scaffold19166 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold19166 |
105 |
188 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
279 |
316 |
+ |
(CCGG)n |
Simple_repeat |
scaffold19166 |
699 |
921 |
+ |
PL803 |
Unspecified |
scaffold19166 |
1961 |
1993 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
2843 |
2885 |
+ |
(GATTGAG)n |
Simple_repeat |
scaffold19166 |
2894 |
2952 |
+ |
(TTATA)n |
Simple_repeat |
scaffold19166 |
3489 |
3527 |
+ |
(TTTTCTT)n |
Simple_repeat |
scaffold19166 |
8491 |
8518 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
11844 |
12085 |
+ |
RS145 |
Unspecified |
scaffold19166 |
12860 |
12915 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
14834 |
14868 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
15379 |
15397 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
15816 |
15858 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
15885 |
16118 |
+ |
RS17600 |
Unspecified |
scaffold19166 |
16176 |
16450 |
+ |
RS5563 |
Unspecified |
scaffold19166 |
16423 |
16554 |
+ |
RS8255 |
Unspecified |
scaffold19166 |
16642 |
16846 |
+ |
RS11180 |
Unspecified |
scaffold19166 |
16907 |
17465 |
+ |
RS72 |
Unspecified |
scaffold19166 |
17728 |
17980 |
- |
RS4 |
Unspecified |
scaffold19166 |
18012 |
18183 |
- |
RS3175 |
Unspecified |
scaffold19166 |
19359 |
19589 |
+ |
RS3687 |
Unspecified |
scaffold19166 |
19406 |
19631 |
- |
RS10013 |
Unspecified |
scaffold19166 |
19730 |
20105 |
- |
RS1818 |
Unspecified |
scaffold19166 |
20377 |
20416 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
20547 |
20769 |
- |
RS18 |
Unspecified |
scaffold19166 |
21067 |
21107 |
+ |
RS18371 |
Unspecified |
scaffold19166 |
21136 |
21209 |
- |
RS13100 |
Unspecified |
scaffold19166 |
21379 |
21404 |
+ |
(AAAT)n |
Simple_repeat |
scaffold19166 |
21560 |
21798 |
+ |
RS4 |
Unspecified |
scaffold19166 |
21567 |
21829 |
+ |
RS18405 |
Unspecified |
scaffold19166 |
22036 |
22085 |
+ |
(TCAATTT)n |
Simple_repeat |
scaffold19166 |
22285 |
22339 |
+ |
(TTTC)n |
Simple_repeat |
scaffold19166 |
23481 |
23555 |
+ |
(TTGATTT)n |
Simple_repeat |
scaffold19166 |
24709 |
24742 |
+ |
(CGGTCG)n |
Simple_repeat |
scaffold19166 |
25160 |
25218 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
25268 |
25537 |
+ |
RS17600 |
Unspecified |
scaffold19166 |
27122 |
27138 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
30508 |
30631 |
+ |
RS5561 |
Unspecified |
scaffold19166 |
30705 |
30748 |
+ |
(ACAC)n |
Simple_repeat |
scaffold19166 |
33421 |
33458 |
+ |
(CGAAGA)n |
Simple_repeat |
scaffold19166 |
34063 |
34123 |
- |
Gypsy-120_SB-I |
LTR/Gypsy |
scaffold19166 |
34814 |
34838 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
36678 |
36734 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
36808 |
36931 |
- |
RS16358 |
Unspecified |
scaffold19166 |
36837 |
37107 |
+ |
RS1 |
Unspecified |
scaffold19166 |
37763 |
37794 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
37923 |
38268 |
- |
RS853 |
Unspecified |
scaffold19166 |
38355 |
38487 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
scaffold19166 |
38533 |
38916 |
- |
RS793 |
Unspecified |
scaffold19166 |
40605 |
40623 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
41291 |
41351 |
+ |
(GGTTTGG)n |
Simple_repeat |
scaffold19166 |
41507 |
41527 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
42206 |
42229 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
44592 |
44625 |
+ |
(TCAGT)n |
Simple_repeat |
scaffold19166 |
44730 |
44764 |
+ |
(TTAA)n |
Simple_repeat |
scaffold19166 |
44943 |
45157 |
+ |
RS18405 |
Unspecified |
scaffold19166 |
45461 |
45708 |
+ |
RS145 |
Unspecified |
scaffold19166 |
45708 |
45714 |
+ |
(AATA)n |
Simple_repeat |
scaffold19166 |
45715 |
45752 |
+ |
(TAATTAA)n |
Simple_repeat |
