RS356 |
Unspecified |
| scaffold15864 |
19987 |
20043 |
- |
RS356 |
Unspecified |
| scaffold15864 |
20173 |
20196 |
+ |
(AATA)n |
Simple_repeat |
| scaffold15864 |
20644 |
20742 |
+ |
(TCTTTC)n |
Simple_repeat |
| scaffold15864 |
22205 |
22254 |
+ |
(CCGGC)n |
Simple_repeat |
| scaffold15864 |
22322 |
22414 |
+ |
(GACCCG)n |
Simple_repeat |
| scaffold15864 |
22417 |
22587 |
+ |
(TATTTA)n |
Simple_repeat |
| scaffold15864 |
22806 |
23147 |
+ |
RS510 |
Unspecified |
| scaffold15864 |
23217 |
23490 |
+ |
RS1 |
Unspecified |
| scaffold15864 |
24039 |
24067 |
+ |
A-rich |
Low_complexity |
| scaffold15864 |
24826 |
24866 |
+ |
G-rich |
Low_complexity |
| scaffold15864 |
25010 |
25084 |
+ |
GA-rich |
Low_complexity |
| scaffold15864 |
25510 |
25648 |
- |
hAT-14N1_ZM |
DNA/hAT-Tip100 |
| scaffold15864 |
25981 |
26227 |
- |
RS594 |
Unspecified |
| scaffold15864 |
26446 |
26548 |
- |
RS5561 |
Unspecified |
| scaffold15864 |
26774 |
26807 |
+ |
A-rich |
Low_complexity |
| scaffold15864 |
27216 |
27357 |
+ |
(TATCCA)n |
Simple_repeat |
| scaffold15864 |
27733 |
27778 |
+ |
GA-rich |
Low_complexity |
| scaffold15864 |
28147 |
28226 |
+ |
(AACTTCAGAT)n |
Simple_repeat |
| scaffold15864 |
28265 |
28357 |
+ |
EnSpm-34_SBi |
DNA/CMC-EnSpm |
| scaffold15864 |
28660 |
28679 |
+ |
(AAC)n |
Simple_repeat |
| scaffold15864 |
28698 |
28852 |
+ |
(AACTTCAGAT)n |
Simple_repeat |
| scaffold15864 |
29111 |
29150 |
+ |
(T)n |
Simple_repeat |
| scaffold15864 |
29442 |
29469 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold15864 |
29512 |
29571 |
+ |
G-rich |
Low_complexity |
| scaffold15864 |
29987 |
30040 |
+ |
(GGTCTA)n |
Simple_repeat |
| scaffold15864 |
32126 |
32241 |
+ |
PL197 |
Unspecified |
| scaffold15864 |
34314 |
34770 |
- |
PL604 |
Unspecified |
| scaffold15864 |
35014 |
35181 |
+ |
RS1031 |
Unspecified |
| scaffold15864 |
35180 |
35426 |
+ |
RS9895 |
Unspecified |
| scaffold15864 |
35531 |
35554 |
+ |
A-rich |
Low_complexity |
| scaffold15864 |
35555 |
35606 |
+ |
(ATAATA)n |
Simple_repeat |
| scaffold15864 |
36075 |
36105 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold15864 |
37157 |
37204 |
+ |
(TTGGAA)n |
Simple_repeat |
| scaffold15864 |
37608 |
38735 |
- |
LINE1-66_SBi |
LINE/L1 |
| scaffold15864 |
39039 |
39104 |
+ |
(TGGTTG)n |
Simple_repeat |
| scaffold15864 |
39526 |
39601 |
+ |
(TGT)n |
Simple_repeat |
| scaffold15864 |
39983 |
40035 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold15864 |
40552 |
40582 |
+ |
A-rich |
Low_complexity |
| scaffold15864 |
40662 |
40908 |
- |
RS2914 |
Unspecified |
| scaffold15864 |
42755 |
42787 |
+ |
(T)n |
Simple_repeat |
| scaffold15864 |
42856 |
43098 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold15864 |
43020 |
43098 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold15864 |
43191 |
43234 |
+ |
(GGTTAGT)n |
Simple_repeat |
