scaffold20171 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold20171 |
914 |
965 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
1634 |
2228 |
- |
PL743 |
Unspecified |
| scaffold20171 |
2224 |
2462 |
+ |
PL372 |
Unspecified |
| scaffold20171 |
2824 |
2864 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold20171 |
2865 |
2883 |
+ |
(T)n |
Simple_repeat |
| scaffold20171 |
2884 |
2901 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold20171 |
3121 |
3153 |
+ |
G-rich |
Low_complexity |
| scaffold20171 |
3576 |
4014 |
- |
RS228 |
Unspecified |
| scaffold20171 |
4031 |
4398 |
+ |
PL127 |
Unspecified |
| scaffold20171 |
4721 |
4742 |
+ |
(T)n |
Simple_repeat |
| scaffold20171 |
4801 |
4835 |
+ |
(TACAAA)n |
Simple_repeat |
| scaffold20171 |
5700 |
5771 |
+ |
(T)n |
Simple_repeat |
| scaffold20171 |
7209 |
8350 |
- |
RS254 |
Unspecified |
| scaffold20171 |
8527 |
8678 |
- |
PL522 |
Unspecified |
| scaffold20171 |
13993 |
15061 |
- |
RS254 |
Unspecified |
| scaffold20171 |
16091 |
16133 |
+ |
(T)n |
Simple_repeat |
| scaffold20171 |
16413 |
16472 |
+ |
RS674 |
Unspecified |
| scaffold20171 |
16893 |
16962 |
- |
CACTA_LP |
DNA/CMC-EnSpm |
| scaffold20171 |
18135 |
18145 |
+ |
CACTA_LP |
DNA/CMC-EnSpm |
| scaffold20171 |
18146 |
18192 |
- |
ATCopia24I |
LTR/Copia |
| scaffold20171 |
18653 |
18851 |
+ |
RS9735 |
Unspecified |
| scaffold20171 |
19452 |
19482 |
+ |
(AATAT)n |
Simple_repeat |
| scaffold20171 |
21976 |
22017 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
22403 |
22452 |
+ |
(AATCA)n |
Simple_repeat |
| scaffold20171 |
22547 |
22587 |
+ |
(CTATAT)n |
Simple_repeat |
| scaffold20171 |
25689 |
25738 |
+ |
(CAATT)n |
Simple_repeat |
| scaffold20171 |
26009 |
26061 |
+ |
(GTT)n |
Simple_repeat |
| scaffold20171 |
28805 |
28840 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold20171 |
31272 |
31368 |
+ |
(GTT)n |
Simple_repeat |
| scaffold20171 |
31326 |
31374 |
+ |
(TTGTCG)n |
Simple_repeat |
| scaffold20171 |
31787 |
31866 |
+ |
(TGT)n |
Simple_repeat |
| scaffold20171 |
32131 |
32147 |
+ |
(A)n |
Simple_repeat |
| scaffold20171 |
32203 |
32259 |
+ |
(ATACA)n |
Simple_repeat |
| scaffold20171 |
32899 |
33198 |
+ |
RS693 |
Unspecified |
| scaffold20171 |
33428 |
33476 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
33898 |
34218 |
+ |
RS265 |
Unspecified |
| scaffold20171 |
35006 |
35132 |
- |
RS313 |
Unspecified |
| scaffold20171 |
35154 |
35178 |
+ |
(TG)n |
Simple_repeat |
| scaffold20171 |
35630 |
36076 |
- |
RS234 |
Unspecified |
| scaffold20171 |
36367 |
36398 |
+ |
(AT)n |
Simple_repeat |
| scaffold20171 |
36451 |
36477 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold20171 |
37047 |
37087 |
+ |
(TTTTTC)n |
Simple_repeat |
| scaffold20171 |
41587 |
41671 |
+ |
LTR-2_MX-LTR |
LTR |
| scaffold20171 |
42574 |
42625 |
- |
GYPSOR1_I-int |
LTR/Gypsy |
| scaffold20171 |
47474 |
47506 |
+ |
(GAT)n |
Simple_repeat |
| scaffold20171 |
47780 |
47825 |
+ |
(TAA)n |
Simple_repeat |
| scaffold20171 |
48178 |
48230 |
- |
PL687 |
Unspecified |
| scaffold20171 |
49563 |
49770 |
- |
RS11778 |
Unspecified |
| scaffold20171 |
49911 |
50078 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
50476 |
50542 |
- |
DANIELA_TM-int |
LTR/Gypsy |
| scaffold20171 |
50659 |
50705 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
50756 |
50793 |
+ |
(AATAGAG)n |
Simple_repeat |
| scaffold20171 |
50931 |
51149 |
- |
Copia-85_ST-I |
LTR/Copia |
| scaffold20171 |
51409 |
51579 |
- |
Copia26-VV_I-int |
LTR/Copia |
| scaffold20171 |
53258 |
53361 |
- |
OPHELIA3_HV |
LTR/Gypsy |
| scaffold20171 |
53944 |
54004 |
+ |
(TTCTT)n |
Simple_repeat |
| scaffold20171 |
