scaffold1638 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold1638 |
1 |
310 |
- |
RS235 |
Unspecified |
| scaffold1638 |
364 |
492 |
- |
cacta |
cacta(TransposonPSI) |
| scaffold1638 |
1165 |
1190 |
+ |
(T)n |
Simple_repeat |
| scaffold1638 |
1191 |
1199 |
+ |
(TTTTTC)n |
Simple_repeat |
| scaffold1638 |
1388 |
5764 |
- |
Copia-66_GM-I |
LTR/Copia |
| scaffold1638 |
6229 |
6348 |
- |
Copia-66_GM-I |
LTR/Copia |
| scaffold1638 |
6389 |
6513 |
- |
Copia-66_GM-I |
LTR/Copia |
| scaffold1638 |
7242 |
7320 |
- |
Copia-66_GM-I |
LTR/Copia |
| scaffold1638 |
7242 |
7486 |
- |
Copia-66_GM-I |
LTR/Copia |
| scaffold1638 |
7242 |
7636 |
- |
Copia-66_GM-I |
LTR/Copia |
| scaffold1638 |
7282 |
7486 |
- |
RS1704 |
Unspecified |
| scaffold1638 |
7304 |
7636 |
- |
RS1150 |
Unspecified |
| scaffold1638 |
7700 |
7772 |
+ |
(ATA)n |
Simple_repeat |
| scaffold1638 |
8457 |
8480 |
+ |
(T)n |
Simple_repeat |
| scaffold1638 |
8556 |
8585 |
+ |
(T)n |
Simple_repeat |
| scaffold1638 |
8642 |
9078 |
+ |
PL597 |
Unspecified |
| scaffold1638 |
8901 |
9299 |
- |
RS138 |
Unspecified |
| scaffold1638 |
10870 |
10907 |
+ |
A-rich |
Low_complexity |
| scaffold1638 |
11347 |
11370 |
+ |
(T)n |
Simple_repeat |
| scaffold1638 |
11446 |
11475 |
+ |
(T)n |
Simple_repeat |
| scaffold1638 |
11532 |
11639 |
- |
RS1159 |
Unspecified |
| scaffold1638 |
11683 |
11941 |
- |
RS138 |
Unspecified |
| scaffold1638 |
13512 |
13549 |
+ |
A-rich |
Low_complexity |
| scaffold1638 |
14656 |
14918 |
- |
RS1 |
Unspecified |
| scaffold1638 |
15057 |
15293 |
+ |
RS15131 |
Unspecified |
| scaffold1638 |
15451 |
15522 |
+ |
RS60 |
Unspecified |
| scaffold1638 |
15671 |
15759 |
+ |
(CT)n |
Simple_repeat |
| scaffold1638 |
15946 |
16011 |
+ |
(TTG)n |
Simple_repeat |
| scaffold1638 |
16782 |
16814 |
+ |
(A)n |
Simple_repeat |
| scaffold1638 |
16918 |
16974 |
+ |
A-rich |
Low_complexity |
| scaffold1638 |
17339 |
17465 |
+ |
(ATCAACA)n |
Simple_repeat |
| scaffold1638 |
17498 |
18208 |
+ |
RS1005 |
Unspecified |
| scaffold1638 |
18964 |
19086 |
- |
RS10405 |
Unspecified |
| scaffold1638 |
19581 |
19686 |
+ |
RS1663 |
Unspecified |
| scaffold1638 |
20099 |
20138 |
+ |
G-rich |
Low_complexity |
| scaffold1638 |
20283 |
20344 |
+ |
RS15891 |
Unspecified |
| scaffold1638 |
20644 |
20954 |
+ |
PL9 |
Unspecified |
| scaffold1638 |
21488 |
21548 |
+ |
A-rich |
Low_complexity |
| scaffold1638 |
21660 |
21704 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold1638 |
25367 |
25423 |
+ |
G-rich |
Low_complexity |
| scaffold1638 |
25493 |
25510 |
+ |
(T)n |
Simple_repeat |
| scaffold1638 |
25540 |
25721 |
- |
PL476 |
Unspecified |
| scaffold1638 |
25705 |
26037 |
+ |
(AACACA)n |
Simple_repeat |
| scaffold1638 |
26327 |
26351 |
+ |
(T)n |
Simple_repeat |
| scaffold1638 |
26648 |
26744 |
- |
RS4475 |
Unspecified |
| scaffold1638 |
26743 |
26884 |
- |
PL476 |
Unspecified |
| scaffold1638 |
26882 |
26970 |
+ |
RS4475 |
Unspecified |
| scaffold1638 |
26970 |
27072 |
+ |
(TAC)n |
Simple_repeat |
| scaffold1638 |
27450 |
27647 |
- |
PL296 |
Unspecified |
| scaffold1638 |
27479 |
27647 |
+ |
PL169 |
Unspecified |
| scaffold1638 |
27655 |
27845 |
- |
RS8244 |
Unspecified |
| scaffold1638 |
27904 |
29040 |
+ |
Copia-36_Pru-I |
LTR/Copia |
| scaffold1638 |
29041 |
29231 |
- |
RS8244 |
Unspecified |
| scaffold1638 |
29734 |
29767 |
+ |
(ATAATC)n |
Simple_repeat |
| scaffold1638 |
29768 |
29785 |
+ |
A-rich |
Low_complexity |
| scaffold1638 |
30237 |
30271 |
+ |
(GGTCG)n |
Simple_repeat |
| scaffold1638 |
30393 |
30432 |
+ |
(GGTTAG)n |
Simple_repeat |
| scaffold1638 |
30539 |
30582 |
+ |
A-rich |
Low_complexity |
| scaffold1638 |
30610 |
30662 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1638 |
30663 |
30893 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1638 |
