scaffold22183 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold22183 |
196 |
2036 |
- |
RIRE1_I-int |
LTR/Copia |
| scaffold22183 |
1545 |
1598 |
+ |
A-rich |
Low_complexity |
| scaffold22183 |
1890 |
1968 |
+ |
(TGG)n |
Simple_repeat |
| scaffold22183 |
1990 |
2105 |
+ |
(ATGA)n |
Simple_repeat |
| scaffold22183 |
1990 |
2536 |
+ |
(ATGA)n |
Simple_repeat |
| scaffold22183 |
2070 |
2536 |
- |
PL425 |
Unspecified |
| scaffold22183 |
2537 |
3329 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold22183 |
3457 |
3639 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold22183 |
4949 |
6592 |
- |
RS260 |
Unspecified |
| scaffold22183 |
6595 |
7305 |
- |
PL530 |
Unspecified |
| scaffold22183 |
7299 |
7881 |
+ |
RS1419 |
Unspecified |
| scaffold22183 |
7883 |
8178 |
+ |
PL456 |
Unspecified |
| scaffold22183 |
8220 |
8787 |
+ |
PL5 |
Unspecified |
| scaffold22183 |
9827 |
10260 |
- |
RS1207 |
Unspecified |
| scaffold22183 |
10708 |
10752 |
+ |
(CATAAG)n |
Simple_repeat |
| scaffold22183 |
11591 |
11642 |
+ |
(CATA)n |
Simple_repeat |
| scaffold22183 |
11850 |
12110 |
- |
RS12409 |
Unspecified |
| scaffold22183 |
11922 |
12199 |
+ |
RS1060 |
Unspecified |
| scaffold22183 |
12542 |
12591 |
+ |
(AACACAA)n |
Simple_repeat |
| scaffold22183 |
13523 |
13573 |
+ |
(CACAA)n |
Simple_repeat |
| scaffold22183 |
13624 |
13851 |
+ |
RS1025 |
Unspecified |
| scaffold22183 |
14259 |
14755 |
+ |
RS151 |
Unspecified |
| scaffold22183 |
14515 |
15046 |
+ |
RS357 |
Unspecified |
| scaffold22183 |
15196 |
15230 |
+ |
(CACAAG)n |
Simple_repeat |
| scaffold22183 |
16640 |
16777 |
- |
PL608 |
Unspecified |
| scaffold22183 |
16810 |
17942 |
+ |
RS655 |
Unspecified |
| scaffold22183 |
17966 |
18343 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold22183 |
18439 |
18463 |
+ |
(T)n |
Simple_repeat |
| scaffold22183 |
18649 |
19159 |
+ |
PL368 |
Unspecified |
| scaffold22183 |
19112 |
19329 |
- |
PL368 |
Unspecified |
| scaffold22183 |
19626 |
19661 |
+ |
(TTG)n |
Simple_repeat |
| scaffold22183 |
19734 |
19805 |
+ |
(GTT)n |
Simple_repeat |
| scaffold22183 |
19891 |
20137 |
- |
RS1833 |
Unspecified |
| scaffold22183 |
20122 |
20398 |
- |
RS279 |
Unspecified |
| scaffold22183 |
21599 |
21679 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold22183 |
21823 |
21844 |
+ |
(T)n |
Simple_repeat |
| scaffold22183 |
21845 |
21866 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold22183 |
22376 |
22568 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold22183 |
22376 |
22613 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold22183 |
22549 |
22613 |
+ |
RS17 |
Unspecified |
| scaffold22183 |
22842 |
22884 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold22183 |
23004 |
23029 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold22183 |
23073 |
23110 |
+ |
(T)n |
Simple_repeat |
| scaffold22183 |
23112 |
23360 |
- |
PL688 |
Unspecified |
| scaffold22183 |
23999 |
24194 |
- |
RS3876 |
Unspecified |
| scaffold22183 |
24225 |
