scaffold18357 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold18357 |
1 |
187 |
- |
RS480 |
Unspecified |
| scaffold18357 |
187 |
1123 |
+ |
PL875 |
Unspecified |
| scaffold18357 |
1207 |
1261 |
+ |
(GTTGGTT)n |
Simple_repeat |
| scaffold18357 |
1293 |
1346 |
+ |
(TTTTCGT)n |
Simple_repeat |
| scaffold18357 |
1842 |
1987 |
+ |
PL17 |
Unspecified |
| scaffold18357 |
1986 |
2102 |
- |
Copia-47_BRa-I |
LTR/Copia |
| scaffold18357 |
2096 |
2536 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold18357 |
2936 |
2970 |
+ |
(AAGACA)n |
Simple_repeat |
| scaffold18357 |
2939 |
3283 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold18357 |
2940 |
3265 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold18357 |
3313 |
3753 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold18357 |
3320 |
3741 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold18357 |
3863 |
3916 |
+ |
(AACTCAT)n |
Simple_repeat |
| scaffold18357 |
3966 |
4068 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
4138 |
4698 |
- |
hAT-19_Mad |
DNA/hAT-Tag1 |
| scaffold18357 |
5230 |
5268 |
+ |
(GTTCT)n |
Simple_repeat |
| scaffold18357 |
5371 |
5482 |
- |
hAT-3_STu |
DNA/hAT-Tag1 |
| scaffold18357 |
5545 |
6532 |
- |
hAT-19_Mad |
DNA/hAT-Tag1 |
| scaffold18357 |
6974 |
7071 |
+ |
(AAC)n |
Simple_repeat |
| scaffold18357 |
7072 |
7104 |
+ |
(TAA)n |
Simple_repeat |
| scaffold18357 |
7232 |
7264 |
+ |
(TC)n |
Simple_repeat |
| scaffold18357 |
7998 |
8020 |
+ |
(A)n |
Simple_repeat |
| scaffold18357 |
9579 |
9634 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
9579 |
9847 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
9609 |
9847 |
+ |
RS4066 |
Unspecified |
| scaffold18357 |
10876 |
10910 |
+ |
(TC)n |
Simple_repeat |
| scaffold18357 |
11125 |
11189 |
+ |
(AAT)n |
Simple_repeat |
| scaffold18357 |
11316 |
11366 |
+ |
(GGCGGA)n |
Simple_repeat |
| scaffold18357 |
11404 |
11721 |
- |
RS1070 |
Unspecified |
| scaffold18357 |
11722 |
12460 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold18357 |
14127 |
14871 |
- |
RS265 |
Unspecified |
| scaffold18357 |
14937 |
14992 |
+ |
L1-20_CPa |
LINE/L1 |
| scaffold18357 |
16097 |
16216 |
- |
hAT-8_SBi |
DNA/hAT-Tip100 |
| scaffold18357 |
16671 |
16694 |
+ |
(A)n |
Simple_repeat |
| scaffold18357 |
17127 |
17170 |
+ |
(T)n |
Simple_repeat |
| scaffold18357 |
17652 |
17680 |
+ |
(CAATAA)n |
Simple_repeat |
| scaffold18357 |
17681 |
17707 |
+ |
(CAA)n |
Simple_repeat |
| scaffold18357 |
17708 |
17729 |
+ |
(CAATAA)n |
Simple_repeat |
| scaffold18357 |
18058 |
18097 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold18357 |
18396 |
18434 |
+ |
(TTTATG)n |
Simple_repeat |
| scaffold18357 |
18668 |
18709 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold18357 |
19337 |
19369 |
+ |
(AT)n |
Simple_repeat |
| scaffold18357 |
20030 |
20214 |
+ |
RS18243 |
Unspecified |
| scaffold18357 |
20421 |
20439 |
+ |
(T)n |
Simple_repeat |
| scaffold18357 |
22430 |
23315 |
- |
