scaffold19313 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold19313 |
3 |
395 |
+ |
RS446 |
Unspecified |
| scaffold19313 |
543 |
635 |
+ |
(TTG)n |
Simple_repeat |
| scaffold19313 |
636 |
745 |
+ |
(TTC)n |
Simple_repeat |
| scaffold19313 |
746 |
854 |
+ |
(TTG)n |
Simple_repeat |
| scaffold19313 |
993 |
1051 |
+ |
(GTTGTA)n |
Simple_repeat |
| scaffold19313 |
1188 |
1215 |
+ |
(TTG)n |
Simple_repeat |
| scaffold19313 |
1216 |
1439 |
+ |
(TTC)n |
Simple_repeat |
| scaffold19313 |
1440 |
1548 |
+ |
(TTG)n |
Simple_repeat |
| scaffold19313 |
1687 |
1745 |
+ |
(GTTGTA)n |
Simple_repeat |
| scaffold19313 |
1742 |
1792 |
+ |
RS8910 |
Unspecified |
| scaffold19313 |
1784 |
2003 |
+ |
(TATG)n |
Simple_repeat |
| scaffold19313 |
1971 |
2003 |
+ |
(TATG)n |
Simple_repeat |
| scaffold19313 |
2004 |
2041 |
+ |
(TTG)n |
Simple_repeat |
| scaffold19313 |
2042 |
2068 |
+ |
(TATG)n |
Simple_repeat |
| scaffold19313 |
2069 |
2331 |
+ |
HELITRON7_OS |
RC/Helitron |
| scaffold19313 |
2332 |
2367 |
+ |
(TATG)n |
Simple_repeat |
| scaffold19313 |
3841 |
3876 |
+ |
(T)n |
Simple_repeat |
| scaffold19313 |
4081 |
4119 |
+ |
(AATAAT)n |
Simple_repeat |
| scaffold19313 |
4228 |
4481 |
- |
RS1780 |
Unspecified |
| scaffold19313 |
4487 |
4659 |
+ |
RS3698 |
Unspecified |
| scaffold19313 |
4712 |
4851 |
+ |
RS6409 |
Unspecified |
| scaffold19313 |
5170 |
5204 |
+ |
(T)n |
Simple_repeat |
| scaffold19313 |
5815 |
6851 |
- |
Copia-82_GM-I |
LTR/Copia |
| scaffold19313 |
7239 |
7262 |
+ |
(A)n |
Simple_repeat |
| scaffold19313 |
7334 |
7433 |
+ |
(CAC)n |
Simple_repeat |
| scaffold19313 |
7618 |
7897 |
+ |
(TTG)n |
Simple_repeat |
| scaffold19313 |
8201 |
8314 |
+ |
ENSPM2_VV |
DNA/CMC-EnSpm |
| scaffold19313 |
9130 |
10856 |
+ |
EnSpm-6_STu |
DNA/CMC-EnSpm |
| scaffold19313 |
10102 |
11193 |
- |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold19313 |
10911 |
11172 |
+ |
EnSpm-2_STu |
DNA/CMC-EnSpm |
| scaffold19313 |
11397 |
11438 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold19313 |
11722 |
11975 |
+ |
EnSpm-6_STu |
DNA/CMC-EnSpm |
| scaffold19313 |
12153 |
12190 |
+ |
(GAA)n |
Simple_repeat |
| scaffold19313 |
12327 |
12785 |
- |
RS1520 |
Unspecified |
| scaffold19313 |
12456 |
13107 |
- |
RS1765 |
Unspecified |
| scaffold19313 |
13135 |
13154 |
+ |
(T)n |
Simple_repeat |
| scaffold19313 |
13155 |
13239 |
+ |
(TTA)n |
Simple_repeat |
| scaffold19313 |
14463 |
14546 |
+ |
PSL |
DNA/CMC-EnSpm |
| scaffold19313 |
15150 |
15778 |
- |
Copia-31_GM-I |
LTR/Copia |
| scaffold19313 |
15882 |
16342 |
+ |
RS1434 |
Unspecified |
| scaffold19313 |
16298 |
16555 |
+ |
RS11935 |
Unspecified |
| scaffold19313 |
16653 |
16787 |
+ |
RS9094 |
Unspecified |
| scaffold19313 |
16841 |
17230 |
+ |
RS516 |
Unspecified |
| scaffold19313 |
17716 |
17745 |
+ |
(TTA)n |
Simple_repeat |
| scaffold19313 |
