scaffold16318 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold16318 |
1 |
86 |
+ |
RS28 |
Unspecified |
scaffold16318 |
49 |
92 |
+ |
RS537 |
Unspecified |
scaffold16318 |
846 |
864 |
+ |
(TG)n |
Simple_repeat |
scaffold16318 |
870 |
911 |
+ |
(CTCAC)n |
Simple_repeat |
scaffold16318 |
907 |
958 |
+ |
(TTTACT)n |
Simple_repeat |
scaffold16318 |
1598 |
1621 |
+ |
(CAA)n |
Simple_repeat |
scaffold16318 |
1667 |
1722 |
+ |
(TCTACT)n |
Simple_repeat |
scaffold16318 |
1758 |
1805 |
+ |
(GTG)n |
Simple_repeat |
scaffold16318 |
2013 |
2034 |
+ |
(GTG)n |
Simple_repeat |
scaffold16318 |
6282 |
6355 |
+ |
(TATTAGT)n |
Simple_repeat |
scaffold16318 |
6592 |
6618 |
+ |
(GCTGG)n |
Simple_repeat |
scaffold16318 |
7578 |
7618 |
+ |
(TTTCATA)n |
Simple_repeat |
scaffold16318 |
7696 |
7792 |
- |
COPMET_LTR |
LTR/Copia |
scaffold16318 |
7892 |
7913 |
+ |
(A)n |
Simple_repeat |
scaffold16318 |
9129 |
9160 |
+ |
(T)n |
Simple_repeat |
scaffold16318 |
12594 |
12624 |
+ |
GA-rich |
Low_complexity |
scaffold16318 |
13814 |
13841 |
+ |
(AATGA)n |
Simple_repeat |
scaffold16318 |
13907 |
13982 |
+ |
A-rich |
Low_complexity |
scaffold16318 |
14349 |
14515 |
- |
RS1546 |
Unspecified |
scaffold16318 |
14580 |
14803 |
+ |
RS12788 |
Unspecified |
scaffold16318 |
14870 |
15081 |
+ |
RS6502 |
Unspecified |
scaffold16318 |
15508 |
15554 |
+ |
(TAATT)n |
Simple_repeat |
scaffold16318 |
16033 |
16066 |
+ |
A-rich |
Low_complexity |
scaffold16318 |
16097 |
16116 |
+ |
(T)n |
Simple_repeat |
scaffold16318 |
18612 |
18691 |
+ |
RS285 |
Unspecified |
scaffold16318 |
22911 |
23003 |
+ |
RS17600 |
Unspecified |
scaffold16318 |
23367 |
23547 |
+ |
EnSpm-9_STu |
DNA/CMC-EnSpm |
scaffold16318 |
25300 |
25628 |
- |
PL676 |
Unspecified |
scaffold16318 |
25931 |
26188 |
+ |
RS9730 |
Unspecified |
scaffold16318 |
26583 |
26898 |
- |
RS5445 |
Unspecified |
scaffold16318 |
26934 |
27097 |
+ |
RS1178 |
Unspecified |
scaffold16318 |
27105 |
27134 |
+ |
(TACATG)n |
Simple_repeat |
scaffold16318 |
28247 |
28277 |
+ |
(TGTTT)n |
Simple_repeat |
scaffold16318 |
30232 |
30423 |
+ |
RS324 |
Unspecified |
scaffold16318 |
31208 |
31233 |
+ |
(AAAT)n |
Simple_repeat |
scaffold16318 |
31227 |
31258 |
+ |
(TATAT)n |
Simple_repeat |
scaffold16318 |
31831 |
31885 |
+ |
A-rich |
Low_complexity |
scaffold16318 |
32286 |
32526 |
- |
RS4 |
Unspecified |
scaffold16318 |
32736 |
32762 |
+ |
(CAA)n |
Simple_repeat |
scaffold16318 |
33518 |
33605 |
+ |
RS18111 |
Unspecified |
scaffold16318 |
33542 |
33606 |
+ |
RS1258 |
Unspecified |
scaffold16318 |
34815 |
34834 |
+ |
(AAC)n |
Simple_repeat |
scaffold16318 |
39910 |
39969 |
- |
Gypsy-130_SBi-LTR |
LTR/Gypsy |
scaffold16318 |
40018 |
40069 |
+ |
(CCCTT)n |
Simple_repeat |
scaffold16318 |
41610 |
41903 |
+ |
(TAT)n |
Simple_repeat |
scaffold16318 |
41871 |
41903 |
+ |
(TAT)n |
Simple_repeat |