30962 |
31046 |
- |
Copia-75_ST-I |
LTR/Copia |
| scaffold1638 |
31234 |
31334 |
- |
RS12517 |
Unspecified |
| scaffold1638 |
31240 |
31358 |
- |
RS9351 |
Unspecified |
| scaffold1638 |
31453 |
31517 |
+ |
(GACC)n |
Simple_repeat |
| scaffold1638 |
31624 |
31664 |
+ |
(CCGCCA)n |
Simple_repeat |
| scaffold1638 |
31696 |
31753 |
+ |
(ATA)n |
Simple_repeat |
| scaffold1638 |
31897 |
32065 |
- |
PL386 |
Unspecified |
| scaffold1638 |
32098 |
32149 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1638 |
32284 |
32396 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold1638 |
32458 |
32500 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold1638 |
32500 |
32620 |
- |
PL386 |
Unspecified |
| scaffold1638 |
34190 |
34284 |
+ |
(TTC)n |
Simple_repeat |
| scaffold1638 |
34953 |
34979 |
+ |
(T)n |
Simple_repeat |
| scaffold1638 |
38354 |
38692 |
- |
PL204 |
Unspecified |
| scaffold1638 |
38690 |
38727 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold1638 |
38763 |
38789 |
+ |
(T)n |
Simple_repeat |
| scaffold1638 |
39029 |
39075 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold1638 |
39941 |
39973 |
+ |
PL198 |
Unspecified |
| scaffold1638 |
40689 |
40747 |
+ |
RS7062 |
Unspecified |
| scaffold1638 |
40748 |
41170 |
- |
PL158 |
Unspecified |
| scaffold1638 |
41171 |
41916 |
- |
PL21 |
Unspecified |
| scaffold1638 |
42188 |
42241 |
+ |
(TAA)n |
Simple_repeat |
| scaffold1638 |
42550 |
42890 |
+ |
RS4408 |
Unspecified |
| scaffold1638 |
42891 |
43220 |
+ |
RS7062 |
Unspecified |
| scaffold1638 |
43234 |
43301 |
+ |
RS8903 |
Unspecified |
| scaffold1638 |
43364 |
43469 |
+ |
RS8903 |
Unspecified |
| scaffold1638 |
43491 |
43734 |
+ |
RS546 |
Unspecified |
| scaffold1638 |
43723 |
43837 |
- |
RS8 |
Unspecified |
| scaffold1638 |
43974 |
44002 |
+ |
(ATTG)n |
Simple_repeat |
| scaffold1638 |
44452 |
44714 |
+ |
RS82 |
Unspecified |
| scaffold1638 |
44945 |
45492 |
- |
PL799 |
Unspecified |
| scaffold1638 |
45578 |
45653 |
+ |
(TTTCTT)n |
Simple_repeat |
| scaffold1638 |
45665 |
45751 |
+ |
(AAC)n |
Simple_repeat |
| scaffold1638 |
45831 |
45864 |
+ |
(CT)n |
Simple_repeat |
| scaffold1638 |
45910 |
46076 |
+ |
RS17120 |
Unspecified |
| scaffold1638 |
46293 |
46390 |
- |
RS8412 |
Unspecified |
| scaffold1638 |
46304 |
46472 |
- |
RS3979 |
Unspecified |
| scaffold1638 |
46519 |
46624 |
+ |
RS14538 |
Unspecified |
| scaffold1638 |
46758 |
46854 |
+ |
RS8461 |
Unspecified |
| scaffold1638 |
48831 |
48901 |
+ |
(TTGA)n |
Simple_repeat |
| scaffold1638 |
49516 |
49552 |
+ |
(A)n |
Simple_repeat |
| scaffold1638 |
49873 |
50065 |
- |
RS1728 |
Unspecified |
| scaffold1638 |
51457 |
51516 |
+ |
RS222 |
Unspecified |
| scaffold1638 |
51652 |
51689 |
+ |
(AAGACTG)n |
Simple_repeat |
| scaffold1638 |
51710 |
51763 |
+ |
Copia-50_SB-I |
LTR/Copia |
| scaffold1638 |
52325 |
52671 |
- |
RS795 |
Unspecified |
| scaffold1638 |
52701 |
53256 |
+ |
PL53 |
Unspecified |
| scaffold1638 |
53829 |
53913 |
- |
RS13475 |
Unspecified |
| scaffold1638 |
53959 |
53980 |
+ |
(TA)n |
Simple_repeat |
| scaffold1638 |
54032 |
54050 |
+ |
(T)n |
Simple_repeat |
| scaffold1638 |
54310 |
54355 |
+ |
GA-rich |
Low_complexity |
| scaffold1638 |
54620 |
54661 |
+ |
(TTA)n |
Simple_repeat |
| scaffold1638 |
54662 |
54680 |
+ |
(TTGATTA)n |
Simple_repeat |
| scaffold1638 |
54760 |
55125 |
+ |
PL822 |
Unspecified |
| scaffold1638 |
57629 |
58256 |
- |
RS23 |
Unspecified |
| scaffold1638 |
58495 |
58830 |
+ |
RS5987 |
Unspecified |
| scaffold1638 |
59536 |
59675 |
+ |
Gypsy-21_ST-I |
LTR/Gypsy |
| scaffold1638 |
60589 |
60724 |
+ |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold1638 |
61477 |
61514 |
+ |
(ATTCTG)n |
Simple_repeat |
| scaffold1638 |
63367 |
63406 |
+ |
(TTCACTA)n |
Simple_repeat |