scaffold16110 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold16110 |
540 |
562 |
+ |
(T)n |
Simple_repeat |
| scaffold16110 |
1918 |
1946 |
+ |
(T)n |
Simple_repeat |
| scaffold16110 |
2140 |
2169 |
+ |
(TA)n |
Simple_repeat |
| scaffold16110 |
2371 |
2461 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
2485 |
2587 |
+ |
ATCopia24I |
LTR/Copia |
| scaffold16110 |
3161 |
3207 |
+ |
(TA)n |
Simple_repeat |
| scaffold16110 |
3771 |
5474 |
- |
Gypsy-26_VV-I |
LTR/Gypsy |
| scaffold16110 |
3900 |
4232 |
- |
RS8556 |
Unspecified |
| scaffold16110 |
4412 |
4461 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
7390 |
7527 |
- |
RS6043 |
Unspecified |
| scaffold16110 |
7469 |
7578 |
- |
RS9534 |
Unspecified |
| scaffold16110 |
7591 |
7608 |
+ |
(T)n |
Simple_repeat |
| scaffold16110 |
8150 |
8629 |
- |
RS4135 |
Unspecified |
| scaffold16110 |
8633 |
8829 |
- |
RS3529 |
Unspecified |
| scaffold16110 |
9010 |
9056 |
+ |
EnSpm-34_SBi |
DNA/CMC-EnSpm |
| scaffold16110 |
9057 |
9194 |
+ |
(TAA)n |
Simple_repeat |
| scaffold16110 |
9399 |
9453 |
+ |
(CCAC)n |
Simple_repeat |
| scaffold16110 |
9528 |
9603 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
9808 |
10007 |
- |
RS3529 |
Unspecified |
| scaffold16110 |
10002 |
10098 |
- |
RS622 |
Unspecified |
| scaffold16110 |
10092 |
10323 |
+ |
RS4789 |
Unspecified |
| scaffold16110 |
10857 |
11320 |
- |
RS3207 |
Unspecified |
| scaffold16110 |
11198 |
11340 |
- |
RS2404 |
Unspecified |
| scaffold16110 |
11361 |
11511 |
- |
RS3483 |
Unspecified |
| scaffold16110 |
11563 |
11836 |
- |
RS4332 |
Unspecified |
| scaffold16110 |
11674 |
12017 |
- |
RS4576 |
Unspecified |
| scaffold16110 |
12199 |
12246 |
- |
RS4576 |
Unspecified |
| scaffold16110 |
12410 |
12465 |
- |
RS8556 |
Unspecified |
| scaffold16110 |
16880 |
16930 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
17261 |
17299 |
+ |
(ATAAA)n |
Simple_repeat |
| scaffold16110 |
17513 |
17552 |
+ |
(TCTTTAA)n |
Simple_repeat |
| scaffold16110 |
17950 |
18016 |
+ |
(TGT)n |
Simple_repeat |
| scaffold16110 |
18043 |
18083 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold16110 |
18188 |
18317 |
- |
RS18146 |
Unspecified |
| scaffold16110 |
19784 |
19812 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
22255 |
22301 |
+ |
(AACAAG)n |
Simple_repeat |
| scaffold16110 |
23014 |
23059 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
23910 |
23963 |
+ |
G-rich |
Low_complexity |
| scaffold16110 |
24177 |
24207 |
+ |
(GGA)n |
Simple_repeat |
| scaffold16110 |
24219 |
24410 |
+ |
GA-rich |
Low_complexity |
| scaffold16110 |
24452 |
24483 |
+ |
(AAGTG)n |
Simple_repeat |
| scaffold16110 |
24595 |
24691 |
+ |
(A)n |
Simple_repeat |
| scaffold16110 |
24779 |
24944 |
- |
RS5 |
Unspecified |
| scaffold16110 |
25246 |
25446 |
+ |
RS757 |
Unspecified |
| scaffold16110 |
26113 |
26376 |
- |
RS356 |
Unspecified |
| scaffold16110 |
27090 |
27138 |
+ |
(T)n |
Simple_repeat |
| scaffold16110 |
28144 |
28276 |
+ |
RS3354 |
Unspecified |
| scaffold16110 |
28277 |
28700 |
+ |
RS3354 |
Unspecified |
| scaffold16110 |
28803 |
28866 |
+ |
(GTTTG)n |
Simple_repeat |
| scaffold16110 |
29239 |
29267 |
+ |
(TTTAAC)n |
Simple_repeat |
| scaffold16110 |
29322 |
29361 |
+ |
(GTGTCC)n |
Simple_repeat |
| scaffold16110 |
29654 |
29689 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
29965 |
30016 |