scaffold16318 |
41912 |
42148 |
+ |
RS782 |
Unspecified |
scaffold16318 |
42866 |
42942 |
+ |
(AGCTG)n |
Simple_repeat |
scaffold16318 |
44346 |
44476 |
+ |
RS1908 |
Unspecified |
scaffold16318 |
48275 |
48300 |
+ |
(A)n |
Simple_repeat |
scaffold16318 |
49478 |
49612 |
+ |
RS17466 |
Unspecified |
scaffold16318 |
53214 |
53504 |
+ |
RS13298 |
Unspecified |
scaffold16318 |
53587 |
54088 |
+ |
RS5763 |
Unspecified |
scaffold16318 |
54143 |
54330 |
+ |
RS2652 |
Unspecified |
scaffold16318 |
54378 |
54522 |
- |
RS11112 |
Unspecified |
scaffold16318 |
54689 |
55128 |
- |
RS7101 |
Unspecified |
scaffold16318 |
55439 |
55545 |
+ |
RS8199 |
Unspecified |
scaffold16318 |
55726 |
55828 |
+ |
RS11553 |
Unspecified |
scaffold16318 |
57321 |
57551 |
+ |
RS10192 |
Unspecified |
scaffold16318 |
57635 |
57868 |
- |
RS8929 |
Unspecified |
scaffold16318 |
57989 |
58144 |
+ |
RS9441 |
Unspecified |
scaffold16318 |
58708 |
58749 |
+ |
(CAA)n |
Simple_repeat |
scaffold16318 |
58782 |
58831 |
+ |
(GGTGGC)n |
Simple_repeat |
scaffold16318 |
61659 |
61795 |
+ |
RS13298 |
Unspecified |
scaffold16318 |
61809 |
61944 |
- |
RS1192 |
Unspecified |
scaffold16318 |
62152 |
62481 |
+ |
RS2605 |
Unspecified |
scaffold16318 |
62369 |
62496 |
+ |
RS18204 |
Unspecified |
scaffold16318 |
62646 |
62820 |
+ |
RS13070 |
Unspecified |
scaffold16318 |
64888 |
65207 |
+ |
RS155 |
Unspecified |
scaffold16318 |
65367 |
65403 |
+ |
(TTTA)n |
Simple_repeat |
scaffold16318 |
67078 |
67209 |
+ |
RS13070 |
Unspecified |
scaffold16318 |
67097 |
67213 |
+ |
RS13298 |
Unspecified |
scaffold16318 |
67215 |
67290 |
- |
RS7101 |
Unspecified |
scaffold16318 |
67349 |
67451 |
+ |
RS11553 |
Unspecified |
scaffold16318 |
67564 |
67783 |
- |
RS2731 |
Unspecified |
scaffold16318 |
67845 |
67956 |
+ |
RS6766 |
Unspecified |
scaffold16318 |
69537 |
69644 |
+ |
RS13070 |
Unspecified |
scaffold16318 |
73227 |
73382 |
+ |
RS13298 |
Unspecified |
scaffold16318 |
74350 |
74451 |
+ |
RS2605 |
Unspecified |
scaffold16318 |
74366 |
74548 |
- |
RS2148 |
Unspecified |
scaffold16318 |
74522 |
74634 |
+ |
RS5027 |
Unspecified |
scaffold16318 |
75832 |
76587 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold16318 |
75910 |
76383 |
+ |
Copia-71_VV-I |
LTR/Copia |
scaffold16318 |
76707 |
76847 |
+ |
RS13298 |
Unspecified |
scaffold16318 |
76940 |
77080 |
+ |
RS2605 |
Unspecified |
scaffold16318 |
76995 |
77189 |
- |
RS2148 |
Unspecified |
scaffold16318 |
77149 |
77282 |
+ |
RS5027 |
Unspecified |
scaffold16318 |
77435 |
77475 |
+ |
(CATTGT)n |
Simple_repeat |
scaffold16318 |
79810 |
80014 |
- |
RS3693 |
Unspecified |
scaffold16318 |
80175 |
80221 |
- |
RS2371 |
Unspecified |
scaffold16318 |
80362 |
80396 |
+ |
(TAA)n |
Simple_repeat |
scaffold16318 |
80809 |
80843 |
+ |
(CAATA)n |
Simple_repeat |
scaffold16318 |
80997 |
