scaffold20537 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold20537 |
3 |
527 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold20537 |
3 |
854 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold20537 |
440 |
854 |
- |
PL816 |
Unspecified |
| scaffold20537 |
1593 |
1647 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold20537 |
1741 |
2512 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold20537 |
2345 |
2415 |
+ |
PL517 |
Unspecified |
| scaffold20537 |
2420 |
2456 |
+ |
(TAT)n |
Simple_repeat |
| scaffold20537 |
2462 |
2556 |
+ |
(AAT)n |
Simple_repeat |
| scaffold20537 |
3136 |
3175 |
+ |
(TAT)n |
Simple_repeat |
| scaffold20537 |
3178 |
3225 |
+ |
(T)n |
Simple_repeat |
| scaffold20537 |
4214 |
5752 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold20537 |
4369 |
5358 |
- |
L1-1_GM |
LINE/L1 |
| scaffold20537 |
7944 |
7990 |
+ |
(TTA)n |
Simple_repeat |
| scaffold20537 |
8011 |
8163 |
+ |
PL517 |
Unspecified |
| scaffold20537 |
8704 |
8750 |
+ |
(ACA)n |
Simple_repeat |
| scaffold20537 |
8779 |
8894 |
+ |
(TGAAC)n |
Simple_repeat |
| scaffold20537 |
9320 |
9366 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold20537 |
9584 |
9609 |
+ |
(ATC)n |
Simple_repeat |
| scaffold20537 |
9696 |
9723 |
+ |
(T)n |
Simple_repeat |
| scaffold20537 |
9821 |
9870 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold20537 |
10083 |
10101 |
+ |
(T)n |
Simple_repeat |
| scaffold20537 |
10943 |
11182 |
+ |
cacta |
cacta(TransposonPSI) |
| scaffold20537 |
11695 |
12306 |
- |
PL221 |
Unspecified |
| scaffold20537 |
12310 |
12474 |
- |
RS1140 |
Unspecified |
| scaffold20537 |
12707 |
12885 |
- |
RS7348 |
Unspecified |
| scaffold20537 |
12958 |
12981 |
+ |
(A)n |
Simple_repeat |
| scaffold20537 |
13743 |
13915 |
- |
RS133 |
Unspecified |
| scaffold20537 |
14096 |
14136 |
+ |
(T)n |
Simple_repeat |
| scaffold20537 |
14379 |
14400 |
+ |
(A)n |
Simple_repeat |
| scaffold20537 |
14658 |
14713 |
+ |
(AATT)n |
Simple_repeat |
| scaffold20537 |
18663 |
18701 |
+ |
(TTAGT)n |
Simple_repeat |
| scaffold20537 |
22843 |
22861 |
+ |
(AGT)n |
Simple_repeat |
| scaffold20537 |
23079 |
23652 |
+ |
PL40 |
Unspecified |
| scaffold20537 |
23673 |
23835 |
+ |
RS441 |
Unspecified |
| scaffold20537 |
23696 |
23870 |
- |
RS18308 |
Unspecified |
| scaffold20537 |
24375 |
24448 |
- |
RS441 |
Unspecified |
| scaffold20537 |
24534 |
24596 |
+ |
RS6405 |
Unspecified |
| scaffold20537 |
24707 |
24752 |
+ |
(CTCTT)n |
Simple_repeat |
| scaffold20537 |
24891 |
24940 |
+ |
(TTTATTT)n |
Simple_repeat |
| scaffold20537 |
25251 |
25591 |
+ |
PL757 |
Unspecified |
| scaffold20537 |
25311 |
25636 |
+ |
RS1716 |
Unspecified |
| scaffold20537 |
25781 |
25963 |
+ |
RS26 |
Unspecified |
| scaffold20537 |
25944 |
26228 |
+ |
PL153 |
Unspecified |
| scaffold20537 |
26219 |
26483 |
- |
PL153 |
Unspecified |
| scaffold20537 |
27473 |
27744 |
- |
PL560 |
Unspecified |
| scaffold20537 |
27515 |
28062 |
- |
PL622 |
Unspecified |
| scaffold20537 |
33294 |
34133 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold20537 |
33307 |
33604 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold20537 |
