scaffold1822 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold1822 |
132 |
215 |
- |
Gypsy-13_TA-I |
LTR/Gypsy |
| scaffold1822 |
1003 |
1260 |
+ |
(A)n |
Simple_repeat |
| scaffold1822 |
1203 |
1260 |
+ |
(A)n |
Simple_repeat |
| scaffold1822 |
2471 |
3087 |
+ |
PL229 |
Unspecified |
| scaffold1822 |
2580 |
3087 |
- |
PL487 |
Unspecified |
| scaffold1822 |
2640 |
3233 |
- |
PL862 |
Unspecified |
| scaffold1822 |
3126 |
3358 |
+ |
PL334 |
Unspecified |
| scaffold1822 |
3241 |
3718 |
+ |
PL350 |
Unspecified |
| scaffold1822 |
3761 |
3828 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold1822 |
4000 |
4427 |
- |
PL494 |
Unspecified |
| scaffold1822 |
4559 |
4589 |
+ |
GA-rich |
Low_complexity |
| scaffold1822 |
4688 |
4752 |
+ |
(TTG)n |
Simple_repeat |
| scaffold1822 |
5048 |
5100 |
+ |
A-rich |
Low_complexity |
| scaffold1822 |
5355 |
5396 |
+ |
(TTAGA)n |
Simple_repeat |
| scaffold1822 |
5654 |
5828 |
- |
GYPOT1_I-int |
LTR/Gypsy |
| scaffold1822 |
5845 |
7211 |
- |
GYPOT1_I-int |
LTR/Gypsy |
| scaffold1822 |
7244 |
7792 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold1822 |
8515 |
8564 |
+ |
(T)n |
Simple_repeat |
| scaffold1822 |
9092 |
9155 |
+ |
(ACAGTTA)n |
Simple_repeat |
| scaffold1822 |
10378 |
10427 |
+ |
(TGG)n |
Simple_repeat |
| scaffold1822 |
10554 |
10608 |
+ |
RS300 |
Unspecified |
| scaffold1822 |
10576 |
10628 |
- |
RS300 |
Unspecified |
| scaffold1822 |
10644 |
10981 |
+ |
PL17 |
Unspecified |
| scaffold1822 |
10984 |
11162 |
+ |
RS14 |
Unspecified |
| scaffold1822 |
11553 |
11584 |
+ |
(TAA)n |
Simple_repeat |
| scaffold1822 |
11765 |
11859 |
+ |
(TCAATCA)n |
Simple_repeat |
| scaffold1822 |
11765 |
11809 |
+ |
(TCAATCA)n |
Simple_repeat |
| scaffold1822 |
11802 |
11859 |
- |
RS570 |
Unspecified |
| scaffold1822 |
11858 |
12006 |
+ |
RS7703 |
Unspecified |
| scaffold1822 |
12049 |
12080 |
+ |
(AATAGA)n |
Simple_repeat |
| scaffold1822 |
12196 |
12234 |
+ |
(TCAATCA)n |
Simple_repeat |
| scaffold1822 |
12235 |
12260 |
+ |
(TCA)n |
Simple_repeat |
| scaffold1822 |
13339 |
13561 |
+ |
RS2906 |
Unspecified |
| scaffold1822 |
13402 |
13640 |
+ |
RS8989 |
Unspecified |
| scaffold1822 |
13932 |
14045 |
+ |
RS9858 |
Unspecified |
| scaffold1822 |
14646 |
14921 |
+ |
RS1315 |
Unspecified |
| scaffold1822 |
14990 |
15039 |
+ |
(CTATTTT)n |
Simple_repeat |
| scaffold1822 |
15040 |
15062 |
+ |
(T)n |
Simple_repeat |
| scaffold1822 |
15063 |
15068 |
+ |
(CTATTTT)n |
Simple_repeat |
| scaffold1822 |
15526 |
15540 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold1822 |
15541 |
15573 |
+ |
(T)n |
Simple_repeat |
| scaffold1822 |
15574 |
15579 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold1822 |
16605 |
16646 |
+ |
A-rich |
Low_complexity |
| scaffold1822 |
16979 |
17043 |
+ |
(ATACAA)n |
Simple_repeat |
| scaffold1822 |
17183 |
17205 |
+ |
(AT)n |
Simple_repeat |
| scaffold1822 |
17273 |
17326 |
+ |
(A)n |
Simple_repeat |
| scaffold1822 |
17891 |
17918 |
+ |
(TA)n |
Simple_repeat |
| scaffold1822 |
17927 |
18078 |
- |
RS300 |
Unspecified |
| scaffold1822 |
18324 |
18347 |
+ |
(AT)n |
Simple_repeat |
| scaffold1822 |
18390 |
18442 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold1822 |
19599 |
19643 |
+ |
(ACAG)n |
Simple_repeat |
| scaffold1822 |
20028 |
