scaffold2219 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold2219 |
165 |
260 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold2219 |
398 |
435 |
+ |
(AAGTTGT)n |
Simple_repeat |
| scaffold2219 |
513 |
577 |
- |
PL714 |
Unspecified |
| scaffold2219 |
560 |
643 |
+ |
RS658 |
Unspecified |
| scaffold2219 |
816 |
956 |
- |
RS16574 |
Unspecified |
| scaffold2219 |
1009 |
1046 |
+ |
(A)n |
Simple_repeat |
| scaffold2219 |
1009 |
1181 |
+ |
(A)n |
Simple_repeat |
| scaffold2219 |
1038 |
1181 |
- |
RS18022 |
Unspecified |
| scaffold2219 |
1249 |
1408 |
- |
RS10 |
Unspecified |
| scaffold2219 |
6987 |
7064 |
+ |
A-rich |
Low_complexity |
| scaffold2219 |
7360 |
7400 |
+ |
A-rich |
Low_complexity |
| scaffold2219 |
7464 |
7493 |
+ |
(TTG)n |
Simple_repeat |
| scaffold2219 |
7516 |
7565 |
+ |
(TGT)n |
Simple_repeat |
| scaffold2219 |
7649 |
7688 |
+ |
(CACCAA)n |
Simple_repeat |
| scaffold2219 |
7784 |
7803 |
+ |
(TTG)n |
Simple_repeat |
| scaffold2219 |
8093 |
8119 |
+ |
(ATTGA)n |
Simple_repeat |
| scaffold2219 |
8284 |
8313 |
+ |
(T)n |
Simple_repeat |
| scaffold2219 |
8431 |
8462 |
+ |
(T)n |
Simple_repeat |
| scaffold2219 |
9246 |
9393 |
- |
RS38 |
Unspecified |
| scaffold2219 |
9969 |
10173 |
+ |
RS6493 |
Unspecified |
| scaffold2219 |
10333 |
10350 |
+ |
(CTA)n |
Simple_repeat |
| scaffold2219 |
10495 |
10818 |
- |
RS11184 |
Unspecified |
| scaffold2219 |
11153 |
11956 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold2219 |
11153 |
12100 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold2219 |
11177 |
11442 |
+ |
Copia-97_STu-I |
LTR/Copia |
| scaffold2219 |
11603 |
11695 |
+ |
Copia-97_STu-I |
LTR/Copia |
| scaffold2219 |
11842 |
12100 |
+ |
RS11161 |
Unspecified |
| scaffold2219 |
12186 |
12470 |
+ |
Copia-97_STu-I |
LTR/Copia |
| scaffold2219 |
12759 |
13570 |
+ |
Copia-97_STu-I |
LTR/Copia |
| scaffold2219 |
13948 |
15502 |
+ |
Copia-97_STu-I |
LTR/Copia |
| scaffold2219 |
15549 |
15871 |
- |
RS11184 |
Unspecified |
| scaffold2219 |
16283 |
16354 |
+ |
RS1111 |
Unspecified |
| scaffold2219 |
16310 |
16496 |
+ |
RS921 |
Unspecified |
| scaffold2219 |
17628 |
17929 |
- |
RS1347 |
Unspecified |
| scaffold2219 |
17903 |
18225 |
- |
RS1220 |
Unspecified |
| scaffold2219 |
19299 |
19423 |
- |
RS4347 |
Unspecified |
| scaffold2219 |
19681 |
20256 |
+ |
RS7970 |
Unspecified |
| scaffold2219 |
20065 |
20350 |
+ |
RS14609 |
Unspecified |
| scaffold2219 |
20498 |
20570 |
- |
RS54 |
Unspecified |
| scaffold2219 |
20642 |
20810 |
+ |
RS5762 |
Unspecified |
| scaffold2219 |
20689 |
20826 |
+ |
RS9530 |
Unspecified |
| scaffold2219 |
20839 |
20900 |
+ |
RS2941 |
Unspecified |
| scaffold2219 |
20893 |
20929 |
- |
RS9530 |
Unspecified |
| scaffold2219 |
21121 |
21171 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold2219 |
21716 |
21737 |
+ |
(AATT)n |
Simple_repeat |
| scaffold2219 |
21908 |
22096 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold2219 |
22243 |
22428 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold2219 |
