scaffold16817 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold16817 |
121 |
181 |
+ |
(TATTCAA)n |
Simple_repeat |
| scaffold16817 |
182 |
735 |
+ |
PL951 |
Unspecified |
| scaffold16817 |
256 |
722 |
+ |
PL49 |
Unspecified |
| scaffold16817 |
754 |
812 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold16817 |
895 |
963 |
+ |
A-rich |
Low_complexity |
| scaffold16817 |
1093 |
1156 |
+ |
(TAA)n |
Simple_repeat |
| scaffold16817 |
1595 |
1631 |
+ |
(TAT)n |
Simple_repeat |
| scaffold16817 |
1946 |
1988 |
+ |
GA-rich |
Low_complexity |
| scaffold16817 |
2070 |
2103 |
+ |
(TGTATT)n |
Simple_repeat |
| scaffold16817 |
2351 |
2407 |
+ |
A-rich |
Low_complexity |
| scaffold16817 |
2742 |
2847 |
- |
RS4063 |
Unspecified |
| scaffold16817 |
2775 |
2880 |
- |
RS4063 |
Unspecified |
| scaffold16817 |
2812 |
2937 |
+ |
RS426 |
Unspecified |
| scaffold16817 |
2926 |
3316 |
+ |
PL800 |
Unspecified |
| scaffold16817 |
3668 |
3715 |
+ |
A-rich |
Low_complexity |
| scaffold16817 |
4341 |
4440 |
- |
RS8419 |
Unspecified |
| scaffold16817 |
4551 |
4727 |
+ |
RS18217 |
Unspecified |
| scaffold16817 |
5272 |
5326 |
+ |
(GTAACA)n |
Simple_repeat |
| scaffold16817 |
5309 |
5426 |
+ |
(CAA)n |
Simple_repeat |
| scaffold16817 |
5585 |
5642 |
+ |
RS6069 |
Unspecified |
| scaffold16817 |
6599 |
7079 |
+ |
Copia10-VV_I-int |
LTR/Copia |
| scaffold16817 |
6983 |
7019 |
+ |
(TAATGA)n |
Simple_repeat |
| scaffold16817 |
7569 |
7604 |
- |
Gypsy-34_SB-I |
LTR/Gypsy |
| scaffold16817 |
8312 |
8369 |
+ |
(T)n |
Simple_repeat |
| scaffold16817 |
8419 |
8484 |
- |
Gypsy-34_SB-I |
LTR/Gypsy |
| scaffold16817 |
9255 |
9836 |
+ |
RS10415 |
Unspecified |
| scaffold16817 |
9846 |
9947 |
- |
RS5507 |
Unspecified |
| scaffold16817 |
10532 |
10638 |
+ |
(GGT)n |
Simple_repeat |
| scaffold16817 |
10700 |
10802 |
+ |
(TGG)n |
Simple_repeat |
| scaffold16817 |
10828 |
10882 |
+ |
(T)n |
Simple_repeat |
| scaffold16817 |
11625 |
14450 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold16817 |
14638 |
15251 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold16817 |
16322 |
16798 |
- |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold16817 |
16808 |
16846 |
+ |
(GAAATATCC)n |
Simple_repeat |
| scaffold16817 |
16985 |
17143 |
+ |
RS2782 |
Unspecified |
| scaffold16817 |
17048 |
17922 |
- |
RS116 |
Unspecified |
| scaffold16817 |
17280 |
18508 |
- |
RS553 |
Unspecified |
| scaffold16817 |
18520 |
18665 |
+ |
RS10668 |
Unspecified |
| scaffold16817 |
19467 |
19604 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold16817 |
19741 |
19911 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold16817 |
20094 |
22314 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold16817 |
22450 |
24734 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold16817 |
25347 |
25371 |
+ |
(AC)n |
Simple_repeat |
| scaffold16817 |
27307 |
27343 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold16817 |
27531 |
27634 |
+ |
(TTTAGT)n |
Simple_repeat |
| scaffold16817 |
28684 |
28705 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold16817 |
30184 |
30228 |
+ |
(T)n |
Simple_repeat |
| scaffold16817 |
30356 |
30398 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold16817 |
30834 |
30876 |
+ |
(TTATTC)n |