33699 |
33928 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold20537 |
34194 |
35514 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold20537 |
36011 |
36493 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold20537 |
38009 |
38054 |
+ |
(TA)n |
Simple_repeat |
| scaffold20537 |
38009 |
38343 |
+ |
(TA)n |
Simple_repeat |
| scaffold20537 |
38035 |
38343 |
+ |
RS1459 |
Unspecified |
| scaffold20537 |
38510 |
38647 |
- |
RS742 |
Unspecified |
| scaffold20537 |
39257 |
39337 |
+ |
(ATA)n |
Simple_repeat |
| scaffold20537 |
40126 |
40176 |
+ |
(AAT)n |
Simple_repeat |
| scaffold20537 |
40176 |
40450 |
- |
RS3896 |
Unspecified |
| scaffold20537 |
40478 |
40723 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold20537 |
40732 |
41031 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold20537 |
41029 |
41317 |
+ |
RS3896 |
Unspecified |
| scaffold20537 |
41316 |
41360 |
+ |
(TAA)n |
Simple_repeat |
| scaffold20537 |
41359 |
42014 |
- |
RS1868 |
Unspecified |
| scaffold20537 |
43314 |
43895 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold20537 |
43921 |
44847 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold20537 |
43928 |
44405 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold20537 |
46775 |
47446 |
+ |
RS3897 |
Unspecified |
| scaffold20537 |
46877 |
47448 |
- |
RS23 |
Unspecified |
| scaffold20537 |
48454 |
48472 |
+ |
(A)n |
Simple_repeat |
| scaffold20537 |
48454 |
48545 |
+ |
(A)n |
Simple_repeat |
| scaffold20537 |
48466 |
48732 |
+ |
(TAA)n |
Simple_repeat |
| scaffold20537 |
48533 |
48732 |
+ |
(TAA)n |
Simple_repeat |
| scaffold20537 |
49454 |
49490 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold20537 |
49726 |
49752 |
+ |
(TAAA)n |
Simple_repeat |
| scaffold20537 |
51589 |
51711 |
- |
Helitron-2_PTr |
RC/Helitron |
| scaffold20537 |
51863 |
51945 |
+ |
(ATTGA)n |
Simple_repeat |
| scaffold20537 |
53939 |
53963 |
+ |
(AGCTC)n |
Simple_repeat |
| scaffold20537 |
55712 |
55738 |
+ |
A-rich |
Low_complexity |
| scaffold20537 |
56995 |
57071 |
+ |
A-rich |
Low_complexity |
| scaffold20537 |
57424 |
57514 |
+ |
(TTTGG)n |
Simple_repeat |
| scaffold20537 |
58128 |
58153 |
+ |
(T)n |
Simple_repeat |
| scaffold20537 |
58517 |
59091 |
- |
PL53 |
Unspecified |
| scaffold20537 |
59199 |
59221 |
+ |
(A)n |
Simple_repeat |
| scaffold20537 |
59496 |
59896 |
- |
RS29 |
Unspecified |
| scaffold20537 |
60545 |
60635 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold20537 |
61006 |
61026 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold20537 |
61027 |
61056 |
+ |
(T)n |
Simple_repeat |
| scaffold20537 |
61057 |
61086 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold20537 |
62186 |
62309 |
+ |
Helitron-2_PTr |
RC/Helitron |
| scaffold20537 |
65801 |
66278 |
- |
PL795 |
Unspecified |
| scaffold20537 |
66193 |
66338 |
- |
RS3350 |
Unspecified |
| scaffold20537 |
67225 |
67335 |
- |
RS4369 |
Unspecified |
| scaffold20537 |
67337 |
67439 |
- |
RS3328 |
Unspecified |
| scaffold20537 |
67440 |
67551 |
- |
RS3328 |
Unspecified |
| scaffold20537 |
67552 |
68757 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold20537 |