24252 |
+ |
(T)n |
Simple_repeat |
| scaffold22183 |
24576 |
24635 |
+ |
A-rich |
Low_complexity |
| scaffold22183 |
24916 |
25042 |
+ |
PL281 |
Unspecified |
| scaffold22183 |
25864 |
25910 |
+ |
(TTA)n |
Simple_repeat |
| scaffold22183 |
26658 |
26698 |
+ |
A-rich |
Low_complexity |
| scaffold22183 |
26897 |
26959 |
+ |
(ATT)n |
Simple_repeat |
| scaffold22183 |
27607 |
27641 |
+ |
(AATTTG)n |
Simple_repeat |
| scaffold22183 |
27642 |
27652 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold22183 |
27653 |
27674 |
+ |
(TTTATAA)n |
Simple_repeat |
| scaffold22183 |
28346 |
28478 |
+ |
RS10427 |
Unspecified |
| scaffold22183 |
29752 |
29784 |
+ |
(GAA)n |
Simple_repeat |
| scaffold22183 |
29929 |
30174 |
+ |
RS3707 |
Unspecified |
| scaffold22183 |
30306 |
32194 |
- |
RS420 |
Unspecified |
| scaffold22183 |
31445 |
32449 |
- |
PL891 |
Unspecified |
| scaffold22183 |
32594 |
32630 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold22183 |
32721 |
32927 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold22183 |
33074 |
33262 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold22183 |
33418 |
33459 |
+ |
(GTTT)n |
Simple_repeat |
| scaffold22183 |
33767 |
33943 |
- |
RS360 |
Unspecified |
| scaffold22183 |
33934 |
34155 |
+ |
RS13321 |
Unspecified |
| scaffold22183 |
34701 |
37873 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold22183 |
39166 |
39207 |
+ |
(TATAAC)n |
Simple_repeat |
| scaffold22183 |
39209 |
39676 |
+ |
RS2443 |
Unspecified |
| scaffold22183 |
39338 |
39746 |
+ |
RS7308 |
Unspecified |
| scaffold22183 |
41905 |
41957 |
+ |
(TTATA)n |
Simple_repeat |
| scaffold22183 |
42123 |
42233 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold22183 |
43723 |
44048 |
+ |
RS254 |
Unspecified |
| scaffold22183 |
44054 |
44890 |
- |
GmCOPIA10_I-int |
LTR/Copia |
| scaffold22183 |
45026 |
45386 |
- |
GmCOPIA10_I-int |
LTR/Copia |
| scaffold22183 |
45410 |
46274 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold22183 |
45528 |
46274 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold22183 |
46275 |
47642 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold22183 |
46675 |
46696 |
+ |
(TCA)n |
Simple_repeat |
| scaffold22183 |
46801 |
46853 |
- |
Gypsy-25_ST-I |
LTR/Gypsy |
| scaffold22183 |
47094 |
47471 |
- |
Copia-38_ST-I |
LTR/Copia |
| scaffold22183 |
47709 |
47831 |
- |
Copia-36_BD-I |
LTR/Copia |
| scaffold22183 |
48508 |
49186 |
- |
RS804 |
Unspecified |
| scaffold22183 |
49391 |
49417 |
+ |
(AAAC)n |
Simple_repeat |
| scaffold22183 |
50326 |
50503 |
- |
Copia2-LTR_VC |
Satellite |
| scaffold22183 |
50643 |
50714 |
+ |
(AC)n |
Simple_repeat |
| scaffold22183 |
51479 |
51545 |
- |
Gypsy-193_ZM-I |
LTR/Gypsy |
| scaffold22183 |
52803 |
53797 |
+ |
RS168 |
Unspecified |
| scaffold22183 |
54378 |
54482 |
- |
Copia-4_SL-LTR |
LTR/Copia |
| scaffold22183 |
55219 |
55290 |
- |
Gypsy-193_ZM-I |
LTR/Gypsy |
| scaffold22183 |
55677 |
56208 |
+ |
RS357 |
Unspecified |
| scaffold22183 |