54684 |
54798 |
- |
Athila7A_I-int |
LTR/Gypsy |
| scaffold20171 |
55255 |
55901 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold20171 |
56020 |
56507 |
+ |
RS1930 |
Unspecified |
| scaffold20171 |
56517 |
56589 |
+ |
(GTT)n |
Simple_repeat |
| scaffold20171 |
56993 |
57234 |
- |
GYPSHAN_I_MT-int |
LTR/Gypsy |
| scaffold20171 |
57295 |
57342 |
- |
Gypsy-39_PT-I |
LTR/Gypsy |
| scaffold20171 |
57967 |
58160 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold20171 |
61555 |
61618 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold20171 |
62115 |
62153 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
62199 |
62262 |
+ |
(TAGATA)n |
Simple_repeat |
| scaffold20171 |
62342 |
62489 |
+ |
RS84 |
Unspecified |
| scaffold20171 |
64628 |
64646 |
+ |
(A)n |
Simple_repeat |
| scaffold20171 |
65233 |
65421 |
+ |
(GTG)n |
Simple_repeat |
| scaffold20171 |
66124 |
66130 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold20171 |
66131 |
66180 |
+ |
(AT)n |
Simple_repeat |
| scaffold20171 |
66882 |
66920 |
+ |
LT1_EPa |
LTR? |
| scaffold20171 |
67042 |
67155 |
+ |
PL698 |
Unspecified |
| scaffold20171 |
67190 |
67210 |
+ |
(A)n |
Simple_repeat |
| scaffold20171 |
67549 |
67636 |
+ |
PL698 |
Unspecified |
| scaffold20171 |
67731 |
67762 |
+ |
(T)n |
Simple_repeat |
| scaffold20171 |
68550 |
68582 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
69435 |
69554 |
- |
RS4 |
Unspecified |
| scaffold20171 |
69923 |
69988 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
70297 |
70313 |
+ |
(T)n |
Simple_repeat |
| scaffold20171 |
72493 |
72510 |
+ |
(T)n |
Simple_repeat |
| scaffold20171 |
75463 |
75501 |
+ |
(AATTTC)n |
Simple_repeat |
| scaffold20171 |
75525 |
75638 |
+ |
RS15534 |
Unspecified |
| scaffold20171 |
75750 |
75826 |
+ |
DNA-TA-1_STu |
DNA/TcMar-Stowaway |
| scaffold20171 |
76204 |
76362 |
+ |
Gypsy5-VV_I-int |
LTR/Gypsy |
| scaffold20171 |
76391 |
77093 |
+ |
Gypsy5-VV_I-int |
LTR/Gypsy |
| scaffold20171 |
77314 |
77598 |
+ |
RS703 |
Unspecified |
| scaffold20171 |
78802 |
78826 |
+ |
(TA)n |
Simple_repeat |
| scaffold20171 |
78969 |
79021 |
- |
RS1978 |
Unspecified |
| scaffold20171 |
79022 |
79043 |
+ |
(A)n |
Simple_repeat |
| scaffold20171 |
79060 |
79116 |
- |
RS1978 |
Unspecified |
| scaffold20171 |
79143 |
79183 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold20171 |
79295 |
79326 |
+ |
(TA)n |
Simple_repeat |
| scaffold20171 |
79442 |
79484 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
79872 |
79955 |
+ |
(TT)n |
Simple_repeat |
| scaffold20171 |
80104 |
80149 |
+ |
(AAGGTTT)n |
Simple_repeat |
| scaffold20171 |
80174 |
80443 |
- |
RS752 |
Unspecified |
| scaffold20171 |
80503 |
80534 |
+ |
(TTAGTT)n |
Simple_repeat |
| scaffold20171 |
80570 |
80609 |
+ |
(ATTTGAA)n |
Simple_repeat |
| scaffold20171 |
80973 |
81035 |
- |
RS3726 |
Unspecified |
| scaffold20171 |
81046 |
81390 |
+ |
RS8518 |
Unspecified |
| scaffold20171 |
81430 |
81478 |
+ |
HelitronY3 |
RC/Helitron |
| scaffold20171 |
81537 |
81845 |
- |
RS899 |
Unspecified |
| scaffold20171 |
81706 |
82123 |
+ |
RS9646 |
Unspecified |
| scaffold20171 |
82125 |
82272 |
+ |
RS14734 |
Unspecified |
| scaffold20171 |
82300 |
82378 |
- |
RS1657 |
Unspecified |
| scaffold20171 |
83379 |
83428 |
+ |
(T)n |
Simple_repeat |
| scaffold20171 |
83550 |
83569 |
+ |
(TA)n |
Simple_repeat |
| scaffold20171 |
83550 |
83724 |
+ |
(TA)n |
Simple_repeat |
| scaffold20171 |
83560 |
83724 |
- |
RS2394 |
Unspecified |
| scaffold20171 |
83833 |
83882 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
84150 |
84187 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
84384 |
84414 |
+ |
