scaffold18790 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold18790 |
1 |
299 |
- |
RS363 |
Unspecified |
| scaffold18790 |
304 |
513 |
- |
RS363 |
Unspecified |
| scaffold18790 |
707 |
757 |
+ |
A-rich |
Low_complexity |
| scaffold18790 |
828 |
856 |
+ |
(T)n |
Simple_repeat |
| scaffold18790 |
1744 |
1769 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold18790 |
1892 |
2081 |
+ |
RS158 |
Unspecified |
| scaffold18790 |
2910 |
2956 |
- |
STOWAWAY2_ZM |
DNA/TcMar-Stowaway |
| scaffold18790 |
3182 |
3568 |
+ |
RS1200 |
Unspecified |
| scaffold18790 |
3730 |
3765 |
+ |
(TGA)n |
Simple_repeat |
| scaffold18790 |
4156 |
4473 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold18790 |
4370 |
4406 |
+ |
(TGG)n |
Simple_repeat |
| scaffold18790 |
4547 |
4604 |
- |
RS1819 |
Unspecified |
| scaffold18790 |
4547 |
4617 |
- |
RS10785 |
Unspecified |
| scaffold18790 |
4843 |
4913 |
+ |
RS10785 |
Unspecified |
| scaffold18790 |
4856 |
4913 |
+ |
RS1819 |
Unspecified |
| scaffold18790 |
5264 |
5299 |
+ |
(TGA)n |
Simple_repeat |
| scaffold18790 |
5885 |
5921 |
+ |
(TGG)n |
Simple_repeat |
| scaffold18790 |
6100 |
6188 |
+ |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold18790 |
6243 |
6602 |
- |
PL876 |
Unspecified |
| scaffold18790 |
8207 |
8411 |
- |
RS5787 |
Unspecified |
| scaffold18790 |
8376 |
8577 |
- |
RS10149 |
Unspecified |
| scaffold18790 |
10736 |
10794 |
+ |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold18790 |
12171 |
12199 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold18790 |
12200 |
12408 |
+ |
RS9793 |
Unspecified |
| scaffold18790 |
12415 |
12532 |
- |
RS9793 |
Unspecified |
| scaffold18790 |
13661 |
13700 |
+ |
Gypsy-196_ZM-I |
LTR/Gypsy |
| scaffold18790 |
13661 |
13930 |
+ |
Gypsy-196_ZM-I |
LTR/Gypsy |
| scaffold18790 |
13690 |
13930 |
+ |
RS350 |
Unspecified |
| scaffold18790 |
14605 |
14638 |
+ |
A-rich |
Low_complexity |
| scaffold18790 |
14788 |
15882 |
+ |
RS655 |
Unspecified |
| scaffold18790 |
14932 |
15745 |
+ |
RS1330 |
Unspecified |
| scaffold18790 |
15021 |
16801 |
- |
RS869 |
Unspecified |
| scaffold18790 |
15979 |
16955 |
+ |
RS4415 |
Unspecified |
| scaffold18790 |
17365 |
17435 |
+ |
(GGTTTT)n |
Simple_repeat |
| scaffold18790 |
17888 |
17914 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold18790 |
18023 |
18252 |
+ |
RS1120 |
Unspecified |
| scaffold18790 |
18159 |
19045 |
+ |
RS1203 |
Unspecified |
| scaffold18790 |
19094 |
19186 |
+ |
(GTTGA)n |
Simple_repeat |
| scaffold18790 |
19492 |
19514 |
+ |
(GATT)n |
Simple_repeat |
| scaffold18790 |
20646 |
20688 |
+ |
GYPSODE1_LTR |
LTR/Gypsy |
| scaffold18790 |
21673 |
21746 |
+ |