20148 |
+ |
SZ-25_LTR |
LTR/Copia |
| scaffold1822 |
20889 |
20958 |
+ |
(TAG)n |
Simple_repeat |
| scaffold1822 |
20959 |
21003 |
+ |
(TAGTAGA)n |
Simple_repeat |
| scaffold1822 |
21004 |
21010 |
+ |
(TAG)n |
Simple_repeat |
| scaffold1822 |
21170 |
21584 |
+ |
RS1834 |
Unspecified |
| scaffold1822 |
21617 |
21951 |
+ |
RS1034 |
Unspecified |
| scaffold1822 |
21981 |
22545 |
- |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold1822 |
22186 |
22545 |
- |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold1822 |
22672 |
22744 |
+ |
A-rich |
Low_complexity |
| scaffold1822 |
22864 |
22937 |
+ |
(AGT)n |
Simple_repeat |
| scaffold1822 |
23149 |
23420 |
+ |
RS1834 |
Unspecified |
| scaffold1822 |
23419 |
23785 |
+ |
RS14 |
Unspecified |
| scaffold1822 |
25611 |
26273 |
+ |
PL919 |
Unspecified |
| scaffold1822 |
25883 |
26324 |
- |
PL494 |
Unspecified |
| scaffold1822 |
26580 |
26647 |
+ |
(TTG)n |
Simple_repeat |
| scaffold1822 |
27027 |
27059 |
+ |
A-rich |
Low_complexity |
| scaffold1822 |
27758 |
27905 |
+ |
RS1834 |
Unspecified |
| scaffold1822 |
27804 |
27935 |
+ |
RS12363 |
Unspecified |
| scaffold1822 |
28252 |
28505 |
+ |
RS356 |
Unspecified |
| scaffold1822 |
30606 |
31023 |
- |
RS19 |
Unspecified |
| scaffold1822 |
32481 |
32543 |
+ |
RETROSAT5_I-int |
LTR/Gypsy |
| scaffold1822 |
32717 |
33311 |
- |
PL445 |
Unspecified |
| scaffold1822 |
33374 |
33426 |
+ |
(ATA)n |
Simple_repeat |
| scaffold1822 |
33801 |
34079 |
+ |
RS4686 |
Unspecified |
| scaffold1822 |
34154 |
34189 |
+ |
(TAA)n |
Simple_repeat |
| scaffold1822 |
34386 |
34865 |
- |
PL243 |
Unspecified |
| scaffold1822 |
34438 |
35018 |
+ |
PL936 |
Unspecified |
| scaffold1822 |
34612 |
35387 |
- |
RS1154 |
Unspecified |
| scaffold1822 |
35010 |
35434 |
- |
PL951 |
Unspecified |
| scaffold1822 |
36219 |
36363 |
+ |
RS1953 |
Unspecified |
| scaffold1822 |
36492 |
36522 |
+ |
(CACTA)n |
Simple_repeat |
| scaffold1822 |
36523 |
36550 |
+ |
(ACT)n |
Simple_repeat |
| scaffold1822 |
37478 |
37519 |
+ |
A-rich |
Low_complexity |
| scaffold1822 |
37538 |
38019 |
- |
PL350 |
Unspecified |
| scaffold1822 |
38058 |
38106 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold1822 |
38806 |
38983 |
+ |
(TAAGTA)n |
Simple_repeat |
| scaffold1822 |
39778 |
39897 |
- |
RS13 |
Unspecified |
| scaffold1822 |
39905 |
40262 |
+ |
Copia-22_BRa-I |
LTR/Copia |
| scaffold1822 |
40491 |
40511 |
+ |
(C)n |
Simple_repeat |
| scaffold1822 |
40667 |
41340 |
+ |
Copia-22_BRa-I |
LTR/Copia |
| scaffold1822 |
41454 |
41690 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold1822 |
41691 |
41715 |
+ |
(ACTCCG)n |
Simple_repeat |
| scaffold1822 |
41716 |
42083 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold1822 |
42135 |
42345 |
- |
RS2008 |
Unspecified |
| scaffold1822 |
42522 |
42558 |
+ |
(A)n |
Simple_repeat |
| scaffold1822 |
43258 |
43315 |
+ |
(ATTTC)n |
Simple_repeat |
| scaffold1822 |
44027 |
44297 |
- |
RS469 |
Unspecified |
| scaffold1822 |
44066 |
44331 |
- |
RS3106 |
Unspecified |
| scaffold1822 |
44392 |
44654 |
- |
RS1301 |
Unspecified |
| scaffold1822 |
44827 |
45627 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold1822 |
44863 |
44921 |
+ |
L1-10_GM |
LINE/L1 |
| scaffold1822 |
68659 |
69333 |
- |
Copia-92_ST-I |
LTR/Copia |