scaffold17372 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold17372 |
227 |
255 |
+ |
(AAC)n |
Simple_repeat |
| scaffold17372 |
504 |
705 |
+ |
RS14412 |
Unspecified |
| scaffold17372 |
1121 |
1192 |
+ |
GA-rich |
Low_complexity |
| scaffold17372 |
1534 |
1576 |
+ |
EnSpm-36_SBi |
DNA/CMC-EnSpm |
| scaffold17372 |
1577 |
1678 |
- |
ENSPM-6_ZM |
DNA/CMC-EnSpm |
| scaffold17372 |
1679 |
1721 |
+ |
EnSpm-36_SBi |
DNA/CMC-EnSpm |
| scaffold17372 |
2638 |
3818 |
+ |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold17372 |
2750 |
2827 |
+ |
(AATTCGT)n |
Simple_repeat |
| scaffold17372 |
3065 |
3122 |
- |
hAT-N14_SBi |
DNA/hAT-Tag1 |
| scaffold17372 |
3867 |
3948 |
+ |
(AAT)n |
Simple_repeat |
| scaffold17372 |
4475 |
4650 |
+ |
PL728 |
Unspecified |
| scaffold17372 |
4749 |
4771 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
5058 |
5202 |
+ |
RS343 |
Unspecified |
| scaffold17372 |
5251 |
5586 |
- |
PL568 |
Unspecified |
| scaffold17372 |
5587 |
7661 |
- |
RS934 |
Unspecified |
| scaffold17372 |
6708 |
8104 |
+ |
RS1496 |
Unspecified |
| scaffold17372 |
8321 |
8679 |
- |
PL158 |
Unspecified |
| scaffold17372 |
11417 |
11452 |
+ |
(TTCCTC)n |
Simple_repeat |
| scaffold17372 |
11664 |
11696 |
+ |
A-rich |
Low_complexity |
| scaffold17372 |
12184 |
12226 |
+ |
(AACTAA)n |
Simple_repeat |
| scaffold17372 |
12228 |
13098 |
- |
PL158 |
Unspecified |
| scaffold17372 |
13273 |
13592 |
+ |
RS4408 |
Unspecified |
| scaffold17372 |
14905 |
14934 |
+ |
(ATT)n |
Simple_repeat |
| scaffold17372 |
15000 |
15024 |
+ |
(A)n |
Simple_repeat |
| scaffold17372 |
15538 |
15858 |
+ |
(TCCGG)n |
Simple_repeat |
| scaffold17372 |
16701 |
16849 |
- |
EnSpm-38_SBi |
DNA/CMC-EnSpm |
| scaffold17372 |
16701 |
17127 |
- |
EnSpm-38_SBi |
DNA/CMC-EnSpm |
| scaffold17372 |
16782 |
17127 |
- |
RS548 |
Unspecified |
| scaffold17372 |
17048 |
17149 |
+ |
RS17209 |
Unspecified |
| scaffold17372 |
17162 |
17201 |
+ |
RS17209 |
Unspecified |
| scaffold17372 |
17486 |
17516 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
17832 |
17970 |
- |
RS554 |
Unspecified |
| scaffold17372 |
17954 |
18018 |
- |
RS554 |
Unspecified |
| scaffold17372 |
18523 |
18549 |
+ |
A-rich |
Low_complexity |
| scaffold17372 |
18724 |
18753 |
+ |
(ATAGA)n |
Simple_repeat |
| scaffold17372 |
19068 |
19114 |
+ |
(TTGA)n |
Simple_repeat |
| scaffold17372 |
22191 |
22219 |
+ |
(A)n |
Simple_repeat |
| scaffold17372 |
22433 |
22466 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
26673 |
26703 |
+ |
(TCA)n |
Simple_repeat |
| scaffold17372 |
30214 |
30564 |
+ |
RS13658 |
Unspecified |
| scaffold17372 |
30335 |
30713 |
+ |
RS13658 |
Unspecified |
| scaffold17372 |
31677 |
31927 |
- |
RS548 |
Unspecified |
| scaffold17372 |
31717 |
32066 |
- |
RS13658 |
Unspecified |
| scaffold17372 |
32646 |
32671 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
33015 |
33031 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
33015 |
33165 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
33027 |
33165 |
+ |
RS14633 |
Unspecified |
| scaffold17372 |
37337 |
37366 |
+ |
(TGC)n |
Simple_repeat |
| scaffold17372 |
40439 |
40494 |
- |
HAT-16_Mad |
DNA/hAT-Ac |
| scaffold17372 |
43711 |
43756 |
+ |
A-rich |
Low_complexity |
| scaffold17372 |
43796 |
43881 |
+ |
(A)n |
Simple_repeat |
| scaffold17372 |
43958 |
43990 |
+ |
(A)n |
Simple_repeat |
| scaffold17372 |
44033 |
44067 |
+ |
(A)n |
Simple_repeat |