22441 |
22869 |
+ |
RS402 |
Unspecified |
| scaffold2219 |
24492 |
24508 |
+ |
(A)n |
Simple_repeat |
| scaffold2219 |
24666 |
24698 |
- |
RS38 |
Unspecified |
| scaffold2219 |
25320 |
25803 |
+ |
RS1152 |
Unspecified |
| scaffold2219 |
25995 |
26023 |
+ |
(T)n |
Simple_repeat |
| scaffold2219 |
26121 |
26421 |
+ |
RS1111 |
Unspecified |
| scaffold2219 |
27187 |
27548 |
- |
RS3132 |
Unspecified |
| scaffold2219 |
27561 |
29264 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold2219 |
28048 |
28883 |
- |
MUDRAVI2 |
DNA/MULE-MuDR |
| scaffold2219 |
30190 |
30402 |
+ |
RS3132 |
Unspecified |
| scaffold2219 |
30481 |
30878 |
- |
RS724 |
Unspecified |
| scaffold2219 |
31248 |
31803 |
+ |
RS214 |
Unspecified |
| scaffold2219 |
31597 |
32049 |
+ |
RS831 |
Unspecified |
| scaffold2219 |
31943 |
32184 |
+ |
RS1111 |
Unspecified |
| scaffold2219 |
32384 |
32450 |
+ |
RS214 |
Unspecified |
| scaffold2219 |
32572 |
32644 |
+ |
(TTC)n |
Simple_repeat |
| scaffold2219 |
32776 |
33248 |
- |
RS3286 |
Unspecified |
| scaffold2219 |
33581 |
34155 |
- |
RS1713 |
Unspecified |
| scaffold2219 |
34416 |
34597 |
+ |
PL158 |
Unspecified |
| scaffold2219 |
35818 |
35925 |
- |
RS4347 |
Unspecified |
| scaffold2219 |
36195 |
36772 |
+ |
RS7970 |
Unspecified |
| scaffold2219 |
36579 |
36866 |
+ |
RS14609 |
Unspecified |
| scaffold2219 |
37011 |
37253 |
+ |
RS4 |
Unspecified |
| scaffold2219 |
38284 |
38545 |
+ |
RS365 |
Unspecified |
| scaffold2219 |
39166 |
39192 |
+ |
(T)n |
Simple_repeat |
| scaffold2219 |
39502 |
39568 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold2219 |
39703 |
39725 |
+ |
(A)n |
Simple_repeat |
| scaffold2219 |
40395 |
40477 |
+ |
A-rich |
Low_complexity |
| scaffold2219 |
40649 |
40760 |
- |
Copia-35_GM-LTR |
LTR/Copia |
| scaffold2219 |
41103 |
41346 |
+ |
RS8361 |
Unspecified |
| scaffold2219 |
42005 |
42225 |
+ |
RS183 |
Unspecified |
| scaffold2219 |
45979 |
46358 |
- |
PL664 |
Unspecified |
| scaffold2219 |
46837 |
47553 |
- |
L1-16_Mad |
LINE/L1 |
| scaffold2219 |
47607 |
47625 |
+ |
(TAT)n |
Simple_repeat |
| scaffold2219 |
47773 |
47791 |
+ |
(A)n |
Simple_repeat |
| scaffold2219 |
47808 |
47847 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold2219 |
48022 |
48064 |
+ |
(TA)n |
Simple_repeat |
| scaffold2219 |
48203 |
48389 |
+ |
PL470 |
Unspecified |
| scaffold2219 |
48604 |
48698 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold2219 |
48723 |
48759 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold2219 |
49126 |
49352 |
+ |
RS549 |
Unspecified |
| scaffold2219 |
49703 |
49745 |
+ |
(T)n |
Simple_repeat |
| scaffold2219 |
49797 |
49847 |
+ |
(CCA)n |
Simple_repeat |
| scaffold2219 |
50236 |
50439 |
- |
PL699 |
Unspecified |
| scaffold2219 |
50438 |
50625 |
- |
RS1829 |
Unspecified |
| scaffold2219 |
50443 |
50642 |
- |
PL741 |
Unspecified |
| scaffold2219 |
52468 |
53134 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold2219 |
54019 |
54043 |
+ |
(T)n |
Simple_repeat |
| scaffold2219 |
54279 |