- |
RS5 |
Unspecified |
| scaffold16110 |
30542 |
30662 |
+ |
RS18199 |
Unspecified |
| scaffold16110 |
31804 |
31848 |
+ |
(TTA)n |
Simple_repeat |
| scaffold16110 |
31937 |
32063 |
+ |
RS15925 |
Unspecified |
| scaffold16110 |
32109 |
32166 |
+ |
(CAAT)n |
Simple_repeat |
| scaffold16110 |
32742 |
32964 |
+ |
RS14744 |
Unspecified |
| scaffold16110 |
33010 |
33183 |
+ |
RS14269 |
Unspecified |
| scaffold16110 |
33330 |
33446 |
+ |
RS13935 |
Unspecified |
| scaffold16110 |
33493 |
33665 |
+ |
RS13277 |
Unspecified |
| scaffold16110 |
33973 |
34015 |
+ |
(ATA)n |
Simple_repeat |
| scaffold16110 |
35507 |
35702 |
+ |
PL358 |
Unspecified |
| scaffold16110 |
35787 |
35991 |
+ |
RS2584 |
Unspecified |
| scaffold16110 |
36329 |
36429 |
+ |
RS2584 |
Unspecified |
| scaffold16110 |
36925 |
37032 |
+ |
RS15925 |
Unspecified |
| scaffold16110 |
37438 |
37486 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
37520 |
37651 |
- |
PL271 |
Unspecified |
| scaffold16110 |
37520 |
37632 |
+ |
PL6 |
Unspecified |
| scaffold16110 |
37999 |
38040 |
+ |
(GAAGAC)n |
Simple_repeat |
| scaffold16110 |
38064 |
38114 |
+ |
GA-rich |
Low_complexity |
| scaffold16110 |
38617 |
38650 |
+ |
GA-rich |
Low_complexity |
| scaffold16110 |
39026 |
39146 |
+ |
RS18199 |
Unspecified |
| scaffold16110 |
40002 |
40025 |
+ |
(A)n |
Simple_repeat |
| scaffold16110 |
40332 |
42019 |
- |
PL647 |
Unspecified |
| scaffold16110 |
41149 |
42938 |
+ |
RS51 |
Unspecified |
| scaffold16110 |
42199 |
43163 |
- |
RS2700 |
Unspecified |
| scaffold16110 |
42722 |
43217 |
+ |
RS21 |
Unspecified |
| scaffold16110 |
43199 |
43578 |
+ |
RS730 |
Unspecified |
| scaffold16110 |
46399 |
46445 |
+ |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold16110 |
46934 |
47209 |
+ |
RS4346 |
Unspecified |
| scaffold16110 |
48450 |
48503 |
+ |
(TCAGCA)n |
Simple_repeat |
| scaffold16110 |
48521 |
50730 |
+ |
RS254 |
Unspecified |
| scaffold16110 |
50857 |
50884 |
+ |
(T)n |
Simple_repeat |
| scaffold16110 |
50981 |
51107 |
+ |
RS15925 |
Unspecified |
| scaffold16110 |
51154 |
51211 |
+ |
(CAAT)n |
Simple_repeat |
| scaffold16110 |
51786 |
52008 |
+ |
RS14744 |
Unspecified |
| scaffold16110 |
52054 |
52227 |
+ |
RS14269 |
Unspecified |
| scaffold16110 |
52300 |
52416 |
+ |
RS13935 |
Unspecified |
| scaffold16110 |
52460 |
52632 |
+ |
RS13277 |
Unspecified |
| scaffold16110 |
53924 |
53972 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
54077 |
54234 |
+ |
RS15925 |
Unspecified |
| scaffold16110 |
54785 |
54824 |
+ |
(TATAACT)n |
Simple_repeat |
| scaffold16110 |
54862 |
55079 |
+ |
RS14744 |
Unspecified |
| scaffold16110 |
55122 |
55295 |
+ |
RS14269 |
Unspecified |
| scaffold16110 |
55442 |
55558 |
+ |
RS13935 |
Unspecified |
| scaffold16110 |
55602 |
55774 |
+ |
RS13277 |
Unspecified |
| scaffold16110 |
57110 |
57145 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
58399 |
58455 |
+ |
(TCT)n |
Simple_repeat |
| scaffold16110 |
61573 |
61828 |
- |
RS1 |
Unspecified |
| scaffold16110 |
61894 |
61974 |
+ |
RS445 |
Unspecified |
| scaffold16110 |
62586 |
62607 |
+ |
(T)n |
Simple_repeat |
| scaffold16110 |
62938 |
63191 |
- |
Mariner1_BV |
DNA/TcMar-Stowaway |
| scaffold16110 |
63743 |
63950 |
+ |
(CTG)n |
Simple_repeat |
| scaffold16110 |
64610 |
64646 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
64799 |
64819 |
+ |
(ATTTTA)n |