| scaffold17372 |
44159 |
44199 |
+ |
(TATT)n |
Simple_repeat |
| scaffold17372 |
44209 |
44237 |
+ |
A-rich |
Low_complexity |
| scaffold17372 |
44282 |
44362 |
+ |
GA-rich |
Low_complexity |
| scaffold17372 |
44484 |
44509 |
+ |
(TG)n |
Simple_repeat |
| scaffold17372 |
44539 |
44914 |
- |
RS8 |
Unspecified |
| scaffold17372 |
45011 |
45159 |
+ |
RS459 |
Unspecified |
| scaffold17372 |
45495 |
45528 |
+ |
(GAATGAT)n |
Simple_repeat |
| scaffold17372 |
45703 |
45745 |
+ |
(AGTATT)n |
Simple_repeat |
| scaffold17372 |
46100 |
46134 |
+ |
(AAT)n |
Simple_repeat |
| scaffold17372 |
46483 |
46722 |
+ |
SSU-rRNA_Ath |
rRNA |
| scaffold17372 |
46762 |
47045 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
46942 |
47045 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
47196 |
47249 |
+ |
(AATT)n |
Simple_repeat |
| scaffold17372 |
47307 |
47377 |
+ |
(AATTGAA)n |
Simple_repeat |
| scaffold17372 |
47386 |
47484 |
- |
PL610 |
Unspecified |
| scaffold17372 |
47423 |
47497 |
+ |
PL797 |
Unspecified |
| scaffold17372 |
47592 |
47650 |
+ |
A-rich |
Low_complexity |
| scaffold17372 |
47838 |
48018 |
+ |
RS1115 |
Unspecified |
| scaffold17372 |
49124 |
49186 |
+ |
(TAA)n |
Simple_repeat |
| scaffold17372 |
49333 |
49498 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold17372 |
49562 |
49650 |
+ |
A-rich |
Low_complexity |
| scaffold17372 |
50510 |
50758 |
- |
RS26 |
Unspecified |
| scaffold17372 |
51080 |
51439 |
- |
RS8 |
Unspecified |
| scaffold17372 |
51808 |
51841 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold17372 |
52694 |
52727 |
+ |
(TTT)n |
Simple_repeat |
| scaffold17372 |
52826 |
52850 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
52903 |
53064 |
- |
RS5 |
Unspecified |
| scaffold17372 |
53173 |
53403 |
- |
RS376 |
Unspecified |
| scaffold17372 |
53321 |
53420 |
+ |
RS3380 |
Unspecified |
| scaffold17372 |
54209 |
54280 |
+ |
(CCGCC)n |
Simple_repeat |
| scaffold17372 |
55931 |
55937 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold17372 |
55938 |
55980 |
+ |
(TTTGTCA)n |
Simple_repeat |
| scaffold17372 |
56220 |
56500 |
+ |
ENSPM-6_ZM |
DNA/CMC-EnSpm |
| scaffold17372 |
57211 |
57238 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold17372 |
57886 |
57921 |
+ |
(ACACTAT)n |
Simple_repeat |
| scaffold17372 |
58087 |
58131 |
+ |
A-rich |
Low_complexity |
| scaffold17372 |
58357 |
58417 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold17372 |
58521 |
58541 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
58578 |
58615 |
+ |
A-rich |
Low_complexity |
| scaffold17372 |
58910 |
58980 |
+ |
(ACAT)n |
Simple_repeat |
| scaffold17372 |
61066 |
61109 |
+ |
(ATATGATC)n |
Simple_repeat |
| scaffold17372 |
61243 |
61264 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
61752 |
61778 |
+ |
(TTA)n |
Simple_repeat |
| scaffold17372 |
63381 |
63601 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold17372 |
65313 |
65502 |
- |
RS908 |
Unspecified |
| scaffold17372 |
65714 |
65900 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold17372 |
65714 |
65863 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold17372 |
65849 |
65900 |
- |
RS14977 |
Unspecified |
| scaffold17372 |
69155 |
69268 |
+ |
RS15553 |
Unspecified |
| scaffold17372 |
69948 |
69979 |
+ |
(CAT)n |
Simple_repeat |
| scaffold17372 |
70177 |
70289 |
+ |
RS17006 |
Unspecified |
| scaffold17372 |
70516 |
70555 |
+ |
GA-rich |
Low_complexity |