56357 |
56391 |
+ |
(CACAAG)n |
Simple_repeat |
| scaffold22183 |
57173 |
57208 |
+ |
(ACGAAAC)n |
Simple_repeat |
| scaffold22183 |
61517 |
61637 |
+ |
(TTG)n |
Simple_repeat |
| scaffold22183 |
61717 |
61782 |
+ |
(GTT)n |
Simple_repeat |
| scaffold22183 |
61868 |
62213 |
- |
Gypsy-3_PD-I |
LTR/Gypsy |
| scaffold22183 |
62104 |
62213 |
- |
Gypsy-3_PD-I |
LTR/Gypsy |
| scaffold22183 |
62844 |
62878 |
+ |
TPN1_IN |
DNA/CMC-EnSpm |
| scaffold22183 |
63089 |
63250 |
+ |
RS121 |
Unspecified |
| scaffold22183 |
63109 |
63250 |
- |
RS1200 |
Unspecified |
| scaffold22183 |
63514 |
64498 |
- |
PL670 |
Unspecified |
| scaffold22183 |
64453 |
65666 |
+ |
PL933 |
Unspecified |
| scaffold22183 |
69032 |
69129 |
+ |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold22183 |
69257 |
69289 |
+ |
(TTCGAC)n |
Simple_repeat |
| scaffold22183 |
69803 |
70138 |
+ |
RS5888 |
Unspecified |
| scaffold22183 |
70139 |
70386 |
+ |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold22183 |
71488 |
72606 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold22183 |
71497 |
72509 |
+ |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold22183 |
72884 |
73829 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold22183 |
74538 |
74601 |
+ |
(CAATAGT)n |
Simple_repeat |
| scaffold22183 |
74824 |
74859 |
+ |
(T)n |
Simple_repeat |
| scaffold22183 |
78718 |
78742 |
+ |
(T)n |
Simple_repeat |
| scaffold22183 |
79074 |
79952 |
+ |
PL530 |
Unspecified |
| scaffold22183 |
79998 |
80038 |
+ |
(ACATTT)n |
Simple_repeat |
| scaffold22183 |
80131 |
80211 |
+ |
(TTACAC)n |
Simple_repeat |
| scaffold22183 |
80914 |
80948 |
+ |
(TCACATT)n |
Simple_repeat |
| scaffold22183 |
80994 |
81028 |
+ |
(TCACATT)n |
Simple_repeat |
| scaffold22183 |
81075 |
81109 |
+ |
(TCACATT)n |
Simple_repeat |
| scaffold22183 |
81341 |
81369 |
+ |
(TC)n |
Simple_repeat |
| scaffold22183 |
81370 |
81390 |
+ |
(AT)n |
Simple_repeat |
| scaffold22183 |
83088 |
83124 |
+ |
A-rich |
Low_complexity |
| scaffold22183 |
83693 |
84024 |
+ |
RS8518 |
Unspecified |
| scaffold22183 |
83938 |
84345 |
+ |
RS914 |
Unspecified |
| scaffold22183 |
84180 |
84496 |
- |
RS899 |
Unspecified |
| scaffold22183 |
84384 |
84662 |
- |
RS2903 |
Unspecified |
| scaffold22183 |
84673 |
85014 |
- |
RS607 |
Unspecified |
| scaffold22183 |
85018 |
85037 |
+ |
(A)n |
Simple_repeat |
| scaffold22183 |
85401 |
85463 |
+ |
A-rich |
Low_complexity |
| scaffold22183 |
85604 |
85763 |
+ |
(GAAGAAT)n |
Simple_repeat |
| scaffold22183 |
85730 |
85768 |
+ |
A-rich |
Low_complexity |
| scaffold22183 |
85817 |
85882 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold22183 |
85993 |
86026 |
+ |
(TATA)n |
Simple_repeat |
| scaffold22183 |
86339 |
86368 |
+ |
(TA)n |
Simple_repeat |
| scaffold22183 |
86697 |
86957 |
- |
RS365 |
Unspecified |
| scaffold22183 |
89444 |
89534 |
- |
Gypsy-2_Pru-I |
LTR/Gypsy |
| scaffold22183 |
91927 |
91972 |
+ |
(AATT)n |
Simple_repeat |
| scaffold22183 |
93656 |
93732 |
- |
Gypsy-9_Mad-I |