(TGTG)n |
Simple_repeat |
| scaffold18790 |
22649 |
22737 |
+ |
(GTTTTG)n |
Simple_repeat |
| scaffold18790 |
23002 |
23281 |
+ |
Gypsy1-PTR_I-int |
LTR/Gypsy |
| scaffold18790 |
23613 |
24291 |
- |
RS661 |
Unspecified |
| scaffold18790 |
23726 |
24279 |
- |
RS1706 |
Unspecified |
| scaffold18790 |
23791 |
24368 |
+ |
RS3005 |
Unspecified |
| scaffold18790 |
23795 |
24266 |
- |
RS6060 |
Unspecified |
| scaffold18790 |
24476 |
25123 |
+ |
Gypsy1-PTR_I-int |
LTR/Gypsy |
| scaffold18790 |
25288 |
25353 |
+ |
(ATG)n |
Simple_repeat |
| scaffold18790 |
25588 |
25593 |
+ |
(CTTTT)n |
Simple_repeat |
| scaffold18790 |
25594 |
25632 |
+ |
(TTTCCG)n |
Simple_repeat |
| scaffold18790 |
25633 |
25645 |
+ |
(CTTTT)n |
Simple_repeat |
| scaffold18790 |
26372 |
26428 |
+ |
(AACA)n |
Simple_repeat |
| scaffold18790 |
27040 |
27095 |
+ |
Athila8B_I-int |
LTR/Gypsy |
| scaffold18790 |
27916 |
27986 |
+ |
(GGTTTT)n |
Simple_repeat |
| scaffold18790 |
28569 |
28594 |
+ |
(ACTCA)n |
Simple_repeat |
| scaffold18790 |
29802 |
29874 |
- |
GYPOT1_I-int |
LTR/Gypsy |
| scaffold18790 |
30476 |
31112 |
+ |
RS1210 |
Unspecified |
| scaffold18790 |
31041 |
31139 |
- |
RS4278 |
Unspecified |
| scaffold18790 |
31203 |
31240 |
- |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold18790 |
31241 |
31258 |
- |
Copia-10_TC-I |
LTR/Copia |
| scaffold18790 |
31552 |
31633 |
+ |
A-rich |
Low_complexity |
| scaffold18790 |
35552 |
35753 |
+ |
RS4278 |
Unspecified |
| scaffold18790 |
35749 |
35970 |
- |
PL755 |
Unspecified |
| scaffold18790 |
37802 |
38303 |
- |
PL411 |
Unspecified |
| scaffold18790 |
38780 |
38851 |
+ |
(TCAATCA)n |
Simple_repeat |
| scaffold18790 |
38813 |
38862 |
+ |
(TCAA)n |
Simple_repeat |
| scaffold18790 |
38873 |
39984 |
+ |
RS783 |
Unspecified |
| scaffold18790 |
41585 |
42004 |
+ |
RS1060 |
Unspecified |
| scaffold18790 |
42018 |
42087 |
+ |
(CACAA)n |
Simple_repeat |
| scaffold18790 |
42229 |
42680 |
+ |
RS247 |
Unspecified |
| scaffold18790 |
42287 |
42743 |
+ |
RS247 |
Unspecified |
| scaffold18790 |
42349 |
42826 |
+ |
RS247 |
Unspecified |
| scaffold18790 |
42437 |
43042 |
+ |
RS247 |
Unspecified |
| scaffold18790 |
42501 |
43724 |
+ |
RS247 |
Unspecified |
| scaffold18790 |
43104 |
43992 |
+ |
RS52 |
Unspecified |
| scaffold18790 |
44191 |
44588 |
+ |
RS850 |
Unspecified |
| scaffold18790 |
44534 |
44752 |
+ |
RS1457 |
Unspecified |
| scaffold18790 |
44751 |
44887 |
+ |
RS850 |
Unspecified |
| scaffold18790 |
44833 |
45089 |
+ |
RS1457 |
Unspecified |
| scaffold18790 |
45624 |
45678 |
+ |
(TCTTAG)n |
Simple_repeat |
| scaffold18790 |
45831 |
45858 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold18790 |