67747 |
68757 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold20537 |
68212 |
68756 |
+ |
MuDR-1_PD |
DNA/MULE-MuDR |
| scaffold20537 |
68858 |
69808 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold20537 |
68939 |
69168 |
+ |
MuDR-1_PD |
DNA/MULE-MuDR |
| scaffold20537 |
69911 |
69956 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold20537 |
69976 |
70280 |
- |
RS5837 |
Unspecified |
| scaffold20537 |
70716 |
71275 |
- |
RS1290 |
Unspecified |
| scaffold20537 |
71350 |
71430 |
- |
PL815 |
Unspecified |
| scaffold20537 |
71970 |
72126 |
+ |
PL503 |
Unspecified |
| scaffold20537 |
72595 |
72615 |
+ |
(TATG)n |
Simple_repeat |
| scaffold20537 |
72666 |
72724 |
- |
RS3077 |
Unspecified |
| scaffold20537 |
72666 |
72731 |
+ |
RS6602 |
Unspecified |
| scaffold20537 |
76408 |
76436 |
+ |
(TGTAATT)n |
Simple_repeat |
| scaffold20537 |
77649 |
77714 |
+ |
(TGTTTA)n |
Simple_repeat |
| scaffold20537 |
77916 |
78302 |
+ |
RS1221 |
Unspecified |
| scaffold20537 |
78924 |
78960 |
+ |
A-rich |
Low_complexity |
| scaffold20537 |
78991 |
79022 |
+ |
(T)n |
Simple_repeat |
| scaffold20537 |
79020 |
79168 |
- |
PL617 |
Unspecified |
| scaffold20537 |
79788 |
80016 |
+ |
RS1221 |
Unspecified |
| scaffold20537 |
80424 |
80509 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold20537 |
80622 |
80641 |
+ |
(A)n |
Simple_repeat |
| scaffold20537 |
80820 |
80843 |
+ |
(T)n |
Simple_repeat |
| scaffold20537 |
80943 |
81255 |
+ |
RS712 |
Unspecified |
| scaffold20537 |
81255 |
82667 |
+ |
RS1900 |
Unspecified |
| scaffold20537 |
83202 |
83252 |
- |
Gypsy-23_ST-LTR |
LTR/Gypsy |
| scaffold20537 |
83593 |
83628 |
+ |
Gypsy-72_GM-I |
LTR/Gypsy |
| scaffold20537 |
83718 |
83828 |
+ |
PL673 |
Unspecified |
| scaffold20537 |
83827 |
84197 |
+ |
RS432 |
Unspecified |
| scaffold20537 |
84363 |
84575 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold20537 |
85033 |
85536 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold20537 |
85506 |
86123 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold20537 |
86748 |
87526 |
- |
RS157 |
Unspecified |
| scaffold20537 |
89980 |
90276 |
+ |
RS155 |
Unspecified |
| scaffold20537 |
90298 |
90350 |
+ |
(TTTCAG)n |
Simple_repeat |
| scaffold20537 |
90416 |
90448 |
+ |
(TTTCTA)n |
Simple_repeat |
| scaffold20537 |
91483 |
91627 |
+ |
Athila6B_I-int |
LTR/Gypsy |
| scaffold20537 |
92116 |
92208 |
+ |
RS1028 |
Unspecified |
| scaffold20537 |
92226 |
92734 |
+ |
RS10932 |
Unspecified |
| scaffold20537 |
93041 |
93130 |
+ |
(ACC)n |
Simple_repeat |
| scaffold20537 |
93161 |
93536 |
+ |
PL877 |
Unspecified |
| scaffold20537 |
93615 |
94323 |
- |
PL124 |
Unspecified |
| scaffold20537 |
95243 |
96098 |
- |
PL956 |
Unspecified |
| scaffold20537 |
96682 |
96719 |
+ |
A-rich |
Low_complexity |
| scaffold20537 |
96746 |
97034 |
+ |
PL947 |
Unspecified |
| scaffold20537 |
100052 |
100089 |
+ |
(CAACTCAAG)n |
Simple_repeat |
| scaffold20537 |
100103 |
100127 |
+ |
(AGA)n |
Simple_repeat |
| scaffold20537 |
100302 |
100368 |
+ |
A-rich |
Low_complexity |
| scaffold20537 |
100524 |
101606 |
+ |
gypsy |
gypsy(TransposonPSI) |