scaffold19166 |
45753 |
45762 |
+ |
(AATA)n |
Simple_repeat |
scaffold19166 |
45928 |
45988 |
+ |
(TAT)n |
Simple_repeat |
scaffold19166 |
47600 |
47635 |
+ |
(AATGT)n |
Simple_repeat |
scaffold19166 |
48442 |
48486 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
48730 |
48808 |
+ |
RS1334 |
Unspecified |
scaffold19166 |
48835 |
48997 |
- |
LTR2-ZM_LTR |
LTR |
scaffold19166 |
49055 |
49161 |
+ |
RS1334 |
Unspecified |
scaffold19166 |
50143 |
50168 |
+ |
(TTTGA)n |
Simple_repeat |
scaffold19166 |
51754 |
51779 |
+ |
(AACCC)n |
Simple_repeat |
scaffold19166 |
52006 |
52054 |
+ |
(TTTG)n |
Simple_repeat |
scaffold19166 |
55311 |
55349 |
+ |
(TAAAAT)n |
Simple_repeat |
scaffold19166 |
55516 |
55562 |
+ |
(ATTA)n |
Simple_repeat |
scaffold19166 |
55823 |
55859 |
+ |
(TTTTTG)n |
Simple_repeat |
scaffold19166 |
56237 |
56345 |
- |
Copia-5_ST-I |
LTR/Copia |
scaffold19166 |
56392 |
56550 |
- |
Copia-16_ST-I |
LTR/Copia |
scaffold19166 |
59333 |
59361 |
+ |
(GT)n |
Simple_repeat |
scaffold19166 |
59577 |
59610 |
+ |
(ATTTTT)n |
Simple_repeat |
scaffold19166 |
59724 |
59742 |
+ |
(GGA)n |
Simple_repeat |
scaffold19166 |
63686 |
63707 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
64706 |
64738 |
+ |
(CTGTTG)n |
Simple_repeat |
scaffold19166 |
65564 |
65711 |
- |
RS6993 |
Unspecified |
scaffold19166 |
65931 |
65963 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
66930 |
66975 |
+ |
(ATTTCA)n |
Simple_repeat |
scaffold19166 |
66986 |
67096 |
+ |
SHAMET |
DNA/TcMar-Stowaway |
scaffold19166 |
67278 |
67313 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
67624 |
67662 |
+ |
(ATTT)n |
Simple_repeat |
scaffold19166 |
71494 |
71666 |
- |
RS133 |
Unspecified |
scaffold19166 |
72256 |
72490 |
+ |
RS4 |
Unspecified |
scaffold19166 |
72503 |
72582 |
+ |
(TTA)n |
Simple_repeat |
scaffold19166 |
72733 |
72763 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
72998 |
73036 |
+ |
(ACC)n |
Simple_repeat |
scaffold19166 |
75831 |
75857 |
+ |
(ATGGT)n |
Simple_repeat |
scaffold19166 |
77924 |
77955 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
78055 |
78076 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
78217 |
78379 |
+ |
RS11985 |
Unspecified |
scaffold19166 |
79163 |
79555 |
+ |
RS12555 |
Unspecified |
scaffold19166 |
79994 |
80110 |
- |
Copia-71_VV-I |
LTR/Copia |
scaffold19166 |
82192 |
82217 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
82780 |
83070 |
+ |
LTR2-ZM_LTR |
LTR |
scaffold19166 |
83943 |
84016 |
+ |
(TTTTA)n |
Simple_repeat |
scaffold19166 |
84151 |
84352 |
+ |
PL380 |
Unspecified |
scaffold19166 |
84382 |
84420 |
+ |
(AATTA)n |
Simple_repeat |
scaffold19166 |
84704 |
84761 |
+ |
(ATTAA)n |
Simple_repeat |
scaffold19166 |
84989 |
85028 |
+ |
(ATTTTAT)n |
Simple_repeat |
scaffold19166 |
85245 |
85294 |
+ |
(ATGG)n |
Simple_repeat |
scaffold19166 |
85654 |
85686 |
+ |
(TTCATA)n |
Simple_repeat |
scaffold19166 |
85774 |
85806 |
+ |
(GGAT)n |
Simple_repeat |
scaffold19166 |
86421 |
86454 |
+ |
(TT)n |
Simple_repeat |
scaffold19166 |
86699 |
86838 |
- |
RS5630 |
Unspecified |
scaffold19166 |
87896 |
87957 |
+ |
PL613 |
Unspecified |
scaffold19166 |
88685 |
88709 |
+ |
(AT)n |
Simple_repeat |
scaffold19166 |
89697 |
89982 |
- |
RS454 |
Unspecified |
scaffold19166 |
89977 |
90032 |
- |
RS454 |
Unspecified |
scaffold19166 |
90034 |
90177 |
- |
RS454 |
Unspecified |
scaffold19166 |
90234 |
90282 |
+ |
(ATTTT)n |
Simple_repeat |
scaffold19166 |
90448 |
90490 |
+ |
(TAACAT)n |
Simple_repeat |
scaffold19166 |
90572 |
90624 |
+ |
(CTTCACC)n |
Simple_repeat |
scaffold19166 |
91357 |
91420 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
92431 |
92492 |
+ |
RS13542 |
Unspecified |
scaffold19166 |
92824 |
92879 |
+ |
(CTTTACC)n |
Simple_repeat |
scaffold19166 |
