scaffold18676 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold18676 |
2 |
161 |
- |
RS3094 |
Unspecified |
| scaffold18676 |
134 |
327 |
- |
RS3094 |
Unspecified |
| scaffold18676 |
258 |
443 |
- |
RS3094 |
Unspecified |
| scaffold18676 |
320 |
503 |
- |
RS3094 |
Unspecified |
| scaffold18676 |
1498 |
2133 |
+ |
RS424 |
Unspecified |
| scaffold18676 |
2255 |
5110 |
+ |
Copia-4_GM-I |
LTR/Copia |
| scaffold18676 |
5114 |
5818 |
+ |
RS424 |
Unspecified |
| scaffold18676 |
5940 |
6816 |
+ |
Copia-4_GM-I |
LTR/Copia |
| scaffold18676 |
6581 |
6704 |
+ |
RS2075 |
Unspecified |
| scaffold18676 |
6810 |
6944 |
+ |
Copia-4_GM-I |
LTR/Copia |
| scaffold18676 |
7412 |
7753 |
- |
RS1250 |
Unspecified |
| scaffold18676 |
7786 |
8366 |
+ |
RS1250 |
Unspecified |
| scaffold18676 |
8402 |
8418 |
+ |
(A)n |
Simple_repeat |
| scaffold18676 |
8533 |
8606 |
+ |
(CGAACC)n |
Simple_repeat |
| scaffold18676 |
8746 |
9016 |
+ |
RS1 |
Unspecified |
| scaffold18676 |
9066 |
9089 |
+ |
(A)n |
Simple_repeat |
| scaffold18676 |
9911 |
9927 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold18676 |
9928 |
9967 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
10158 |
10186 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
12290 |
12322 |
+ |
(ATCGG)n |
Simple_repeat |
| scaffold18676 |
12870 |
13305 |
- |
RS1508 |
Unspecified |
| scaffold18676 |
13674 |
13695 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
13788 |
14001 |
- |
RS9843 |
Unspecified |
| scaffold18676 |
16320 |
16421 |
- |
RS1 |
Unspecified |
| scaffold18676 |
16761 |
16909 |
- |
RS334 |
Unspecified |
| scaffold18676 |
16806 |
17405 |
- |
RS589 |
Unspecified |
| scaffold18676 |
17697 |
17726 |
+ |
(TAGA)n |
Simple_repeat |
| scaffold18676 |
18283 |
18300 |
+ |
(A)n |
Simple_repeat |
| scaffold18676 |
18451 |
18490 |
+ |
(TATTAA)n |
Simple_repeat |
| scaffold18676 |
18947 |
19099 |
- |
RS152 |
Unspecified |
| scaffold18676 |
19611 |
19976 |
+ |
RS2021 |
Unspecified |
| scaffold18676 |
20331 |
20362 |
+ |
(TA)n |
Simple_repeat |
| scaffold18676 |
20455 |
20484 |
+ |
(A)n |
Simple_repeat |
| scaffold18676 |
20455 |
20627 |
+ |
(A)n |
Simple_repeat |
| scaffold18676 |
20472 |
20627 |
- |
RS1331 |
Unspecified |
| scaffold18676 |
20593 |
20688 |
- |
RS1331 |
Unspecified |
| scaffold18676 |
20860 |
21158 |
+ |
RS513 |
Unspecified |
| scaffold18676 |
21219 |
21446 |
+ |
RS16888 |
Unspecified |
| scaffold18676 |
21470 |
21524 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
21698 |
21755 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
22024 |
22370 |
- |
RS554 |
Unspecified |
| scaffold18676 |
23444 |
23775 |
+ |
RS1277 |
Unspecified |
| scaffold18676 |
24027 |
24062 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
24336 |
24580 |
- |
RS4 |
Unspecified |
| scaffold18676 |
25674 |
25749 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold18676 |
25783 |
25872 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
27300 |
27452 |
- |
PL415 |
Unspecified |
| scaffold18676 |
27951 |
28272 |
+ |
RS780 |
Unspecified |
| scaffold18676 |
28365 |
28538 |
+ |
RS15975 |
Unspecified |
| scaffold18676 |
28758 |
28808 |
+ |
(CATTAAT)n |
Simple_repeat |
| scaffold18676 |
28872 |
29060 |
+ |
RS18166 |
Unspecified |
| scaffold18676 |
29063 |
29197 |
+ |
RS16828 |
Unspecified |
| scaffold18676 |
29617 |
29656 |
+ |
RS209 |
Unspecified |
| scaffold18676 |
29659 |
29850 |
+ |
RS780 |
Unspecified |
| scaffold18676 |
29947 |
30120 |
+ |
RS15975 |
Unspecified |
| scaffold18676 |
30357 |
30388 |
+ |
(ATT)n |
Simple_repeat |