LTR/Gypsy |
| scaffold22183 |
94256 |
94330 |
+ |
(TTTTCC)n |
Simple_repeat |
| scaffold22183 |
94355 |
94375 |
+ |
(TGT)n |
Simple_repeat |
| scaffold22183 |
95524 |
95657 |
+ |
SABRINA2_TM-int |
LTR/Gypsy |
| scaffold22183 |
95596 |
95690 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold22183 |
96034 |
96634 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold22183 |
97076 |
97279 |
+ |
RS1033 |
Unspecified |
| scaffold22183 |
101160 |
101188 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold22183 |
102632 |
102651 |
+ |
(A)n |
Simple_repeat |
| scaffold22183 |
103163 |
103209 |
+ |
A-rich |
Low_complexity |
| scaffold22183 |
104110 |
104150 |
+ |
A-rich |
Low_complexity |
| scaffold22183 |
105082 |
105102 |
+ |
(C)n |
Simple_repeat |
| scaffold22183 |
106333 |
106689 |
+ |
RS8308 |
Unspecified |
| scaffold22183 |
107091 |
107177 |
+ |
(A)n |
Simple_repeat |
| scaffold22183 |
107931 |
108022 |
+ |
(TCAGTT)n |
Simple_repeat |
| scaffold22183 |
109709 |
109753 |
+ |
A-rich |
Low_complexity |
| scaffold22183 |
109972 |
109994 |
+ |
(CTT)n |
Simple_repeat |
| scaffold22183 |
110230 |
110251 |
+ |
(A)n |
Simple_repeat |
| scaffold22183 |
110318 |
110348 |
+ |
A-rich |
Low_complexity |
| scaffold22183 |
110349 |
110365 |
+ |
(AATACA)n |
Simple_repeat |
| scaffold22183 |
110613 |
110651 |
+ |
(T)n |
Simple_repeat |
| scaffold22183 |
110883 |
110951 |
- |
Gypsy-32_Mad-LTR |
LTR/Gypsy |
| scaffold22183 |
111344 |
111382 |
+ |
(TGTAT)n |
Simple_repeat |
| scaffold22183 |
114079 |
114131 |
+ |
(ATT)n |
Simple_repeat |
| scaffold22183 |
114807 |
114866 |
+ |
(AATACA)n |
Simple_repeat |
| scaffold22183 |
114850 |
114869 |
+ |
(ACT)n |
Simple_repeat |
| scaffold22183 |
115142 |
115371 |
+ |
PL494 |
Unspecified |
| scaffold22183 |
115951 |
116411 |
- |
PL350 |
Unspecified |
| scaffold22183 |
116879 |
116935 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold22183 |
117939 |
117971 |
+ |
(TGTTA)n |
Simple_repeat |
| scaffold22183 |
118562 |
118901 |
+ |
RS6924 |
Unspecified |
| scaffold22183 |
119548 |
120465 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold22183 |
121290 |
121353 |
+ |
Gypsy-13_TA-I |
LTR/Gypsy |
| scaffold22183 |
122021 |
122073 |
+ |
(ATTTTG)n |
Simple_repeat |
| scaffold22183 |
122332 |
122432 |
+ |
A-rich |
Low_complexity |
| scaffold22183 |
122633 |
122682 |
+ |
(AACATG)n |
Simple_repeat |
| scaffold22183 |
123386 |
123865 |
- |
PL350 |
Unspecified |
| scaffold22183 |
123913 |
123987 |
+ |
A-rich |
Low_complexity |
| scaffold22183 |
124457 |
124662 |
+ |
(TAAGTA)n |
Simple_repeat |
| scaffold22183 |
124667 |
124759 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold22183 |
124873 |
124925 |
- |
RS215 |
Unspecified |
| scaffold22183 |
125781 |
125952 |
- |
RS14541 |
Unspecified |
| scaffold22183 |
126474 |
126525 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold22183 |
126941 |
127705 |
+ |
RS405 |
Unspecified |
| scaffold22183 |
127696 |
128342 |
+ |
RS369 |
Unspecified |