93650 |
94525 |
- |
RS1975 |
Unspecified |
scaffold19166 |
94754 |
94861 |
+ |
RS144 |
Unspecified |
scaffold19166 |
95428 |
95463 |
+ |
(TTCATT)n |
Simple_repeat |
scaffold19166 |
95471 |
95500 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
95586 |
95746 |
+ |
RS11985 |
Unspecified |
scaffold19166 |
96802 |
97193 |
+ |
RS12555 |
Unspecified |
scaffold19166 |
98525 |
98548 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
98703 |
98731 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
98930 |
99219 |
+ |
RS1002 |
Unspecified |
scaffold19166 |
99302 |
99472 |
- |
RS509 |
Unspecified |
scaffold19166 |
99514 |
99644 |
- |
RS1904 |
Unspecified |
scaffold19166 |
100239 |
100381 |
- |
RS3189 |
Unspecified |
scaffold19166 |
100371 |
100594 |
+ |
RS2000 |
Unspecified |
scaffold19166 |
101101 |
101128 |
+ |
(AATG)n |
Simple_repeat |
scaffold19166 |
101595 |
101757 |
+ |
RS907 |
Unspecified |
scaffold19166 |
102265 |
102305 |
+ |
(ACA)n |
Simple_repeat |
scaffold19166 |
102444 |
102487 |
+ |
(AATA)n |
Simple_repeat |
scaffold19166 |
102486 |
102527 |
+ |
(AAGAG)n |
Simple_repeat |
scaffold19166 |
102635 |
102878 |
+ |
RS96 |
Unspecified |
scaffold19166 |
103555 |
104042 |
- |
PL753 |
Unspecified |
scaffold19166 |
104729 |
104760 |
+ |
(TTTCAT)n |
Simple_repeat |
scaffold19166 |
104826 |
104870 |
+ |
(TTCTTCA)n |
Simple_repeat |
scaffold19166 |
105030 |
105192 |
+ |
RS11985 |
Unspecified |
scaffold19166 |
106281 |
106672 |
+ |
RS12555 |
Unspecified |
scaffold19166 |
110270 |
110287 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
110389 |
111171 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold19166 |
111268 |
111560 |
+ |
Copia-71_VV-I |
LTR/Copia |
scaffold19166 |
111682 |
112560 |
+ |
Copia-71_VV-I |
LTR/Copia |
scaffold19166 |
112841 |
114451 |
+ |
Copia-71_VV-I |
LTR/Copia |
scaffold19166 |
114976 |
115007 |
+ |
(GGCCC)n |
Simple_repeat |
scaffold19166 |
115239 |
115296 |
+ |
(ATTT)n |
Simple_repeat |
scaffold19166 |
115347 |
115460 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
115512 |
115546 |
+ |
G-rich |
Low_complexity |
scaffold19166 |
116056 |
116147 |
+ |
(TTCTTCA)n |
Simple_repeat |
scaffold19166 |
116148 |
116156 |
+ |
(TTCA)n |
Simple_repeat |
scaffold19166 |
116274 |
116436 |
+ |
RS11985 |
Unspecified |
scaffold19166 |
117591 |
117982 |
+ |
RS12555 |
Unspecified |
scaffold19166 |
118783 |
118833 |
+ |
RS17 |
Unspecified |
scaffold19166 |
119206 |
119287 |
+ |
(TTCTTCA)n |
Simple_repeat |
scaffold19166 |
119461 |
119486 |
+ |
(GAA)n |
Simple_repeat |
scaffold19166 |
124917 |
124946 |
+ |
(GAA)n |
Simple_repeat |
scaffold19166 |
125071 |
125094 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
125286 |
125330 |
+ |
(ATATTA)n |
Simple_repeat |
scaffold19166 |
125385 |
125443 |
+ |
(TTTTA)n |
Simple_repeat |
scaffold19166 |
126162 |
126181 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
127677 |
127735 |
+ |
(TTC)n |
Simple_repeat |
scaffold19166 |
136691 |
136718 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
137695 |
137729 |
+ |
G-rich |
Low_complexity |
scaffold19166 |
137840 |
137914 |
- |
RS14512 |
Unspecified |
scaffold19166 |
137858 |
137989 |
+ |
(GGTCA)n |
Simple_repeat |
scaffold19166 |
137920 |
137989 |
+ |
(GGTCA)n |
Simple_repeat |
scaffold19166 |
141666 |
141682 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
142625 |
142890 |
- |
RS106 |
Unspecified |
scaffold19166 |
143773 |
143834 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
144479 |
144507 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
144752 |
144772 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
148695 |
148735 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
148844 |
148888 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