(T)n |
Simple_repeat |
| scaffold20171 |
84415 |
84422 |
+ |
(TTTTTAA)n |
Simple_repeat |
| scaffold20171 |
84674 |
84706 |
+ |
(T)n |
Simple_repeat |
| scaffold20171 |
84875 |
85176 |
+ |
RS14637 |
Unspecified |
| scaffold20171 |
85099 |
85291 |
+ |
RS14637 |
Unspecified |
| scaffold20171 |
85229 |
85419 |
- |
RS6175 |
Unspecified |
| scaffold20171 |
85598 |
85653 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold20171 |
86291 |
86309 |
+ |
(A)n |
Simple_repeat |
| scaffold20171 |
86408 |
86437 |
+ |
(A)n |
Simple_repeat |
| scaffold20171 |
86439 |
87007 |
+ |
PL469 |
Unspecified |
| scaffold20171 |
87249 |
87288 |
+ |
(ACAATT)n |
Simple_repeat |
| scaffold20171 |
87657 |
87716 |
+ |
RS420 |
Unspecified |
| scaffold20171 |
88070 |
88150 |
- |
PL502 |
Unspecified |
| scaffold20171 |
88199 |
89894 |
- |
RS658 |
Unspecified |
| scaffold20171 |
89370 |
90512 |
+ |
RS1496 |
Unspecified |
| scaffold20171 |
91813 |
92326 |
+ |
PL600 |
Unspecified |
| scaffold20171 |
92753 |
92770 |
+ |
(ATA)n |
Simple_repeat |
| scaffold20171 |
92835 |
92902 |
+ |
(CAACAG)n |
Simple_repeat |
| scaffold20171 |
93794 |
93982 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold20171 |
94129 |
94330 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold20171 |
94354 |
95058 |
- |
RS775 |
Unspecified |
| scaffold20171 |
95039 |
95498 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold20171 |
95841 |
96009 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold20171 |
97525 |
97560 |
+ |
(TAAGAAT)n |
Simple_repeat |
| scaffold20171 |
98649 |
98681 |
+ |
(TTCA)n |
Simple_repeat |
| scaffold20171 |
98767 |
98822 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold20171 |
101098 |
101127 |
+ |
(TTTCT)n |
Simple_repeat |
| scaffold20171 |
103210 |
103270 |
+ |
(T)n |
Simple_repeat |
| scaffold20171 |
103271 |
103311 |
+ |
(G)n |
Simple_repeat |
| scaffold20171 |
103350 |
103464 |
+ |
(CAGGT)n |
Simple_repeat |
| scaffold20171 |
104325 |
104383 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold20171 |
106250 |
106472 |
+ |
RS10546 |
Unspecified |
| scaffold20171 |
107911 |
107996 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold20171 |
108381 |
108423 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
115189 |
115247 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
115711 |
115740 |
+ |
(T)n |
Simple_repeat |
| scaffold20171 |
116664 |
117558 |
+ |
PL532 |
Unspecified |
| scaffold20171 |
117695 |
117728 |
+ |
(ATAC)n |
Simple_repeat |
| scaffold20171 |
117757 |
118068 |
+ |
RS266 |
Unspecified |
| scaffold20171 |
117865 |
118110 |
+ |
RS1963 |
Unspecified |
| scaffold20171 |
118244 |
118311 |
+ |
(TCCTTT)n |
Simple_repeat |
| scaffold20171 |
118619 |
118664 |
+ |
(TAA)n |
Simple_repeat |
| scaffold20171 |
119059 |
119102 |
+ |
(ATGTTG)n |
Simple_repeat |
| scaffold20171 |
120075 |
120165 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold20171 |
120303 |
120351 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
121331 |
121590 |
+ |
PL578 |
Unspecified |
| scaffold20171 |
121636 |
121810 |
+ |
RS12774 |
Unspecified |
| scaffold20171 |
121802 |
122117 |
- |
ATCopia83_I-int |
LTR/Copia |
| scaffold20171 |
121802 |
122256 |
- |
ATCopia83_I-int |
LTR/Copia |
| scaffold20171 |
122061 |
122256 |
+ |
PL578 |
Unspecified |
| scaffold20171 |
122509 |
122701 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold20171 |
122836 |
122890 |
+ |
A-rich |
Low_complexity |
| scaffold20171 |
123143 |
123255 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold20171 |
123405 |
123412 |
+ |
(ATTTTA)n |
Simple_repeat |
| scaffold20171 |
123413 |
123443 |
+ |
(T)n |
Simple_repeat |