81752 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold16318 |
81075 |
81548 |
+ |
Copia-71_VV-I |
LTR/Copia |
scaffold16318 |
81810 |
82157 |
+ |
Copia-71_VV-I |
LTR/Copia |
scaffold16318 |
82254 |
83102 |
+ |
Copia-71_VV-I |
LTR/Copia |
scaffold16318 |
83445 |
84078 |
+ |
Copia-71_VV-I |
LTR/Copia |
scaffold16318 |
85373 |
85577 |
- |
RS3693 |
Unspecified |
scaffold16318 |
85738 |
85784 |
- |
RS2371 |
Unspecified |
scaffold16318 |
85925 |
85959 |
+ |
(TAA)n |
Simple_repeat |
scaffold16318 |
86370 |
86404 |
+ |
(CAATA)n |
Simple_repeat |
scaffold16318 |
87460 |
87657 |
- |
RS1482 |
Unspecified |
scaffold16318 |
89670 |
89973 |
+ |
RS13298 |
Unspecified |
scaffold16318 |
90133 |
90568 |
+ |
RS5763 |
Unspecified |
scaffold16318 |
90630 |
90820 |
+ |
RS2652 |
Unspecified |
scaffold16318 |
90872 |
90958 |
+ |
RS7055 |
Unspecified |
scaffold16318 |
91099 |
92776 |
- |
Copia-32-I_VV |
LTR/Copia |
scaffold16318 |
93116 |
93514 |
- |
Copia-32-I_VV |
LTR/Copia |
scaffold16318 |
93567 |
93634 |
- |
RS11112 |
Unspecified |
scaffold16318 |
93709 |
93912 |
+ |
RS1062 |
Unspecified |
scaffold16318 |
93810 |
93983 |
- |
RS620 |
Unspecified |
scaffold16318 |
94149 |
94605 |
- |
RS7101 |
Unspecified |
scaffold16318 |
95470 |
95587 |
- |
RS4158 |
Unspecified |
scaffold16318 |
95589 |
95619 |
+ |
A-rich |
Low_complexity |
scaffold16318 |
96001 |
96100 |
- |
RS7274 |
Unspecified |
scaffold16318 |
96065 |
96561 |
+ |
A-rich |
Low_complexity |
scaffold16318 |
96513 |
96561 |
+ |
A-rich |
Low_complexity |
scaffold16318 |
99638 |
99928 |
+ |
RS13298 |
Unspecified |
scaffold16318 |
99998 |
100499 |
+ |
RS5763 |
Unspecified |
scaffold16318 |
100555 |
100745 |
+ |
RS2652 |
Unspecified |
scaffold16318 |
100793 |
100938 |
- |
RS11112 |
Unspecified |
scaffold16318 |
100997 |
101436 |
- |
RS7101 |
Unspecified |
scaffold16318 |
102694 |
102924 |
+ |
RS10192 |
Unspecified |
scaffold16318 |
103008 |
103266 |
+ |
(CCA)n |
Simple_repeat |
scaffold16318 |
103232 |
103266 |
+ |
(CCA)n |
Simple_repeat |
scaffold16318 |
103324 |
103479 |
+ |
RS9441 |
Unspecified |
scaffold16318 |
104159 |
104208 |
+ |
(GGTGGC)n |
Simple_repeat |
scaffold16318 |
107017 |
107148 |
+ |
RS13070 |
Unspecified |
scaffold16318 |
107036 |
107156 |
+ |
RS13298 |
Unspecified |
scaffold16318 |
107152 |
107269 |
- |
RS1192 |
Unspecified |
scaffold16318 |
107490 |
107616 |
- |
RS9120 |
Unspecified |
scaffold16318 |
107695 |
109341 |
- |
Copia-2_BRa-I |
LTR/Copia |
scaffold16318 |
109739 |
111018 |
- |
Copia-2_BRa-I |
LTR/Copia |
scaffold16318 |
111636 |
112053 |
- |
Copia-2_BRa-I |
LTR/Copia |
scaffold16318 |
112168 |
112294 |
- |
RS9120 |
Unspecified |
scaffold16318 |
112384 |
112713 |
+ |
RS2605 |
Unspecified |
scaffold16318 |
112601 |
112728 |
+ |
RS18204 |
Unspecified |
scaffold16318 |
112878 |
113030 |
+ |
RS13070 |
Unspecified |
scaffold16318 |