54358 |
+ |
A-rich |
Low_complexity |
| scaffold2219 |
55615 |
55649 |
+ |
(ACT)n |
Simple_repeat |
| scaffold2219 |
55851 |
55877 |
+ |
(T)n |
Simple_repeat |
| scaffold2219 |
56018 |
56155 |
+ |
RS13189 |
Unspecified |
| scaffold2219 |
57172 |
57612 |
- |
RS2819 |
Unspecified |
| scaffold2219 |
58366 |
58563 |
+ |
(TTATAC)n |
Simple_repeat |
| scaffold2219 |
59068 |
59129 |
+ |
(TATT)n |
Simple_repeat |
| scaffold2219 |
59545 |
59590 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold2219 |
60515 |
60593 |
+ |
(TGTAA)n |
Simple_repeat |
| scaffold2219 |
60980 |
61025 |
+ |
A-rich |
Low_complexity |
| scaffold2219 |
61596 |
62201 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold2219 |
61662 |
62070 |
- |
L1-5_STu |
LINE/L1 |
| scaffold2219 |
62618 |
62696 |
+ |
(TCACAT)n |
Simple_repeat |
| scaffold2219 |
64146 |
64218 |
+ |
(TGT)n |
Simple_repeat |
| scaffold2219 |
64426 |
64492 |
+ |
(TTGTTT)n |
Simple_repeat |
| scaffold2219 |
64687 |
65226 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold2219 |
64690 |
64928 |
- |
L1-1_GM |
LINE/L1 |
| scaffold2219 |
65844 |
65891 |
+ |
(ATGTATA)n |
Simple_repeat |
| scaffold2219 |
66355 |
67229 |
+ |
RS60 |
Unspecified |
| scaffold2219 |
68109 |
68759 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold2219 |
68151 |
68477 |
+ |
Copia-105_GM-I |
LTR/Copia |
| scaffold2219 |
69075 |
69947 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold2219 |
70155 |
70591 |
+ |
TORTL1 |
LTR/Copia |
| scaffold2219 |
70620 |
71485 |
+ |
Copia-68_GM-I |
LTR/Copia |
| scaffold2219 |
71854 |
72325 |
+ |
Copia-38_ST-I |
LTR/Copia |
| scaffold2219 |
72339 |
73327 |
+ |
GmCOPIA10_I-int |
LTR/Copia |
| scaffold2219 |
73872 |
73913 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold2219 |
74251 |
74321 |
+ |
A-rich |
Low_complexity |
| scaffold2219 |
74349 |
74771 |
- |
PL580 |
Unspecified |
| scaffold2219 |
77066 |
77107 |
+ |
Copia-10_TC-I |
LTR/Copia |
| scaffold2219 |
77362 |
77379 |
+ |
(T)n |
Simple_repeat |
| scaffold2219 |
78633 |
78788 |
+ |
Copia-10_TC-I |
LTR/Copia |
| scaffold2219 |
78964 |
79037 |
+ |
(TATAATA)n |
Simple_repeat |
| scaffold2219 |
79317 |
79349 |
+ |
(TATTAT)n |
Simple_repeat |
| scaffold2219 |
79684 |
79732 |
+ |
(A)n |
Simple_repeat |
| scaffold2219 |
80021 |
80048 |
+ |
(T)n |
Simple_repeat |
| scaffold2219 |
81013 |
81064 |
+ |
(TAATTT)n |
Simple_repeat |
| scaffold2219 |
81228 |
81244 |
+ |
(A)n |
Simple_repeat |
| scaffold2219 |
81350 |
81417 |
+ |
A-rich |
Low_complexity |
| scaffold2219 |
81892 |
82187 |
- |
RS518 |
Unspecified |
| scaffold2219 |
84416 |
84537 |
- |
RS4347 |
Unspecified |
| scaffold2219 |
84641 |
85222 |
+ |
RS7970 |
Unspecified |
| scaffold2219 |
85029 |
85316 |
+ |
RS14609 |
Unspecified |
| scaffold2219 |
85585 |
85760 |
- |
RS1055 |
Unspecified |
| scaffold2219 |
86211 |
86268 |
+ |
(A)n |
Simple_repeat |
| scaffold2219 |
87210 |
87257 |
+ |
(A)n |
Simple_repeat |
| scaffold2219 |
88385 |
88448 |
+ |
(TTG)n |
Simple_repeat |
| scaffold2219 |
