scaffold21309 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold21309 |
1 |
1216 |
+ |
RS4112 |
Unspecified |
| scaffold21309 |
1276 |
1471 |
+ |
RS11579 |
Unspecified |
| scaffold21309 |
1466 |
2483 |
+ |
RS11579 |
Unspecified |
| scaffold21309 |
3197 |
3321 |
- |
RS4586 |
Unspecified |
| scaffold21309 |
6254 |
6299 |
+ |
(TA)n |
Simple_repeat |
| scaffold21309 |
6419 |
6480 |
- |
PL58 |
Unspecified |
| scaffold21309 |
7148 |
7171 |
+ |
(AT)n |
Simple_repeat |
| scaffold21309 |
8243 |
8318 |
+ |
RS700 |
Unspecified |
| scaffold21309 |
8690 |
8714 |
+ |
(TA)n |
Simple_repeat |
| scaffold21309 |
9122 |
9164 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold21309 |
9165 |
9316 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold21309 |
9340 |
9410 |
- |
RS347 |
Unspecified |
| scaffold21309 |
9653 |
9744 |
+ |
(ATA)n |
Simple_repeat |
| scaffold21309 |
9931 |
10108 |
+ |
(TAA)n |
Simple_repeat |
| scaffold21309 |
10083 |
10108 |
+ |
(TAA)n |
Simple_repeat |
| scaffold21309 |
11234 |
11848 |
+ |
hAT |
hAT(TransposonPSI) |
| scaffold21309 |
11234 |
11890 |
+ |
hAT |
hAT(TransposonPSI) |
| scaffold21309 |
11783 |
11824 |
+ |
hAT-21_ZM |
DNA/hAT-Ac |
| scaffold21309 |
11783 |
11890 |
+ |
hAT-21_ZM |
DNA/hAT-Ac |
| scaffold21309 |
11817 |
12245 |
+ |
hAT |
hAT(TransposonPSI) |
| scaffold21309 |
11856 |
12245 |
+ |
hAT |
hAT(TransposonPSI) |
| scaffold21309 |
11922 |
12173 |
+ |
HAT-9_Mad |
DNA/hAT-Ac |
| scaffold21309 |
12238 |
13235 |
- |
PL678 |
Unspecified |
| scaffold21309 |
13419 |
13470 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold21309 |
14041 |
14887 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold21309 |
16425 |
17203 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold21309 |
18081 |
18109 |
+ |
GA-rich |
Low_complexity |
| scaffold21309 |
18920 |
18967 |
+ |
A-rich |
Low_complexity |
| scaffold21309 |
19078 |
19110 |
+ |
(CATCTT)n |
Simple_repeat |
| scaffold21309 |
20099 |
20675 |
- |
PL678 |
Unspecified |
| scaffold21309 |
21056 |
21107 |
+ |
(TAT)n |
Simple_repeat |
| scaffold21309 |
21892 |
22003 |
- |
PL460 |
Unspecified |
| scaffold21309 |
22077 |
22568 |
+ |
hAT |
hAT(TransposonPSI) |
| scaffold21309 |
22571 |
22789 |
+ |
hAT |
hAT(TransposonPSI) |
| scaffold21309 |
22588 |
22741 |
+ |
HAT-16_Mad |
DNA/hAT-Ac |
| scaffold21309 |
23345 |
23468 |
- |
RS9911 |
Unspecified |
| scaffold21309 |
24762 |
24780 |
+ |
(TAA)n |
Simple_repeat |
| scaffold21309 |
24922 |
25150 |
- |
RS10163 |
Unspecified |
| scaffold21309 |
25042 |
25221 |
- |
RS5540 |
Unspecified |
| scaffold21309 |
25314 |
25350 |
+ |
RS3203 |
Unspecified |
| scaffold21309 |
25853 |
25961 |
+ |
RS3203 |
Unspecified |
| scaffold21309 |
26265 |
26293 |
+ |
(TGT)n |
Simple_repeat |
| scaffold21309 |
26315 |
26340 |
+ |
(A)n |
Simple_repeat |
| scaffold21309 |
26478 |
26507 |
+ |
(T)n |
Simple_repeat |
| scaffold21309 |
26550 |
26650 |
+ |
(AATTAAT)n |
Simple_repeat |
| scaffold21309 |
26753 |
26884 |
+ |
RS3203 |
Unspecified |
| scaffold21309 |
27100 |
27157 |
- |
SINE2-1_STu |
SINE/tRNA |
| scaffold21309 |
27163 |
27261 |
+ |
RS3203 |
Unspecified |
| scaffold21309 |
27237 |
27301 |
+ |
PL296 |
Unspecified |
| scaffold21309 |
27404 |
27433 |
+ |
(TTAAA)n |
Simple_repeat |
| scaffold21309 |
27435 |
28009 |
+ |
PL8 |
Unspecified |
| scaffold21309 |
28027 |
28156 |
- |
RS2064 |
Unspecified |
| scaffold21309 |
28176 |
28222 |
+ |
(TCT)n |
Simple_repeat |
| scaffold21309 |
28223 |
28323 |
+ |
ATCopia24I |
LTR/Copia |
| scaffold21309 |
28238 |
28338 |
+ |
(CAT)n |
Simple_repeat |
| scaffold21309 |
28559 |
28592 |
+ |
(TAATTG)n |
Simple_repeat |
| scaffold21309 |
29731 |
29788 |
+ |
(TTTTTTC)n |
Simple_repeat |
| scaffold21309 |
30175 |
30214 |
- |
CINFUL2_ZM-int |