SHALINE10_MT |
LINE/L1 |
| scaffold18357 |
28888 |
28928 |
+ |
(A)n |
Simple_repeat |
| scaffold18357 |
28997 |
29037 |
+ |
(A)n |
Simple_repeat |
| scaffold18357 |
29404 |
29438 |
+ |
(ATTAAT)n |
Simple_repeat |
| scaffold18357 |
29746 |
29856 |
- |
RS9719 |
Unspecified |
| scaffold18357 |
30883 |
30915 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold18357 |
30916 |
30937 |
+ |
(ATA)n |
Simple_repeat |
| scaffold18357 |
31887 |
31929 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
32305 |
32352 |
+ |
(TAA)n |
Simple_repeat |
| scaffold18357 |
32432 |
32494 |
+ |
(ATC)n |
Simple_repeat |
| scaffold18357 |
32852 |
33261 |
+ |
RS956 |
Unspecified |
| scaffold18357 |
33109 |
33319 |
- |
RS176 |
Unspecified |
| scaffold18357 |
34392 |
34880 |
+ |
RS307 |
Unspecified |
| scaffold18357 |
35146 |
35211 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold18357 |
36809 |
36839 |
+ |
(TAA)n |
Simple_repeat |
| scaffold18357 |
36809 |
37097 |
+ |
(TAA)n |
Simple_repeat |
| scaffold18357 |
36835 |
37097 |
+ |
RS288 |
Unspecified |
| scaffold18357 |
37098 |
37208 |
- |
RS9719 |
Unspecified |
| scaffold18357 |
38127 |
38163 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
38799 |
38867 |
+ |
(AGATAT)n |
Simple_repeat |
| scaffold18357 |
38799 |
39238 |
+ |
(AGATAT)n |
Simple_repeat |
| scaffold18357 |
38858 |
39238 |
- |
PL753 |
Unspecified |
| scaffold18357 |
39495 |
39579 |
+ |
RS10981 |
Unspecified |
| scaffold18357 |
39824 |
39856 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
40268 |
40444 |
+ |
RS13061 |
Unspecified |
| scaffold18357 |
40536 |
40581 |
+ |
(TCACC)n |
Simple_repeat |
| scaffold18357 |
40720 |
40749 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold18357 |
40837 |
41238 |
- |
PL223 |
Unspecified |
| scaffold18357 |
41286 |
41310 |
+ |
(A)n |
Simple_repeat |
| scaffold18357 |
41362 |
41424 |
+ |
(ATC)n |
Simple_repeat |
| scaffold18357 |
41666 |
41695 |
+ |
(TTG)n |
Simple_repeat |
| scaffold18357 |
42938 |
42995 |
+ |
(TCCCC)n |
Simple_repeat |
| scaffold18357 |
43073 |
43101 |
+ |
(GGAAAG)n |
Simple_repeat |
| scaffold18357 |
43514 |
43549 |
+ |
(TCCCC)n |
Simple_repeat |
| scaffold18357 |
43688 |
43732 |
+ |
(TAAGCTT)n |
Simple_repeat |
| scaffold18357 |
45136 |
45302 |
+ |
RS179 |
Unspecified |
| scaffold18357 |
51720 |
51770 |
- |
Gypsy5-PTR_I-int |
LTR/Gypsy |
| scaffold18357 |
51783 |
51922 |
+ |
PL443 |
Unspecified |
| scaffold18357 |
51917 |
52333 |
+ |
RS386 |
Unspecified |
| scaffold18357 |
52839 |
52876 |
+ |
(TTTCGTT)n |
Simple_repeat |
| scaffold18357 |
53607 |
53698 |
+ |
(ATA)n |
Simple_repeat |
| scaffold18357 |
54857 |
54894 |
+ |
(GAAGAT)n |
Simple_repeat |
| scaffold18357 |
54912 |
55180 |
+ |
RS513 |
Unspecified |
| scaffold18357 |
55223 |
55335 |
+ |
RS94 |
Unspecified |
| scaffold18357 |
58597 |
58844 |
+ |
RS231 |
Unspecified |
| scaffold18357 |
59235 |
59313 |
+ |
RS3177 |
Unspecified |
| scaffold18357 |
59250 |
59357 |
+ |
RS11649 |
Unspecified |