Simple_repeat |
| scaffold16817 |
34580 |
34698 |
+ |
(TCTTTT)n |
Simple_repeat |
| scaffold16817 |
34580 |
34630 |
+ |
(TCTTTT)n |
Simple_repeat |
| scaffold16817 |
34618 |
34698 |
+ |
RS10491 |
Unspecified |
| scaffold16817 |
34694 |
34842 |
+ |
RS10491 |
Unspecified |
| scaffold16817 |
44433 |
44488 |
+ |
(ATAT)n |
Simple_repeat |
| scaffold16817 |
45067 |
45369 |
- |
PL9 |
Unspecified |
| scaffold16817 |
46156 |
46189 |
+ |
(AACA)n |
Simple_repeat |
| scaffold16817 |
47693 |
47744 |
+ |
(TTAGT)n |
Simple_repeat |
| scaffold16817 |
48357 |
48491 |
+ |
Gypsy-9_Mad-I |
LTR/Gypsy |
| scaffold16817 |
49142 |
49782 |
+ |
RS695 |
Unspecified |
| scaffold16817 |
50194 |
50210 |
+ |
(CTT)n |
Simple_repeat |
| scaffold16817 |
50362 |
50503 |
+ |
RS1543 |
Unspecified |
| scaffold16817 |
50893 |
51213 |
- |
RS15876 |
Unspecified |
| scaffold16817 |
51525 |
51548 |
+ |
(A)n |
Simple_repeat |
| scaffold16817 |
52166 |
52225 |
+ |
(ACTTTT)n |
Simple_repeat |
| scaffold16817 |
54612 |
55010 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold16817 |
54636 |
54851 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold16817 |
54654 |
54714 |
- |
Copia-81_GM-I |
LTR/Copia |
| scaffold16817 |
55374 |
55598 |
- |
RS13321 |
Unspecified |
| scaffold16817 |
56070 |
56096 |
+ |
(ATAAA)n |
Simple_repeat |
| scaffold16817 |
56380 |
56401 |
+ |
(TAAA)n |
Simple_repeat |
| scaffold16817 |
57335 |
57368 |
+ |
(AACA)n |
Simple_repeat |
| scaffold16817 |
58718 |
59144 |
+ |
PL607 |
Unspecified |
| scaffold16817 |
61693 |
61727 |
+ |
GA-rich |
Low_complexity |
| scaffold16817 |
61883 |
61937 |
- |
RS14685 |
Unspecified |
| scaffold16817 |
61939 |
62035 |
+ |
RS931 |
Unspecified |
| scaffold16817 |
62237 |
62743 |
+ |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold16817 |
63702 |
64177 |
+ |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold16817 |
64554 |
64602 |
+ |
Alfare1_I-int |
LTR/Copia? |
| scaffold16817 |
64615 |
64652 |
+ |
(AACAGAA)n |
Simple_repeat |
| scaffold16817 |
64962 |
65063 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold16817 |
65101 |
65243 |
+ |
Ogre-MT3_I-int |
LTR/Gypsy |
| scaffold16817 |
66428 |
66462 |
+ |
(TTCTTGA)n |
Simple_repeat |
| scaffold16817 |
67609 |
67635 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold16817 |
67683 |
67703 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold16817 |
67704 |
67765 |
+ |
A-rich |
Low_complexity |
| scaffold16817 |
67766 |
67781 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold16817 |
68186 |
68628 |
- |
RS3870 |
Unspecified |
| scaffold16817 |
68246 |
68689 |
- |
RS3487 |
Unspecified |
| scaffold16817 |
69640 |
69741 |
+ |
RS64 |
Unspecified |
| scaffold16817 |
72721 |
73179 |
+ |
RS1216 |
Unspecified |
| scaffold16817 |
74337 |
75964 |
+ |
Gypsy-3_Pru-I |
LTR/Gypsy |
| scaffold16817 |
76367 |
76781 |
+ |
Gypsy-3_Pru-I |
LTR/Gypsy |
| scaffold16817 |
76836 |
76926 |
+ |
Gypsy-3_Pru-I |
LTR/Gypsy |
| scaffold16817 |
76932 |
77048 |
+ |
DANIELA_TM-int |
LTR/Gypsy |
| scaffold16817 |
77410 |
77487 |
+ |
ATGP5LTR |
LTR/Gypsy |
| scaffold16817 |
77421 |
77510 |
+ |
Copia-90_Mad-I |
LTR/Copia |
| scaffold16817 |
77804 |
78112 |
- |
RS1865 |
Unspecified |
| scaffold16817 |
77845 |
78293 |
+ |
PL670 |
Unspecified |