| scaffold17372 |
71308 |
71348 |
+ |
(AATT)n |
Simple_repeat |
| scaffold17372 |
71461 |
71799 |
+ |
RS14142 |
Unspecified |
| scaffold17372 |
72214 |
72352 |
+ |
RS18314 |
Unspecified |
| scaffold17372 |
74609 |
74636 |
+ |
(CTT)n |
Simple_repeat |
| scaffold17372 |
75373 |
75413 |
+ |
GA-rich |
Low_complexity |
| scaffold17372 |
75551 |
75588 |
+ |
(ATGATGA)n |
Simple_repeat |
| scaffold17372 |
75846 |
76250 |
+ |
RS2208 |
Unspecified |
| scaffold17372 |
76280 |
76403 |
- |
PL469 |
Unspecified |
| scaffold17372 |
76912 |
76972 |
+ |
(ATTTAC)n |
Simple_repeat |
| scaffold17372 |
78171 |
78331 |
- |
PL21 |
Unspecified |
| scaffold17372 |
79159 |
79314 |
- |
RS57 |
Unspecified |
| scaffold17372 |
79257 |
79321 |
- |
RS215 |
Unspecified |
| scaffold17372 |
79972 |
80006 |
+ |
(TTTATA)n |
Simple_repeat |
| scaffold17372 |
80515 |
80584 |
+ |
(TAT)n |
Simple_repeat |
| scaffold17372 |
80925 |
80966 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
81870 |
81920 |
+ |
(GTAATTT)n |
Simple_repeat |
| scaffold17372 |
82080 |
82102 |
+ |
(TAT)n |
Simple_repeat |
| scaffold17372 |
82330 |
82362 |
+ |
(TTA)n |
Simple_repeat |
| scaffold17372 |
83378 |
83436 |
+ |
(TACTGT)n |
Simple_repeat |
| scaffold17372 |
83465 |
83526 |
+ |
GA-rich |
Low_complexity |
| scaffold17372 |
84234 |
84333 |
- |
RS17877 |
Unspecified |
| scaffold17372 |
84478 |
84524 |
+ |
A-rich |
Low_complexity |
| scaffold17372 |
87227 |
87402 |
+ |
RS14810 |
Unspecified |
| scaffold17372 |
87537 |
87596 |
+ |
A-rich |
Low_complexity |
| scaffold17372 |
89181 |
89356 |
+ |
RS14810 |
Unspecified |
| scaffold17372 |
89620 |
89668 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold17372 |
89802 |
89818 |
+ |
(A)n |
Simple_repeat |
| scaffold17372 |
92097 |
92126 |
+ |
(TGTT)n |
Simple_repeat |
| scaffold17372 |
92616 |
92635 |
+ |
(CAA)n |
Simple_repeat |
| scaffold17372 |
93407 |
93425 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
94341 |
94408 |
+ |
A-rich |
Low_complexity |
| scaffold17372 |
95787 |
95918 |
+ |
RS7640 |
Unspecified |
| scaffold17372 |
95914 |
95962 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold17372 |
97035 |
97202 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold17372 |
97162 |
97202 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold17372 |
98010 |
98291 |
- |
RS16621 |
Unspecified |
| scaffold17372 |
98292 |
99943 |
- |
Copia-16_CP-I |
LTR/Copia |
| scaffold17372 |
100264 |
101124 |
- |
Copia-16_CP-I |
LTR/Copia |
| scaffold17372 |
102116 |
102244 |
- |
Copia-16_CP-I |
LTR/Copia |
| scaffold17372 |
102849 |
103033 |
+ |
RS5593 |
Unspecified |
| scaffold17372 |
103038 |
103373 |
- |
RS16621 |
Unspecified |
| scaffold17372 |
105185 |
105420 |
- |
PL700 |
Unspecified |
| scaffold17372 |
105764 |
106268 |
- |
PL622 |
Unspecified |
| scaffold17372 |
106678 |
106706 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
106708 |
107094 |
- |
RS29 |
Unspecified |
| scaffold17372 |
107508 |
107537 |
+ |
(TA)n |
Simple_repeat |
| scaffold17372 |
108951 |
109080 |
+ |
RS992 |
Unspecified |
| scaffold17372 |
109220 |
109414 |
+ |
RS63 |
Unspecified |
| scaffold17372 |
109416 |
109786 |
+ |
RS1076 |
Unspecified |
| scaffold17372 |
110544 |
110596 |
+ |
(CCA)n |
Simple_repeat |
| scaffold17372 |
110859 |
111475 |
- |
PL883 |
Unspecified |
| scaffold17372 |
111172 |
111601 |
+ |
RS7618 |
Unspecified |
| scaffold17372 |
111602 |
111698 |
+ |
RS7618 |
Unspecified |