88449 |
88497 |
+ |
(GTT)n |
Simple_repeat |
| scaffold2219 |
88498 |
88575 |
+ |
(TTG)n |
Simple_repeat |
| scaffold2219 |
90534 |
90552 |
+ |
(T)n |
Simple_repeat |
| scaffold2219 |
91035 |
91627 |
- |
RS507 |
Unspecified |
| scaffold2219 |
91827 |
91871 |
+ |
(A)n |
Simple_repeat |
| scaffold2219 |
92050 |
92087 |
+ |
(A)n |
Simple_repeat |
| scaffold2219 |
93160 |
93192 |
+ |
A-rich |
Low_complexity |
| scaffold2219 |
93508 |
93537 |
+ |
(TTTCAA)n |
Simple_repeat |
| scaffold2219 |
93720 |
93827 |
- |
PL523 |
Unspecified |
| scaffold2219 |
94089 |
94150 |
+ |
(AACGGTT)n |
Simple_repeat |
| scaffold2219 |
94204 |
94247 |
+ |
A-rich |
Low_complexity |
| scaffold2219 |
94849 |
95026 |
- |
RS2054 |
Unspecified |
| scaffold2219 |
95408 |
95835 |
+ |
PL663 |
Unspecified |
| scaffold2219 |
95836 |
96323 |
+ |
RS330 |
Unspecified |
| scaffold2219 |
100740 |
100929 |
- |
Copia-15_GM-I |
LTR/Copia |
| scaffold2219 |
101806 |
101859 |
- |
Copia-89_VV-I |
LTR/Copia |
| scaffold2219 |
102325 |
102421 |
+ |
PL663 |
Unspecified |
| scaffold2219 |
102472 |
102602 |
+ |
RS5057 |
Unspecified |
| scaffold2219 |
102584 |
102818 |
+ |
PL663 |
Unspecified |
| scaffold2219 |
104769 |
104874 |
+ |
RS750 |
Unspecified |
| scaffold2219 |
104913 |
105184 |
- |
RS373 |
Unspecified |
| scaffold2219 |
105183 |
105277 |
- |
RS4475 |
Unspecified |
| scaffold2219 |
105299 |
105335 |
+ |
(TTGTAA)n |
Simple_repeat |
| scaffold2219 |
105903 |
105956 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold2219 |
106390 |
106663 |
+ |
RS342 |
Unspecified |
| scaffold2219 |
106933 |
107184 |
- |
RS9901 |
Unspecified |
| scaffold2219 |
107349 |
107403 |
+ |
HAT-14_Mad |
DNA/hAT-Tip100 |
| scaffold2219 |
108528 |
108656 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold2219 |
108726 |
108848 |
- |
RS170 |
Unspecified |
| scaffold2219 |
109224 |
109241 |
+ |
(T)n |
Simple_repeat |
| scaffold2219 |
109555 |
109660 |
- |
RS750 |
Unspecified |
| scaffold2219 |
109691 |
109757 |
+ |
RS239 |
Unspecified |
| scaffold2219 |
109904 |
109980 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold2219 |
110029 |
110082 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold2219 |
110446 |
110706 |
- |
RS1 |
Unspecified |
| scaffold2219 |
111309 |
111544 |
- |
PL529 |
Unspecified |
| scaffold2219 |
111578 |
111627 |
+ |
(ATTCAA)n |
Simple_repeat |
| scaffold2219 |
111771 |
112072 |
+ |
RS470 |
Unspecified |
| scaffold2219 |
111845 |
112384 |
+ |
(AT)n |
Simple_repeat |
| scaffold2219 |
112346 |
112384 |
+ |
(AT)n |
Simple_repeat |
| scaffold2219 |
114653 |
114784 |
+ |
(TA)n |
Simple_repeat |
| scaffold2219 |
114741 |
114784 |
+ |
(TA)n |
Simple_repeat |
| scaffold2219 |
114813 |
114840 |
+ |
(TAAA)n |
Simple_repeat |
| scaffold2219 |
115049 |
115688 |
- |
RS665 |
Unspecified |
| scaffold2219 |
115922 |
115965 |
+ |
(CTTTT)n |
Simple_repeat |
| scaffold2219 |
116117 |
116217 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold2219 |
116191 |
116296 |
- |
Copia-47_VV-I |
LTR/Copia |