18560 |
18767 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold19313 |
19027 |
19093 |
- |
RS18371 |
Unspecified |
| scaffold19313 |
19657 |
19835 |
+ |
RS12788 |
Unspecified |
| scaffold19313 |
21059 |
21078 |
+ |
(A)n |
Simple_repeat |
| scaffold19313 |
21921 |
22084 |
+ |
RS2719 |
Unspecified |
| scaffold19313 |
22153 |
22183 |
+ |
(T)n |
Simple_repeat |
| scaffold19313 |
22238 |
22315 |
+ |
(T)n |
Simple_repeat |
| scaffold19313 |
23682 |
25168 |
- |
SHALINE10_MT |
LINE/L1 |
| scaffold19313 |
25477 |
26412 |
- |
Copia-82_GM-I |
LTR/Copia |
| scaffold19313 |
26405 |
26933 |
+ |
Copia-93_VV-I |
LTR/Copia |
| scaffold19313 |
27265 |
27483 |
+ |
Copia-93_VV-I |
LTR/Copia |
| scaffold19313 |
28562 |
28584 |
+ |
(T)n |
Simple_repeat |
| scaffold19313 |
28733 |
28855 |
+ |
RS343 |
Unspecified |
| scaffold19313 |
30696 |
30820 |
+ |
RS9295 |
Unspecified |
| scaffold19313 |
31025 |
31254 |
- |
EnSpm-3_VV |
DNA/CMC-EnSpm |
| scaffold19313 |
32678 |
32909 |
- |
RS5795 |
Unspecified |
| scaffold19313 |
33252 |
33492 |
- |
RS4151 |
Unspecified |
| scaffold19313 |
33873 |
33883 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold19313 |
34034 |
34104 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold19313 |
34305 |
34351 |
+ |
(ATTTAA)n |
Simple_repeat |
| scaffold19313 |
34530 |
34549 |
+ |
(T)n |
Simple_repeat |
| scaffold19313 |
35592 |
35681 |
- |
PL125 |
Unspecified |
| scaffold19313 |
35945 |
36001 |
+ |
(AT)n |
Simple_repeat |
| scaffold19313 |
36485 |
36692 |
- |
RS1351 |
Unspecified |
| scaffold19313 |
36513 |
36831 |
+ |
RS665 |
Unspecified |
| scaffold19313 |
36825 |
36890 |
- |
PL262 |
Unspecified |
| scaffold19313 |
36926 |
37292 |
- |
RS5075 |
Unspecified |
| scaffold19313 |
37309 |
37498 |
- |
RS4088 |
Unspecified |
| scaffold19313 |
37946 |
37991 |
+ |
(ATTATG)n |
Simple_repeat |
| scaffold19313 |
38835 |
38876 |
+ |
(GTTCA)n |
Simple_repeat |
| scaffold19313 |
38915 |
38983 |
+ |
(TTCAGTTCAA)n |
Simple_repeat |
| scaffold19313 |
39752 |
40015 |
+ |
PL529 |
Unspecified |
| scaffold19313 |
40078 |
40134 |
+ |
A-rich |
Low_complexity |
| scaffold19313 |
40417 |
40617 |
- |
RS12020 |
Unspecified |
| scaffold19313 |
40977 |
41036 |
+ |
(AT)n |
Simple_repeat |
| scaffold19313 |
41458 |
41614 |
+ |
RS13721 |
Unspecified |
| scaffold19313 |
41742 |
41888 |
+ |
RS10337 |
Unspecified |
| scaffold19313 |
42630 |
42718 |
- |
PL169 |
Unspecified |
| scaffold19313 |
42682 |
42723 |
+ |
PL296 |
Unspecified |
| scaffold19313 |
42714 |
43109 |
+ |
PL262 |
Unspecified |
| scaffold19313 |
44747 |
44870 |
- |
RS10677 |
Unspecified |
| scaffold19313 |
45557 |
45606 |
+ |
A-rich |
Low_complexity |
| scaffold19313 |
46000 |
46047 |
+ |
(AAGTAA)n |
Simple_repeat |
| scaffold19313 |
47221 |
47525 |
- |
RS6513 |
Unspecified |
| scaffold19313 |
48690 |
49221 |
+ |
PL782 |