150527 |
150805 |
+ |
RS3522 |
Unspecified |
scaffold19166 |
150531 |
150701 |
+ |
RS573 |
Unspecified |
scaffold19166 |
151104 |
151150 |
+ |
GA-rich |
Low_complexity |
scaffold19166 |
152749 |
152772 |
+ |
(TTCT)n |
Simple_repeat |
scaffold19166 |
155173 |
155220 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
157636 |
157996 |
+ |
RS148 |
Unspecified |
scaffold19166 |
158571 |
158620 |
+ |
(AT)n |
Simple_repeat |
scaffold19166 |
160903 |
160978 |
+ |
(AACA)n |
Simple_repeat |
scaffold19166 |
161214 |
161236 |
+ |
(CGC)n |
Simple_repeat |
scaffold19166 |
161382 |
161425 |
+ |
(TGA)n |
Simple_repeat |
scaffold19166 |
161655 |
161713 |
+ |
(ATTCAA)n |
Simple_repeat |
scaffold19166 |
162111 |
162420 |
+ |
PL330 |
Unspecified |
scaffold19166 |
162658 |
162701 |
+ |
(ACC)n |
Simple_repeat |
scaffold19166 |
162702 |
162773 |
+ |
(ATA)n |
Simple_repeat |
scaffold19166 |
162999 |
163051 |
+ |
(CCCACGA)n |
Simple_repeat |
scaffold19166 |
163087 |
163131 |
+ |
(CCA)n |
Simple_repeat |
scaffold19166 |
163372 |
163412 |
- |
RS2390 |
Unspecified |
scaffold19166 |
164027 |
164043 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
166650 |
166708 |
+ |
PL261 |
Unspecified |
scaffold19166 |
166703 |
167156 |
+ |
RS283 |
Unspecified |
scaffold19166 |
167242 |
167259 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
167605 |
167836 |
- |
RS4 |
Unspecified |
scaffold19166 |
168008 |
168070 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
scaffold19166 |
169214 |
169285 |
+ |
RS4475 |
Unspecified |
scaffold19166 |
169917 |
169978 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold19166 |
171186 |
171224 |
+ |
GA-rich |
Low_complexity |
scaffold19166 |
171370 |
171474 |
- |
PL147 |
Unspecified |
scaffold19166 |
172112 |
172157 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
172662 |
172715 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
176160 |
176214 |
+ |
(TAT)n |
Simple_repeat |
scaffold19166 |
176911 |
177108 |
+ |
RS757 |
Unspecified |
scaffold19166 |
177191 |
177210 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
177501 |
177521 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
177621 |
177650 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
177758 |
177864 |
- |
RS1035 |
Unspecified |
scaffold19166 |
178024 |
178042 |
+ |
(TAG)n |
Simple_repeat |
scaffold19166 |
178344 |
178396 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold19166 |
178397 |
178591 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold19166 |
179661 |
179693 |
+ |
(GAGGG)n |
Simple_repeat |
scaffold19166 |
192338 |
192368 |
+ |
(TTCAT)n |
Simple_repeat |
scaffold19166 |
192623 |
192678 |
+ |
(TA)n |
Simple_repeat |
scaffold19166 |
192961 |
192996 |
+ |
(GATAATA)n |
Simple_repeat |
scaffold19166 |
193617 |
193697 |
+ |
(TTTGAA)n |
Simple_repeat |
scaffold19166 |
194028 |
194068 |
+ |
(AATTT)n |
Simple_repeat |
scaffold19166 |
194419 |
194476 |
+ |
A-rich |
Low_complexity |
scaffold19166 |
194890 |
194937 |
+ |
(AAT)n |
Simple_repeat |
scaffold19166 |
197610 |
197655 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
197828 |
197868 |
+ |
GA-rich |
Low_complexity |
scaffold19166 |
197928 |
197976 |
- |
RS5556 |
Unspecified |
scaffold19166 |
198004 |
198020 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
198428 |
198469 |
+ |
(A)n |
Simple_repeat |
scaffold19166 |
199241 |
199269 |
+ |
(T)n |
Simple_repeat |
scaffold19166 |
201792 |
201838 |
+ |
(TAT)n |
Simple_repeat |
scaffold19166 |
201999 |
202082 |
+ |
(TGG)n |
Simple_repeat |
scaffold19166 |
202085 |
202260 |
- |
RS371 |
Unspecified |
scaffold19166 |
202314 |
202492 |
- |
PL3 |
Unspecified |
scaffold19166 |
204310 |
204442 |
- |
PL241 |
Unspecified |
scaffold19166 |
204580 |
206592 |
+ |
gypsy |
gypsy(TransposonPSI) |