113028 |
113295 |
+ |
RS10 |
Unspecified |
scaffold16318 |
116615 |
116762 |
+ |
RS13298 |
Unspecified |
scaffold16318 |
117053 |
117100 |
- |
RS4365 |
Unspecified |
scaffold16318 |
117122 |
117276 |
+ |
RS11243 |
Unspecified |
scaffold16318 |
117288 |
117427 |
+ |
RS2605 |
Unspecified |
scaffold16318 |
117342 |
117524 |
- |
RS2148 |
Unspecified |
scaffold16318 |
117498 |
117610 |
+ |
RS5027 |
Unspecified |
scaffold16318 |
120797 |
121102 |
+ |
RS13070 |
Unspecified |
scaffold16318 |
120963 |
121258 |
- |
RS2731 |
Unspecified |
scaffold16318 |
121287 |
121422 |
+ |
RS9816 |
Unspecified |
scaffold16318 |
121376 |
121508 |
- |
RS2731 |
Unspecified |
scaffold16318 |
121520 |
121561 |
+ |
(TAGAGG)n |
Simple_repeat |
scaffold16318 |
121612 |
121664 |
- |
RS7274 |
Unspecified |
scaffold16318 |
121629 |
122120 |
+ |
A-rich |
Low_complexity |
scaffold16318 |
122072 |
122120 |
+ |
A-rich |
Low_complexity |
scaffold16318 |
125344 |
125471 |
- |
RS1192 |
Unspecified |
scaffold16318 |
125573 |
125738 |
- |
RS4365 |
Unspecified |
scaffold16318 |
125617 |
126011 |
- |
RS2731 |
Unspecified |
scaffold16318 |
126032 |
126169 |
- |
RS7274 |
Unspecified |
scaffold16318 |
126134 |
126404 |
+ |
RS14065 |
Unspecified |
scaffold16318 |
126510 |
126622 |
+ |
RS14065 |
Unspecified |
scaffold16318 |
127289 |
127315 |
+ |
(TTTTC)n |
Simple_repeat |
scaffold16318 |
127495 |
128325 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold16318 |
127547 |
127674 |
+ |
Copia-6_ST-I |
LTR/Copia |
scaffold16318 |
128640 |
130190 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold16318 |
128675 |
128885 |
+ |
Copia-6_ST-I |
LTR/Copia |
scaffold16318 |
129175 |
129953 |
+ |
Copia-6_ST-I |
LTR/Copia |
scaffold16318 |
130412 |
131963 |
+ |
Copia-6_ST-I |
LTR/Copia |
scaffold16318 |
135194 |
135334 |
+ |
RS13298 |
Unspecified |
scaffold16318 |
135366 |
135472 |
- |
RS1192 |
Unspecified |
scaffold16318 |
135494 |
135622 |
+ |
RS2605 |
Unspecified |
scaffold16318 |
135536 |
135732 |
- |
RS2148 |
Unspecified |
scaffold16318 |
135692 |
135834 |
+ |
RS5027 |
Unspecified |
scaffold16318 |
135889 |
135981 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold16318 |
136079 |
136394 |
+ |
RS13070 |
Unspecified |
scaffold16318 |
136465 |
136491 |
+ |
(TTTTC)n |
Simple_repeat |
scaffold16318 |
136509 |
136666 |
+ |
RS4157 |
Unspecified |
scaffold16318 |
137073 |
137204 |
+ |
RS13070 |
Unspecified |
scaffold16318 |
137092 |
137212 |
+ |
RS13298 |
Unspecified |
scaffold16318 |
137208 |
137325 |
- |
RS1192 |
Unspecified |
scaffold16318 |
137546 |
137605 |
- |
RS9120 |
Unspecified |
scaffold16318 |
137626 |
137752 |
- |
RS9120 |
Unspecified |
scaffold16318 |
137842 |
138171 |
+ |
RS2605 |
Unspecified |
scaffold16318 |
138059 |
138186 |
+ |
RS18204 |
Unspecified |
scaffold16318 |
138336 |
138488 |
+ |
RS13070 |
Unspecified |