LTR/Gypsy |
| scaffold21309 |
31115 |
31179 |
+ |
(A)n |
Simple_repeat |
| scaffold21309 |
32694 |
32727 |
+ |
(TT)n |
Simple_repeat |
| scaffold21309 |
34717 |
34746 |
+ |
(A)n |
Simple_repeat |
| scaffold21309 |
36588 |
36624 |
+ |
(T)n |
Simple_repeat |
| scaffold21309 |
38239 |
38257 |
+ |
(A)n |
Simple_repeat |
| scaffold21309 |
38855 |
38908 |
+ |
(AGTCAA)n |
Simple_repeat |
| scaffold21309 |
39130 |
39881 |
+ |
RS494 |
Unspecified |
| scaffold21309 |
39226 |
39948 |
- |
PL526 |
Unspecified |
| scaffold21309 |
40681 |
40875 |
- |
RS2413 |
Unspecified |
| scaffold21309 |
40877 |
41313 |
+ |
RS3795 |
Unspecified |
| scaffold21309 |
41608 |
41663 |
+ |
A-rich |
Low_complexity |
| scaffold21309 |
43248 |
43281 |
+ |
(T)n |
Simple_repeat |
| scaffold21309 |
43975 |
44010 |
+ |
(T)n |
Simple_repeat |
| scaffold21309 |
44013 |
44063 |
+ |
A-rich |
Low_complexity |
| scaffold21309 |
44282 |
44320 |
+ |
(CACCAT)n |
Simple_repeat |
| scaffold21309 |
44772 |
44794 |
+ |
(CAG)n |
Simple_repeat |
| scaffold21309 |
44917 |
44948 |
+ |
(TCG)n |
Simple_repeat |
| scaffold21309 |
45999 |
46061 |
+ |
A-rich |
Low_complexity |
| scaffold21309 |
46100 |
46162 |
+ |
A-rich |
Low_complexity |
| scaffold21309 |
46445 |
46522 |
+ |
A-rich |
Low_complexity |
| scaffold21309 |
47071 |
49904 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold21309 |
50170 |
50777 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold21309 |
51368 |
51401 |
+ |
(TTG)n |
Simple_repeat |
| scaffold21309 |
51403 |
51450 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold21309 |
52102 |
52168 |
+ |
(ACA)n |
Simple_repeat |
| scaffold21309 |
52102 |
53738 |
+ |
(ACA)n |
Simple_repeat |
| scaffold21309 |
52150 |
53738 |
+ |
RS211 |
Unspecified |
| scaffold21309 |
53741 |
55132 |
- |
Gypsy-29_SB-I |
LTR/Gypsy |
| scaffold21309 |
55334 |
56674 |
- |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold21309 |
57090 |
57188 |
- |
RIRE8A_I-int |
LTR/Gypsy |
| scaffold21309 |
58711 |
58744 |
+ |
(A)n |
Simple_repeat |
| scaffold21309 |
58870 |
58936 |
+ |
(ACA)n |
Simple_repeat |
| scaffold21309 |
58916 |
58964 |
+ |
(CAAC)n |
Simple_repeat |
| scaffold21309 |
61492 |
61536 |
+ |
A-rich |
Low_complexity |
| scaffold21309 |
62000 |
62055 |
+ |
A-rich |
Low_complexity |
| scaffold21309 |
62936 |
63049 |
+ |
RS320 |
Unspecified |
| scaffold21309 |
63310 |
63481 |
- |
RS3053 |
Unspecified |
| scaffold21309 |
63882 |
63944 |
+ |
(TTGATTA)n |
Simple_repeat |
| scaffold21309 |
64088 |
64711 |
+ |
PL541 |
Unspecified |
| scaffold21309 |
64710 |
64843 |
- |
PL707 |
Unspecified |
| scaffold21309 |
65005 |
65036 |
+ |
(AAACTA)n |
Simple_repeat |
| scaffold21309 |
65182 |
65503 |
- |
RS1110 |
Unspecified |
| scaffold21309 |
66567 |
66616 |
+ |
A-rich |
Low_complexity |
| scaffold21309 |
66777 |
66956 |
- |
RS38 |
Unspecified |
| scaffold21309 |
67428 |
67464 |
+ |
(TTT)n |
Simple_repeat |
| scaffold21309 |
67741 |
67790 |
+ |
(ATT)n |
Simple_repeat |
| scaffold21309 |
68130 |
68497 |
+ |
RS614 |
Unspecified |
| scaffold21309 |
69105 |
69147 |
+ |
A-rich |
Low_complexity |
| scaffold21309 |
69273 |
69322 |
+ |
A-rich |
Low_complexity |
| scaffold21309 |
69388 |
69428 |
+ |
(TGAATAA)n |
Simple_repeat |
| scaffold21309 |
70328 |
70458 |
+ |
(A)n |
Simple_repeat |
| scaffold21309 |
70329 |
70432 |
- |
RS750 |
Unspecified |
| scaffold21309 |
70440 |
70458 |
+ |
(A)n |
Simple_repeat |
| scaffold21309 |
70579 |
70803 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold21309 |
72616 |
72672 |
+ |
(TTCT)n |
Simple_repeat |
| scaffold21309 |
74675 |
75156 |
+ |
RS527 |
Unspecified |
| scaffold21309 |
75743 |
75847 |
+ |
RS12254 |
Unspecified |
| scaffold21309 |
75757 |
75988 |
+ |
RS18 |
Unspecified |