Unspecified |
| scaffold19313 |
49307 |
49403 |
+ |
PL133 |
Unspecified |
| scaffold19313 |
49398 |
49441 |
- |
PL764 |
Unspecified |
| scaffold19313 |
49803 |
49842 |
+ |
A-rich |
Low_complexity |
| scaffold19313 |
50526 |
50644 |
- |
RS7519 |
Unspecified |
| scaffold19313 |
50659 |
50942 |
- |
RS9353 |
Unspecified |
| scaffold19313 |
51192 |
51216 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold19313 |
51472 |
51496 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold19313 |
53034 |
53058 |
+ |
(A)n |
Simple_repeat |
| scaffold19313 |
53524 |
53566 |
+ |
(T)n |
Simple_repeat |
| scaffold19313 |
53882 |
54413 |
+ |
PL782 |
Unspecified |
| scaffold19313 |
54528 |
54567 |
+ |
(AATGTGA)n |
Simple_repeat |
| scaffold19313 |
54688 |
54745 |
+ |
PL529 |
Unspecified |
| scaffold19313 |
55611 |
56480 |
+ |
(AC)n |
Simple_repeat |
| scaffold19313 |
55611 |
55663 |
+ |
(AC)n |
Simple_repeat |
| scaffold19313 |
55640 |
56480 |
- |
RS658 |
Unspecified |
| scaffold19313 |
56480 |
56574 |
+ |
PL529 |
Unspecified |
| scaffold19313 |
56599 |
56699 |
+ |
A-rich |
Low_complexity |
| scaffold19313 |
56855 |
56917 |
+ |
(ATTTG)n |
Simple_repeat |
| scaffold19313 |
57128 |
57359 |
+ |
RS3022 |
Unspecified |
| scaffold19313 |
57868 |
57905 |
+ |
(CTCGG)n |
Simple_repeat |
| scaffold19313 |
58204 |
58238 |
+ |
(GAGCTT)n |
Simple_repeat |
| scaffold19313 |
58444 |
58653 |
+ |
RS2000 |
Unspecified |
| scaffold19313 |
58807 |
58834 |
+ |
(A)n |
Simple_repeat |
| scaffold19313 |
60075 |
60104 |
+ |
A-rich |
Low_complexity |
| scaffold19313 |
61665 |
61879 |
- |
RS537 |
Unspecified |
| scaffold19313 |
64849 |
66318 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold19313 |
65199 |
65952 |
+ |
L1-1_GM |
LINE/L1 |
| scaffold19313 |
67148 |
67251 |
+ |
RS836 |
Unspecified |
| scaffold19313 |
67789 |
67834 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold19313 |
67981 |
68355 |
- |
RS8 |
Unspecified |
| scaffold19313 |
68543 |
68582 |
+ |
(TTAATAA)n |
Simple_repeat |
| scaffold19313 |
69036 |
69129 |
- |
RS215 |
Unspecified |
| scaffold19313 |
69230 |
69285 |
+ |
(TATA)n |
Simple_repeat |
| scaffold19313 |
69465 |
69504 |
+ |
A-rich |
Low_complexity |
| scaffold19313 |
70014 |
70067 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold19313 |
70066 |
70279 |
+ |
RS1362 |
Unspecified |
| scaffold19313 |
70330 |
70649 |
- |
RS1436 |
Unspecified |
| scaffold19313 |
70952 |
71123 |
- |
RS1286 |
Unspecified |
| scaffold19313 |
71157 |
71198 |
+ |
A-rich |
Low_complexity |
| scaffold19313 |
71295 |
71338 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold19313 |
72174 |
72280 |
- |
RS35 |
Unspecified |
| scaffold19313 |
72452 |
72663 |
- |
Copia-64_GM-I |
LTR/Copia |
| scaffold19313 |
72744 |
72798 |
+ |
(ATT)n |
Simple_repeat |
| scaffold19313 |
73006 |
73345 |
- |
PL301 |