| scaffold18676 |
30472 |
30660 |
+ |
RS18166 |
Unspecified |
| scaffold18676 |
30663 |
30797 |
+ |
RS16828 |
Unspecified |
| scaffold18676 |
31217 |
31402 |
+ |
RS209 |
Unspecified |
| scaffold18676 |
31625 |
31897 |
+ |
RS342 |
Unspecified |
| scaffold18676 |
31959 |
32157 |
- |
RS915 |
Unspecified |
| scaffold18676 |
32785 |
32927 |
+ |
RS897 |
Unspecified |
| scaffold18676 |
33048 |
33239 |
- |
RS324 |
Unspecified |
| scaffold18676 |
33433 |
33454 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold18676 |
34229 |
34289 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
34263 |
34299 |
+ |
(ATTCTAA)n |
Simple_repeat |
| scaffold18676 |
34383 |
34914 |
- |
PL572 |
Unspecified |
| scaffold18676 |
35266 |
35353 |
+ |
(ATA)n |
Simple_repeat |
| scaffold18676 |
36428 |
36451 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
37015 |
37062 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
37063 |
37086 |
+ |
(A)n |
Simple_repeat |
| scaffold18676 |
37766 |
37792 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
38128 |
38204 |
+ |
(TAATTAT)n |
Simple_repeat |
| scaffold18676 |
39217 |
39276 |
+ |
RS18111 |
Unspecified |
| scaffold18676 |
39231 |
39330 |
- |
RS16382 |
Unspecified |
| scaffold18676 |
41898 |
42076 |
+ |
PL438 |
Unspecified |
| scaffold18676 |
42110 |
42316 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold18676 |
42360 |
42623 |
+ |
RS356 |
Unspecified |
| scaffold18676 |
42766 |
42828 |
- |
PL688 |
Unspecified |
| scaffold18676 |
42991 |
43079 |
- |
PL276 |
Unspecified |
| scaffold18676 |
43150 |
43248 |
- |
PL508 |
Unspecified |
| scaffold18676 |
43336 |
43687 |
- |
PL304 |
Unspecified |
| scaffold18676 |
43959 |
43985 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
44647 |
45027 |
- |
RS1237 |
Unspecified |
| scaffold18676 |
47585 |
47625 |
+ |
(TAA)n |
Simple_repeat |
| scaffold18676 |
48070 |
48164 |
- |
RS16382 |
Unspecified |
| scaffold18676 |
48290 |
48385 |
+ |
RS3146 |
Unspecified |
| scaffold18676 |
48834 |
49032 |
+ |
RS757 |
Unspecified |
| scaffold18676 |
49396 |
49430 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold18676 |
49703 |
49762 |
+ |
(GCG)n |
Simple_repeat |
| scaffold18676 |
49955 |
49974 |
+ |
(TA)n |
Simple_repeat |
| scaffold18676 |
50012 |
50074 |
+ |
(TTTGT)n |
Simple_repeat |
| scaffold18676 |
54296 |
54348 |
+ |
(TA)n |
Simple_repeat |
| scaffold18676 |
54632 |
54864 |
- |
RS18 |
Unspecified |
| scaffold18676 |
55148 |
55210 |
+ |
PL68 |
Unspecified |
| scaffold18676 |
55772 |
55812 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
55994 |
56030 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
56361 |
56464 |
- |
RS84 |
Unspecified |
| scaffold18676 |
56452 |
56630 |
+ |
RS5762 |
Unspecified |
| scaffold18676 |
56506 |
56646 |
+ |
RS9530 |
Unspecified |
| scaffold18676 |
56659 |
56758 |
+ |
RS2941 |
Unspecified |
| scaffold18676 |
57003 |
57264 |
+ |
RS2941 |
Unspecified |
| scaffold18676 |
57266 |
57415 |
- |
RS4 |
Unspecified |
| scaffold18676 |
57562 |
57712 |
- |
RS178 |
Unspecified |
| scaffold18676 |
58557 |
58580 |
+ |
(GTT)n |
Simple_repeat |
| scaffold18676 |
59041 |
59066 |
+ |
(TG)n |
Simple_repeat |
| scaffold18676 |
60143 |
60191 |
+ |
(A)n |
Simple_repeat |
| scaffold18676 |
62322 |
62371 |
+ |
(CAT)n |
Simple_repeat |
| scaffold18676 |
63122 |
63215 |
+ |
RS167 |
Unspecified |
| scaffold18676 |
63351 |
63385 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
63841 |
63892 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
64019 |