47134 |
47189 |
+ |
(TATAACA)n |
Simple_repeat |
| scaffold18790 |
48275 |
48321 |
+ |
(TTCACTA)n |
Simple_repeat |
| scaffold18790 |
48322 |
48983 |
+ |
PL951 |
Unspecified |
| scaffold18790 |
48499 |
49082 |
+ |
RS6457 |
Unspecified |
| scaffold18790 |
49356 |
49400 |
+ |
A-rich |
Low_complexity |
| scaffold18790 |
49635 |
50053 |
- |
PL143 |
Unspecified |
| scaffold18790 |
50260 |
50289 |
+ |
(TAAGT)n |
Simple_repeat |
| scaffold18790 |
50418 |
51189 |
+ |
(AATATT)n |
Simple_repeat |
| scaffold18790 |
51109 |
51189 |
+ |
(AATATT)n |
Simple_repeat |
| scaffold18790 |
51634 |
51889 |
+ |
RS1867 |
Unspecified |
| scaffold18790 |
52285 |
52423 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold18790 |
52437 |
52468 |
+ |
(TTTGCA)n |
Simple_repeat |
| scaffold18790 |
53196 |
53295 |
+ |
A-rich |
Low_complexity |
| scaffold18790 |
54279 |
54325 |
+ |
A-rich |
Low_complexity |
| scaffold18790 |
54891 |
54936 |
+ |
Athila4C_I-int |
LTR/Gypsy |
| scaffold18790 |
55246 |
55520 |
+ |
RS850 |
Unspecified |
| scaffold18790 |
55506 |
55759 |
+ |
RS1457 |
Unspecified |
| scaffold18790 |
56295 |
56349 |
+ |
(TCTTAG)n |
Simple_repeat |
| scaffold18790 |
56509 |
57616 |
+ |
RS655 |
Unspecified |
| scaffold18790 |
56652 |
57479 |
+ |
RS1330 |
Unspecified |
| scaffold18790 |
58288 |
58373 |
+ |
(TGATTA)n |
Simple_repeat |
| scaffold18790 |
61351 |
61402 |
- |
ATLINE1_7 |
LINE/L1 |
| scaffold18790 |
61507 |
61900 |
- |
RS29 |
Unspecified |
| scaffold18790 |
62189 |
62240 |
+ |
(T)n |
Simple_repeat |
| scaffold18790 |
62368 |
62387 |
+ |
(A)n |
Simple_repeat |
| scaffold18790 |
62554 |
62588 |
+ |
(TTATTTTT)n |
Simple_repeat |
| scaffold18790 |
63728 |
63771 |
+ |
(AAT)n |
Simple_repeat |
| scaffold18790 |
63985 |
64031 |
+ |
A-rich |
Low_complexity |
| scaffold18790 |
64959 |
65019 |
+ |
A-rich |
Low_complexity |
| scaffold18790 |
65647 |
65772 |
- |
LINE1-6_OS |
LINE/L1 |
| scaffold18790 |
66895 |
66934 |
+ |
(TCCCT)n |
Simple_repeat |
| scaffold18790 |
68103 |
68283 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold18790 |
69203 |
69292 |
+ |
Copia-53_VV-I |
LTR/Copia |
| scaffold18790 |
69577 |
69601 |
+ |
(A)n |
Simple_repeat |
| scaffold18790 |
69621 |
69884 |
- |
RS3438 |
Unspecified |
| scaffold18790 |
70018 |
70041 |
+ |
(AGTTTTT)n |
Simple_repeat |
| scaffold18790 |
70042 |
70075 |
+ |
(TTAGTT)n |
Simple_repeat |
| scaffold18790 |
70349 |
70406 |
+ |
(TTGA)n |
Simple_repeat |
| scaffold18790 |
71284 |
71747 |
+ |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold18790 |
72212 |
72255 |
+ |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold18790 |
72232 |
72284 |
+ |
Gypsy-34_Mad-I |
LTR/Gypsy |