| scaffold18357 |
59581 |
59721 |
+ |
(TACA)n |
Simple_repeat |
| scaffold18357 |
63179 |
63233 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold18357 |
63262 |
63536 |
- |
RS1963 |
Unspecified |
| scaffold18357 |
63306 |
63840 |
- |
RS266 |
Unspecified |
| scaffold18357 |
64562 |
64818 |
+ |
RS96 |
Unspecified |
| scaffold18357 |
65073 |
65116 |
+ |
(AACATG)n |
Simple_repeat |
| scaffold18357 |
65237 |
65268 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
65518 |
65541 |
+ |
(CA)n |
Simple_repeat |
| scaffold18357 |
65549 |
65638 |
- |
RS1878 |
Unspecified |
| scaffold18357 |
66306 |
66341 |
+ |
(CAATTT)n |
Simple_repeat |
| scaffold18357 |
67162 |
67197 |
+ |
(ACCGG)n |
Simple_repeat |
| scaffold18357 |
67902 |
67934 |
+ |
(GGTCC)n |
Simple_repeat |
| scaffold18357 |
68267 |
68298 |
+ |
(T)n |
Simple_repeat |
| scaffold18357 |
69823 |
69872 |
+ |
(GTTTA)n |
Simple_repeat |
| scaffold18357 |
69901 |
69934 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold18357 |
70020 |
70107 |
+ |
RS6083 |
Unspecified |
| scaffold18357 |
70353 |
70391 |
+ |
(T)n |
Simple_repeat |
| scaffold18357 |
71468 |
71631 |
- |
RS530 |
Unspecified |
| scaffold18357 |
72158 |
72333 |
+ |
RS509 |
Unspecified |
| scaffold18357 |
72184 |
72333 |
+ |
RS2719 |
Unspecified |
| scaffold18357 |
73217 |
73440 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold18357 |
76552 |
76809 |
+ |
RS3219 |
Unspecified |
| scaffold18357 |
76960 |
76989 |
+ |
(TAAA)n |
Simple_repeat |
| scaffold18357 |
77085 |
77102 |
+ |
(A)n |
Simple_repeat |
| scaffold18357 |
77282 |
77314 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
77405 |
77431 |
+ |
(T)n |
Simple_repeat |
| scaffold18357 |
77445 |
77491 |
+ |
(ATATACT)n |
Simple_repeat |
| scaffold18357 |
78339 |
78407 |
+ |
RS2429 |
Unspecified |
| scaffold18357 |
78710 |
78763 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold18357 |
79425 |
79511 |
+ |
RS2429 |
Unspecified |
| scaffold18357 |
79507 |
79955 |
+ |
RS1480 |
Unspecified |
| scaffold18357 |
79963 |
80056 |
- |
RS803 |
Unspecified |
| scaffold18357 |
80758 |
80791 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
80986 |
81027 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
81138 |
81240 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold18357 |
82240 |
82331 |
+ |
EnSpm-34_SBi |
DNA/CMC-EnSpm |
| scaffold18357 |
82253 |
82342 |
+ |
DNA3-1_STu |
DNA/PIF-Harbinger |
| scaffold18357 |
82646 |
82710 |
+ |
(TTTCTA)n |
Simple_repeat |
| scaffold18357 |
83469 |
83561 |
+ |
RS18252 |
Unspecified |
| scaffold18357 |
83785 |
84089 |
+ |
RS873 |
Unspecified |
| scaffold18357 |
83787 |
84175 |
+ |
RS29 |
Unspecified |
| scaffold18357 |
84321 |
84408 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold18357 |
84582 |
84809 |
- |
RS2309 |
Unspecified |
| scaffold18357 |
84810 |
85038 |
- |
Copia-3_SL-I |
LTR/Copia |
| scaffold18357 |
86004 |
86046 |
+ |
(TTAATCT)n |
Simple_repeat |
| scaffold18357 |
86648 |
87059 |
- |