Unspecified |
| scaffold19313 |
73346 |
73378 |
+ |
(AATTC)n |
Simple_repeat |
| scaffold19313 |
74452 |
74494 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold19313 |
74506 |
74580 |
+ |
GA-rich |
Low_complexity |
| scaffold19313 |
74525 |
74580 |
+ |
GA-rich |
Low_complexity |
| scaffold19313 |
78697 |
78728 |
+ |
(T)n |
Simple_repeat |
| scaffold19313 |
82219 |
82254 |
+ |
(GACAC)n |
Simple_repeat |
| scaffold19313 |
82924 |
82940 |
+ |
(A)n |
Simple_repeat |
| scaffold19313 |
83074 |
83305 |
+ |
RS318 |
Unspecified |
| scaffold19313 |
83289 |
83361 |
+ |
RS1101 |
Unspecified |
| scaffold19313 |
83966 |
83996 |
+ |
(CACCAA)n |
Simple_repeat |
| scaffold19313 |
84290 |
84326 |
+ |
(TAACAA)n |
Simple_repeat |
| scaffold19313 |
84534 |
84573 |
+ |
(TAACAA)n |
Simple_repeat |
| scaffold19313 |
84951 |
85152 |
- |
Copia-85_ST-I |
LTR/Copia |
| scaffold19313 |
85403 |
85560 |
- |
Copia26-VV_I-int |
LTR/Copia |
| scaffold19313 |
90735 |
90838 |
- |
RS1848 |
Unspecified |
| scaffold19313 |
90910 |
91107 |
+ |
RS1943 |
Unspecified |
| scaffold19313 |
91141 |
91189 |
+ |
A-rich |
Low_complexity |
| scaffold19313 |
91242 |
91260 |
+ |
(T)n |
Simple_repeat |
| scaffold19313 |
91604 |
94977 |
- |
Copia-44_ZM-I |
LTR/Copia |
| scaffold19313 |
95091 |
95816 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold19313 |
96672 |
96707 |
+ |
(AT)n |
Simple_repeat |
| scaffold19313 |
96825 |
96881 |
+ |
(ACAATT)n |
Simple_repeat |
| scaffold19313 |
96938 |
97121 |
- |
RS5215 |
Unspecified |
| scaffold19313 |
101956 |
102044 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold19313 |
102209 |
102276 |
- |
RS1127 |
Unspecified |
| scaffold19313 |
102218 |
102284 |
- |
PL621 |
Unspecified |
| scaffold19313 |
102382 |
102418 |
+ |
(AAGTCA)n |
Simple_repeat |
| scaffold19313 |
103066 |
103094 |
+ |
(AATAGT)n |
Simple_repeat |
| scaffold19313 |
104052 |
104099 |
+ |
(TTCTAA)n |
Simple_repeat |
| scaffold19313 |
104457 |
104493 |
+ |
A-rich |
Low_complexity |
| scaffold19313 |
106865 |
106915 |
+ |
(T)n |
Simple_repeat |
| scaffold19313 |
107429 |
107458 |
+ |
(CATCTT)n |
Simple_repeat |
| scaffold19313 |
108096 |
108141 |
+ |
(AAACT)n |
Simple_repeat |
| scaffold19313 |
108148 |
108181 |
+ |
(TCTAC)n |
Simple_repeat |
| scaffold19313 |
109378 |
109735 |
+ |
RS3032 |
Unspecified |
| scaffold19313 |
109983 |
110198 |
- |
RS326 |
Unspecified |
| scaffold19313 |
111150 |
111251 |
+ |
RS6740 |
Unspecified |
| scaffold19313 |
111291 |
111809 |
+ |
RS326 |
Unspecified |
| scaffold19313 |
113200 |
113235 |
+ |
(GTTTATCG)n |
Simple_repeat |
| scaffold19313 |
113351 |
113441 |
- |
PL926 |
Unspecified |
| scaffold19313 |
113584 |
113611 |
+ |
(ATAAA)n |
Simple_repeat |
| scaffold19313 |
114573 |
114657 |
+ |
(TAA)n |
Simple_repeat |
| scaffold19313 |
114716 |
114863 |
- |
RS9117 |
Unspecified |