Simple_repeat |
| scaffold16110 |
64820 |
64846 |
+ |
(T)n |
Simple_repeat |
| scaffold16110 |
64932 |
65048 |
+ |
RS5540 |
Unspecified |
| scaffold16110 |
65071 |
65433 |
+ |
RS6405 |
Unspecified |
| scaffold16110 |
65304 |
65776 |
- |
RS297 |
Unspecified |
| scaffold16110 |
65735 |
66076 |
+ |
RS1716 |
Unspecified |
| scaffold16110 |
66652 |
66690 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
66815 |
66844 |
+ |
(AAAATA)n |
Simple_repeat |
| scaffold16110 |
67602 |
67658 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
69057 |
69203 |
+ |
(TAT)n |
Simple_repeat |
| scaffold16110 |
69253 |
69278 |
+ |
(A)n |
Simple_repeat |
| scaffold16110 |
69559 |
69578 |
+ |
(TTG)n |
Simple_repeat |
| scaffold16110 |
69969 |
70210 |
+ |
RS4 |
Unspecified |
| scaffold16110 |
70265 |
70617 |
+ |
RS4042 |
Unspecified |
| scaffold16110 |
70910 |
70956 |
+ |
(TCAGC)n |
Simple_repeat |
| scaffold16110 |
71299 |
72040 |
+ |
PL209 |
Unspecified |
| scaffold16110 |
72104 |
72171 |
+ |
RS17105 |
Unspecified |
| scaffold16110 |
72599 |
72634 |
+ |
A-rich |
Low_complexity |
| scaffold16110 |
73492 |
73511 |
+ |
(T)n |
Simple_repeat |
| scaffold16110 |
74843 |
74871 |
+ |
(AT)n |
Simple_repeat |
| scaffold16110 |
76784 |
76816 |
+ |
(A)n |
Simple_repeat |
| scaffold16110 |
76936 |
77094 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold16110 |
77254 |
77389 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold16110 |
78333 |
78565 |
+ |
RS6018 |
Unspecified |
| scaffold16110 |
78558 |
78968 |
- |
PL621 |
Unspecified |
| scaffold16110 |
81466 |
82468 |
- |
COP3_I_MT-int |
LTR/Copia |
| scaffold16110 |
82641 |
84390 |
- |
COP3_I_MT-int |
LTR/Copia |
| scaffold16110 |
84596 |
85268 |
- |
COP3_I_MT-int |
LTR/Copia |
| scaffold16110 |
85367 |
85501 |
+ |
RS7600 |
Unspecified |
| scaffold16110 |
85397 |
85535 |
- |
RS8964 |
Unspecified |
| scaffold16110 |
85774 |
85876 |
+ |
RS4135 |
Unspecified |
| scaffold16110 |
86458 |
86485 |
+ |
(A)n |
Simple_repeat |
| scaffold16110 |
89533 |
89573 |
+ |
RS4576 |
Unspecified |
| scaffold16110 |
89970 |
90017 |
+ |
(TTTTGT)n |
Simple_repeat |
| scaffold16110 |
90099 |
90148 |
+ |
RS4576 |
Unspecified |
| scaffold16110 |
90972 |
91115 |
+ |
RS8556 |
Unspecified |
| scaffold16110 |
92018 |
92370 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold16110 |
92018 |
92306 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold16110 |
92018 |
92045 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold16110 |
92039 |
92370 |
+ |
PL153 |
Unspecified |
| scaffold16110 |
92040 |
92306 |
- |
PL753 |
Unspecified |
| scaffold16110 |
92253 |
92510 |
- |
PL753 |
Unspecified |
| scaffold16110 |
93162 |
93193 |
+ |
(ACC)n |
Simple_repeat |
| scaffold16110 |
93380 |
93436 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold16110 |
93571 |
93590 |
+ |
(TAA)n |
Simple_repeat |
| scaffold16110 |
98522 |
98553 |
+ |
(T)n |
Simple_repeat |
| scaffold16110 |
101958 |
101976 |
+ |
(A)n |
Simple_repeat |
| scaffold16110 |
104365 |
104412 |
+ |
(GGTCAA)n |
Simple_repeat |
| scaffold16110 |
105425 |
105634 |
- |
PL526 |
Unspecified |
| scaffold16110 |
105521 |
105675 |
+ |
RS11629 |
Unspecified |
| scaffold16110 |
105689 |
105739 |
+ |
(TTAG)n |
Simple_repeat |
| scaffold16110 |
105922 |
107165 |
+ |
RS1341 |
Unspecified |
| scaffold16110 |
108118 |
108184 |
+ |
GA-rich |
Low_complexity |