RS716 |
Unspecified |
| scaffold18357 |
87185 |
87240 |
+ |
(ATA)n |
Simple_repeat |
| scaffold18357 |
87472 |
87635 |
+ |
RS5984 |
Unspecified |
| scaffold18357 |
87547 |
87732 |
- |
PL697 |
Unspecified |
| scaffold18357 |
88037 |
88456 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold18357 |
88039 |
88225 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold18357 |
88765 |
88830 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
88986 |
89064 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
89278 |
89329 |
+ |
(GCA)n |
Simple_repeat |
| scaffold18357 |
90003 |
90023 |
+ |
(A)n |
Simple_repeat |
| scaffold18357 |
90209 |
90372 |
+ |
RS179 |
Unspecified |
| scaffold18357 |
91709 |
91733 |
+ |
(CAT)n |
Simple_repeat |
| scaffold18357 |
92820 |
92898 |
+ |
(TGACGG)n |
Simple_repeat |
| scaffold18357 |
93082 |
93226 |
- |
RS1375 |
Unspecified |
| scaffold18357 |
94299 |
94524 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold18357 |
94719 |
94925 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold18357 |
95138 |
95175 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
95273 |
95337 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold18357 |
95693 |
95702 |
+ |
(AATCA)n |
Simple_repeat |
| scaffold18357 |
95703 |
95761 |
+ |
(AATA)n |
Simple_repeat |
| scaffold18357 |
95771 |
95861 |
- |
RS1943 |
Unspecified |
| scaffold18357 |
95860 |
96432 |
+ |
(A)n |
Simple_repeat |
| scaffold18357 |
96394 |
96432 |
+ |
(A)n |
Simple_repeat |
| scaffold18357 |
96561 |
96669 |
- |
RS131 |
Unspecified |
| scaffold18357 |
96839 |
96868 |
+ |
G-rich |
Low_complexity |
| scaffold18357 |
96951 |
97344 |
- |
RS1943 |
Unspecified |
| scaffold18357 |
97192 |
97429 |
- |
RS1582 |
Unspecified |
| scaffold18357 |
97338 |
97596 |
- |
RS8256 |
Unspecified |
| scaffold18357 |
97631 |
97805 |
+ |
RS2663 |
Unspecified |
| scaffold18357 |
97856 |
97945 |
+ |
PL289 |
Unspecified |
| scaffold18357 |
97856 |
97967 |
+ |
PL296 |
Unspecified |
| scaffold18357 |
97944 |
98306 |
- |
PL477 |
Unspecified |
| scaffold18357 |
98307 |
98353 |
+ |
GA-rich |
Low_complexity |
| scaffold18357 |
98426 |
98581 |
+ |
RS14624 |
Unspecified |
| scaffold18357 |
98832 |
98885 |
+ |
(CCATCAT)n |
Simple_repeat |
| scaffold18357 |
100146 |
100496 |
- |
PL171 |
Unspecified |
| scaffold18357 |
100714 |
100901 |
- |
RS533 |
Unspecified |
| scaffold18357 |
100906 |
101041 |
- |
PL5 |
Unspecified |
| scaffold18357 |
102610 |
102647 |
+ |
(A)n |
Simple_repeat |
| scaffold18357 |
103793 |
103800 |
+ |
(ATT)n |
Simple_repeat |
| scaffold18357 |
103801 |
103833 |
+ |
(TATT)n |
Simple_repeat |
| scaffold18357 |
103945 |
104117 |
+ |
RS1056 |
Unspecified |
| scaffold18357 |
104095 |
104152 |
+ |
RS958 |
Unspecified |
| scaffold18357 |
104118 |
104175 |
- |
RS958 |
Unspecified |
| scaffold18357 |
104153 |
104213 |
- |
RS1056 |
Unspecified |
| scaffold18357 |
104163 |
104424 |
+ |
RS958 |
Unspecified |
| scaffold18357 |
104465 |
104526 |
+ |
(ATTATA)n |