| scaffold17372 |
111889 |
112077 |
- |
RS6304 |
Unspecified |
| scaffold17372 |
112135 |
112164 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
112307 |
112482 |
- |
RS4359 |
Unspecified |
| scaffold17372 |
112403 |
113017 |
+ |
RS1868 |
Unspecified |
| scaffold17372 |
113157 |
113292 |
- |
RS13405 |
Unspecified |
| scaffold17372 |
113469 |
113597 |
+ |
PL23 |
Unspecified |
| scaffold17372 |
113796 |
113830 |
+ |
(CTTTTG)n |
Simple_repeat |
| scaffold17372 |
114174 |
114444 |
- |
RS356 |
Unspecified |
| scaffold17372 |
115101 |
115166 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
| scaffold17372 |
115290 |
115476 |
- |
RS518 |
Unspecified |
| scaffold17372 |
115521 |
115618 |
+ |
Copia-75_ST-I |
LTR/Copia |
| scaffold17372 |
115674 |
115789 |
- |
RS518 |
Unspecified |
| scaffold17372 |
115813 |
115852 |
+ |
(TTA)n |
Simple_repeat |
| scaffold17372 |
117218 |
117250 |
+ |
(TA)n |
Simple_repeat |
| scaffold17372 |
118130 |
118153 |
+ |
(CCA)n |
Simple_repeat |
| scaffold17372 |
118755 |
118778 |
+ |
(A)n |
Simple_repeat |
| scaffold17372 |
119412 |
119522 |
+ |
(ATA)n |
Simple_repeat |
| scaffold17372 |
119531 |
119792 |
- |
RS356 |
Unspecified |
| scaffold17372 |
119920 |
120137 |
+ |
RS3135 |
Unspecified |
| scaffold17372 |
120141 |
121327 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold17372 |
121350 |
121392 |
+ |
(AAGTTATCTG)n |
Simple_repeat |
| scaffold17372 |
121559 |
121646 |
+ |
(TT)n |
Simple_repeat |
| scaffold17372 |
123423 |
123477 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
125785 |
125879 |
+ |
RS356 |
Unspecified |
| scaffold17372 |
125881 |
126138 |
+ |
RS109 |
Unspecified |
| scaffold17372 |
126137 |
126302 |
+ |
RS356 |
Unspecified |
| scaffold17372 |
126902 |
126979 |
- |
RS6506 |
Unspecified |
| scaffold17372 |
126967 |
127048 |
- |
RS6506 |
Unspecified |
| scaffold17372 |
127089 |
127546 |
+ |
PL567 |
Unspecified |
| scaffold17372 |
128398 |
128551 |
- |
RS145 |
Unspecified |
| scaffold17372 |
129144 |
129194 |
+ |
A-rich |
Low_complexity |
| scaffold17372 |
129606 |
129661 |
+ |
(AATATC)n |
Simple_repeat |
| scaffold17372 |
130490 |
130550 |
+ |
(GATA)n |
Simple_repeat |
| scaffold17372 |
134424 |
134491 |
+ |
(A)n |
Simple_repeat |
| scaffold17372 |
135048 |
135191 |
+ |
(CAC)n |
Simple_repeat |
| scaffold17372 |
135195 |
135318 |
+ |
RS3100 |
Unspecified |
| scaffold17372 |
135457 |
135605 |
- |
RS8663 |
Unspecified |
| scaffold17372 |
135489 |
135742 |
- |
RS7367 |
Unspecified |
| scaffold17372 |
135745 |
135812 |
+ |
(TGA)n |
Simple_repeat |
| scaffold17372 |
136261 |
136518 |
+ |
RS123 |
Unspecified |
| scaffold17372 |
137075 |
137218 |
+ |
(CAC)n |
Simple_repeat |
| scaffold17372 |
137222 |
137345 |
+ |
RS3100 |
Unspecified |
| scaffold17372 |
137383 |
137461 |
- |
RS8663 |
Unspecified |
| scaffold17372 |
137484 |
137632 |
- |
RS8663 |
Unspecified |
| scaffold17372 |
137516 |
137769 |
- |
RS7367 |
Unspecified |
| scaffold17372 |
137772 |
137817 |
+ |
(TGA)n |
Simple_repeat |
| scaffold17372 |
137872 |
138022 |
- |
PL474 |
Unspecified |
| scaffold17372 |
138245 |
138570 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold17372 |
139719 |
141035 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold17372 |
141042 |
143172 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold17372 |
143250 |
143275 |
+ |
(T)n |
Simple_repeat |
| scaffold17372 |
143379 |
143405 |
+ |
(T)n |
Simple_repeat |