| scaffold15864 |
43317 |
43345 |
+ |
(T)n |
Simple_repeat |
| scaffold15864 |
43373 |
43451 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold15864 |
43466 |
43545 |
+ |
A-rich |
Low_complexity |
| scaffold15864 |
43640 |
43815 |
- |
EnSpm-11_STu |
DNA/CMC-EnSpm |
| scaffold15864 |
44086 |
44313 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold15864 |
44129 |
44279 |
+ |
L1-7_Mad |
LINE/L1 |
| scaffold15864 |
45642 |
45662 |
+ |
(A)n |
Simple_repeat |
| scaffold15864 |
46768 |
46785 |
+ |
A-rich |
Low_complexity |
| scaffold15864 |
46786 |
46809 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold15864 |
47122 |
47165 |
+ |
(TTAACA)n |
Simple_repeat |
| scaffold15864 |
47578 |
47738 |
+ |
RS6841 |
Unspecified |
| scaffold15864 |
47597 |
47841 |
+ |
RS4 |
Unspecified |
| scaffold15864 |
49160 |
49218 |
+ |
A-rich |
Low_complexity |
| scaffold15864 |
49363 |
49482 |
+ |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold15864 |
49798 |
49817 |
+ |
(AAT)n |
Simple_repeat |
| scaffold15864 |
49989 |
50066 |
+ |
(GGT)n |
Simple_repeat |
| scaffold15864 |
50281 |
50335 |
+ |
(CCTTC)n |
Simple_repeat |
| scaffold15864 |
51379 |
51447 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold15864 |
51683 |
51818 |
- |
RS1812 |
Unspecified |
| scaffold15864 |
51940 |
52095 |
+ |
(TC)n |
Simple_repeat |
| scaffold15864 |
52930 |
52957 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold15864 |
53016 |
53129 |
+ |
A-rich |
Low_complexity |
| scaffold15864 |
53799 |
53965 |
- |
RS324 |
Unspecified |
| scaffold15864 |
54070 |
54109 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold15864 |
54110 |
54121 |
+ |
ATRAN |
DNA? |
| scaffold15864 |
55587 |
55814 |
+ |
RS18 |
Unspecified |
| scaffold15864 |
56417 |
56462 |
+ |
(TATTCAA)n |
Simple_repeat |
| scaffold15864 |
56587 |
56662 |
+ |
(ATA)n |
Simple_repeat |
| scaffold15864 |
56679 |
56793 |
- |
Copia-66_GM-LTR |
LTR/Copia |
| scaffold15864 |
57010 |
57407 |
- |
Copia-86_VV-I |
LTR/Copia |
| scaffold15864 |
57408 |
57913 |
- |
Copia-86_VV-I |
LTR/Copia |
| scaffold15864 |
57889 |
58894 |
- |
Copia-86_VV-I |
LTR/Copia |
| scaffold15864 |
58876 |
59525 |
- |
Copia-86_VV-I |
LTR/Copia |
| scaffold15864 |
60203 |
60255 |
+ |
(ATTTTG)n |
Simple_repeat |
| scaffold15864 |
61003 |
61054 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold15864 |
61144 |
61176 |
+ |
(TCTTT)n |
Simple_repeat |
| scaffold15864 |
61309 |
61773 |
- |
RS514 |
Unspecified |
| scaffold15864 |
62104 |
62390 |
+ |
RS4686 |
Unspecified |
| scaffold15864 |
62264 |
62483 |
+ |
PL143 |
Unspecified |
| scaffold15864 |
62668 |
62714 |
+ |
(TATAGT)n |
Simple_repeat |
| scaffold15864 |
62999 |
63039 |
+ |
(TTGTTTG)n |
Simple_repeat |
| scaffold15864 |
63414 |
64020 |
- |
PL951 |
Unspecified |
| scaffold15864 |
63832 |
64160 |
- |
RS289 |
Unspecified |