64053 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
64667 |
64754 |
+ |
(CGAGCT)n |
Simple_repeat |
| scaffold18676 |
65693 |
65703 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold18676 |
65704 |
65721 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
65722 |
65728 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold18676 |
66321 |
66382 |
+ |
(TTTTTT)n |
Simple_repeat |
| scaffold18676 |
70101 |
70169 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold18676 |
70187 |
70237 |
+ |
(AGCTG)n |
Simple_repeat |
| scaffold18676 |
70238 |
70255 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold18676 |
72221 |
72244 |
+ |
(A)n |
Simple_repeat |
| scaffold18676 |
72561 |
72594 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
72631 |
72701 |
+ |
RS1112 |
Unspecified |
| scaffold18676 |
72715 |
72775 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
72981 |
73237 |
+ |
RS17600 |
Unspecified |
| scaffold18676 |
73392 |
73537 |
+ |
RS6556 |
Unspecified |
| scaffold18676 |
73588 |
74259 |
+ |
RS1767 |
Unspecified |
| scaffold18676 |
73781 |
75016 |
+ |
RS428 |
Unspecified |
| scaffold18676 |
75902 |
75946 |
+ |
(ATAC)n |
Simple_repeat |
| scaffold18676 |
75946 |
75976 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
77031 |
77287 |
- |
RS3535 |
Unspecified |
| scaffold18676 |
77308 |
77346 |
+ |
(ATCACTA)n |
Simple_repeat |
| scaffold18676 |
77336 |
77405 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold18676 |
78976 |
79001 |
+ |
(A)n |
Simple_repeat |
| scaffold18676 |
79312 |
79329 |
+ |
(ATGAAT)n |
Simple_repeat |
| scaffold18676 |
79330 |
79376 |
+ |
(TA)n |
Simple_repeat |
| scaffold18676 |
79377 |
79388 |
+ |
(ATGAAT)n |
Simple_repeat |
| scaffold18676 |
79451 |
79492 |
+ |
(ATTTTTTT)n |
Simple_repeat |
| scaffold18676 |
79678 |
79885 |
+ |
RS1220 |
Unspecified |
| scaffold18676 |
79870 |
80111 |
+ |
RS1347 |
Unspecified |
| scaffold18676 |
80442 |
80496 |
- |
TREP32 |
DNA/CMC-EnSpm |
| scaffold18676 |
80504 |
80652 |
+ |
RS2902 |
Unspecified |
| scaffold18676 |
80899 |
80928 |
+ |
(GAATG)n |
Simple_repeat |
| scaffold18676 |
80929 |
80966 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold18676 |
81264 |
81321 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
81359 |
81397 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
81790 |
81817 |
+ |
(TAT)n |
Simple_repeat |
| scaffold18676 |
82039 |
82142 |
+ |
RS750 |
Unspecified |
| scaffold18676 |
82931 |
83041 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold18676 |
86524 |
86550 |
+ |
(A)n |
Simple_repeat |
| scaffold18676 |
90610 |
90656 |
+ |
(AATT)n |
Simple_repeat |
| scaffold18676 |
90953 |
90989 |
+ |
(TTGAT)n |
Simple_repeat |
| scaffold18676 |
92077 |
92121 |
+ |
(TGA)n |
Simple_repeat |
| scaffold18676 |
95945 |
96057 |
+ |
Gypsy4-VV_I-int |
LTR/Gypsy |
| scaffold18676 |
96416 |
96465 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
97409 |
97468 |
+ |
(TGTAATAT)n |
Simple_repeat |
| scaffold18676 |
97747 |
97857 |
- |
RS285 |
Unspecified |
| scaffold18676 |
100282 |
100300 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
107351 |
107374 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
107895 |
107948 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold18676 |
110004 |
110155 |
- |
RS1857 |
Unspecified |
| scaffold18676 |
114785 |
114829 |
+ |
(ACAA)n |
Simple_repeat |
| scaffold18676 |
115319 |
115388 |
+ |
SINE2-1_PD |
SINE/tRNA-RTE |
| scaffold18676 |
117829 |
117881 |
- |
RTE1_MT |
LINE/RTE-BovB |
| scaffold18676 |
120166 |
120198 |
+ |