Simple_repeat |
| scaffold18357 |
104582 |
104881 |
+ |
RS458 |
Unspecified |
| scaffold18357 |
104859 |
104989 |
- |
RS877 |
Unspecified |
| scaffold18357 |
104866 |
104979 |
+ |
RS4864 |
Unspecified |
| scaffold18357 |
104881 |
105106 |
- |
RS1919 |
Unspecified |
| scaffold18357 |
105074 |
105724 |
+ |
RS458 |
Unspecified |
| scaffold18357 |
105846 |
105876 |
+ |
(T)n |
Simple_repeat |
| scaffold18357 |
108051 |
108106 |
+ |
(TTTTGTA)n |
Simple_repeat |
| scaffold18357 |
108832 |
108872 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
111529 |
111719 |
- |
RS810 |
Unspecified |
| scaffold18357 |
111721 |
111882 |
+ |
RS796 |
Unspecified |
| scaffold18357 |
112437 |
112464 |
+ |
(AT)n |
Simple_repeat |
| scaffold18357 |
112648 |
112787 |
- |
RS10811 |
Unspecified |
| scaffold18357 |
112870 |
112924 |
+ |
(TTAATAA)n |
Simple_repeat |
| scaffold18357 |
113057 |
113174 |
- |
RS3193 |
Unspecified |
| scaffold18357 |
113703 |
114068 |
- |
RS8 |
Unspecified |
| scaffold18357 |
115825 |
116498 |
- |
PL126 |
Unspecified |
| scaffold18357 |
117125 |
117159 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
117299 |
117357 |
+ |
(TAATAA)n |
Simple_repeat |
| scaffold18357 |
117358 |
117389 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
118178 |
119036 |
+ |
(AT)n |
Simple_repeat |
| scaffold18357 |
118178 |
118204 |
+ |
(AT)n |
Simple_repeat |
| scaffold18357 |
118196 |
119036 |
- |
PL169 |
Unspecified |
| scaffold18357 |
119034 |
119129 |
+ |
RS16382 |
Unspecified |
| scaffold18357 |
119125 |
119226 |
+ |
PL340 |
Unspecified |
| scaffold18357 |
119221 |
119381 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold18357 |
119741 |
120160 |
- |
PL936 |
Unspecified |
| scaffold18357 |
120422 |
120517 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold18357 |
120565 |
120691 |
- |
RS1941 |
Unspecified |
| scaffold18357 |
120565 |
120707 |
+ |
RS658 |
Unspecified |
| scaffold18357 |
121078 |
121113 |
- |
Arnold2 |
DNA/MULE-MuDR |
| scaffold18357 |
121159 |
121283 |
+ |
RS235 |
Unspecified |
| scaffold18357 |
121199 |
121298 |
- |
PL255 |
Unspecified |
| scaffold18357 |
121378 |
121426 |
+ |
(CAC)n |
Simple_repeat |
| scaffold18357 |
121435 |
121553 |
+ |
DNA3-11_Mad |
DNA/PIF-Harbinger |
| scaffold18357 |
122136 |
122266 |
- |
RS1678 |
Unspecified |
| scaffold18357 |
123805 |
124008 |
- |
RS86 |
Unspecified |
| scaffold18357 |
124006 |
124144 |
- |
PL688 |
Unspecified |
| scaffold18357 |
124456 |
124513 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold18357 |
127050 |
127087 |
+ |
(T)n |
Simple_repeat |
| scaffold18357 |
128320 |
128379 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
128913 |
128981 |
+ |
A-rich |
Low_complexity |
| scaffold18357 |
129286 |
129427 |
- |
RS1090 |
Unspecified |
| scaffold18357 |
129696 |
129772 |
- |
Copia-35_GM-I |
LTR/Copia |
| scaffold18357 |
129773 |
129833 |
+ |
(AAT)n |
Simple_repeat |
| scaffold18357 |
129834 |
130216 |
- |
Copia-35_GM-I |
LTR/Copia |