(AAACA)n |
Simple_repeat |
| scaffold18676 |
120252 |
120328 |
+ |
(ACAAC)n |
Simple_repeat |
| scaffold18676 |
120464 |
121044 |
- |
PL8 |
Unspecified |
| scaffold18676 |
121143 |
121173 |
+ |
(AAT)n |
Simple_repeat |
| scaffold18676 |
121513 |
121793 |
- |
PL734 |
Unspecified |
| scaffold18676 |
121834 |
122105 |
+ |
PL153 |
Unspecified |
| scaffold18676 |
122208 |
122262 |
+ |
(AATTTAT)n |
Simple_repeat |
| scaffold18676 |
122461 |
122654 |
+ |
RS5434 |
Unspecified |
| scaffold18676 |
123000 |
123153 |
- |
RS9813 |
Unspecified |
| scaffold18676 |
123792 |
123823 |
+ |
(TCT)n |
Simple_repeat |
| scaffold18676 |
123976 |
124259 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold18676 |
123976 |
124336 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold18676 |
124242 |
124336 |
- |
RS4532 |
Unspecified |
| scaffold18676 |
124639 |
125226 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold18676 |
124684 |
125035 |
+ |
Copia-86_GM-I |
LTR/Copia |
| scaffold18676 |
125383 |
125887 |
+ |
Copia-86_GM-I |
LTR/Copia |
| scaffold18676 |
125949 |
125985 |
+ |
(TCT)n |
Simple_repeat |
| scaffold18676 |
126284 |
126314 |
+ |
(GTTCA)n |
Simple_repeat |
| scaffold18676 |
126340 |
126428 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold18676 |
126524 |
126576 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
126632 |
126661 |
+ |
(A)n |
Simple_repeat |
| scaffold18676 |
126664 |
126704 |
+ |
(TCAATT)n |
Simple_repeat |
| scaffold18676 |
127119 |
127151 |
+ |
MSAT-1D_CR |
Satellite |
| scaffold18676 |
127152 |
127248 |
+ |
RTEX-1_CR |
LINE/RTE-X |
| scaffold18676 |
127249 |
127261 |
+ |
MSAT-1D_CR |
Satellite |
| scaffold18676 |
127262 |
127310 |
+ |
(CGA)n |
Simple_repeat |
| scaffold18676 |
127642 |
127835 |
+ |
Copia-64_PT-I |
LTR/Copia |
| scaffold18676 |
130347 |
130381 |
+ |
GA-rich |
Low_complexity |
| scaffold18676 |
130390 |
130665 |
- |
RS3048 |
Unspecified |
| scaffold18676 |
130560 |
130758 |
+ |
RS4668 |
Unspecified |
| scaffold18676 |
130855 |
130888 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold18676 |
130941 |
131146 |
- |
RS16652 |
Unspecified |
| scaffold18676 |
131147 |
131168 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
131262 |
131303 |
+ |
(TATATTT)n |
Simple_repeat |
| scaffold18676 |
135902 |
135932 |
+ |
A-rich |
Low_complexity |
| scaffold18676 |
136184 |
136207 |
+ |
(T)n |
Simple_repeat |
| scaffold18676 |
136208 |
136276 |
+ |
(TTTGA)n |
Simple_repeat |
| scaffold18676 |
136970 |
137004 |
- |
HADES_TA |
DNA/TcMar-Stowaway |
| scaffold18676 |
140501 |
140534 |
+ |
(ATCATT)n |
Simple_repeat |
| scaffold18676 |
140655 |
140674 |
+ |
(A)n |
Simple_repeat |
| scaffold18676 |
141132 |
141213 |
+ |
(TGT)n |
Simple_repeat |
| scaffold18676 |
143859 |
143890 |
+ |
(AAGACG)n |
Simple_repeat |
| scaffold18676 |
143957 |
145016 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold18676 |
145887 |
145967 |
+ |
(ACAAGC)n |
Simple_repeat |
| scaffold18676 |
148516 |
149356 |
- |
PL956 |
Unspecified |
| scaffold18676 |
149881 |
150163 |
+ |
PL947 |
Unspecified |
| scaffold18676 |
150165 |
150459 |
+ |
PL947 |
Unspecified |
| scaffold18676 |
150602 |
150785 |
+ |
Gypsy-26_VV-I |
LTR/Gypsy |
| scaffold18676 |
151374 |
151478 |
+ |
RS3670 |
Unspecified |
| scaffold18676 |
151569 |
151593 |
+ |
(AGA)n |
Simple_repeat |
| scaffold18676 |
151774 |
151885 |
+ |
(AATACAA)n |
Simple_repeat |
| scaffold18676 |
151997 |
152227 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold18676 |
152028 |
152221 |
+ |
Gypsy-29_VV-I |
LTR/Gypsy |