scaffold2228 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold2228 |
908 |
1004 |
+ |
DEL_LH_I-int |
LTR/Gypsy |
| scaffold2228 |
1149 |
1200 |
+ |
GYPSODE1_LTR |
LTR/Gypsy |
| scaffold2228 |
1532 |
1610 |
+ |
RS37 |
Unspecified |
| scaffold2228 |
1545 |
1610 |
- |
RS434 |
Unspecified |
| scaffold2228 |
3142 |
3163 |
+ |
(T)n |
Simple_repeat |
| scaffold2228 |
3197 |
3278 |
- |
RS17927 |
Unspecified |
| scaffold2228 |
4869 |
4973 |
- |
RS17472 |
Unspecified |
| scaffold2228 |
6651 |
7138 |
- |
PL160 |
Unspecified |
| scaffold2228 |
7379 |
7495 |
+ |
RS3004 |
Unspecified |
| scaffold2228 |
7489 |
7553 |
+ |
(ATTATC)n |
Simple_repeat |
| scaffold2228 |
7782 |
7872 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold2228 |
8081 |
8114 |
+ |
(ATCAAT)n |
Simple_repeat |
| scaffold2228 |
8156 |
8185 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold2228 |
8558 |
8789 |
- |
RS376 |
Unspecified |
| scaffold2228 |
9063 |
9381 |
+ |
RS748 |
Unspecified |
| scaffold2228 |
9607 |
9650 |
+ |
(GTCGG)n |
Simple_repeat |
| scaffold2228 |
9651 |
9839 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold2228 |
10017 |
10095 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold2228 |
10096 |
10120 |
+ |
(GTCGG)n |
Simple_repeat |
| scaffold2228 |
10121 |
10279 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold2228 |
10932 |
10990 |
+ |
A-rich |
Low_complexity |
| scaffold2228 |
11080 |
11148 |
+ |
(AATTATC)n |
Simple_repeat |
| scaffold2228 |
12369 |
12397 |
+ |
(TTATC)n |
Simple_repeat |
| scaffold2228 |
12434 |
12571 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2228 |
16669 |
16697 |
+ |
(TTTAC)n |
Simple_repeat |
| scaffold2228 |
16793 |
16813 |
+ |
(T)n |
Simple_repeat |
| scaffold2228 |
17008 |
17652 |
- |
PL281 |
Unspecified |
| scaffold2228 |
17757 |
17855 |
- |
RS17472 |
Unspecified |
| scaffold2228 |
19256 |
19361 |
+ |
RS10221 |
Unspecified |
| scaffold2228 |
19603 |
19803 |
+ |
RS3004 |
Unspecified |
| scaffold2228 |
20400 |
20429 |
+ |
(GACAC)n |
Simple_repeat |
| scaffold2228 |
20461 |
20518 |
+ |
(ATGAGTG)n |
Simple_repeat |
| scaffold2228 |
20645 |
20678 |
+ |
(ATCAAT)n |
Simple_repeat |
| scaffold2228 |
20688 |
20730 |
+ |
PL856 |
Unspecified |
| scaffold2228 |
20695 |
20759 |
+ |
PL567 |
Unspecified |
| scaffold2228 |
20707 |
20822 |
+ |
PL773 |
Unspecified |
| scaffold2228 |
20919 |
21171 |
- |
RS898 |
Unspecified |
| scaffold2228 |
21052 |
21187 |
+ |
RS4042 |
Unspecified |
| scaffold2228 |
21410 |
21675 |
+ |
RS356 |
Unspecified |
| scaffold2228 |
21905 |
22105 |
- |
RS375 |
Unspecified |
| scaffold2228 |
22103 |
22196 |
- |
RS4475 |
Unspecified |
| scaffold2228 |
22196 |
22315 |
+ |
RS748 |
Unspecified |
| scaffold2228 |
23421 |
23449 |
+ |
(TTATC)n |
Simple_repeat |
| scaffold2228 |
23486 |
23520 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2228 |
24549 |
24580 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2228 |
24941 |
25094 |
+ |
RS9608 |
Unspecified |
| scaffold2228 |
25292 |
25340 |
+ |
(TTG)n |
Simple_repeat |
| scaffold2228 |
25341 |
25359 |
+ |
(AGT)n |
Simple_repeat |
| scaffold2228 |
25364 |
25424 |
+ |
(TTA)n |
Simple_repeat |
| scaffold2228 |
25669 |
25864 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold2228 |
25769 |
25864 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold2228 |
26047 |
26266 |
+ |
ATCOPIN_LTR |
LTR |
| scaffold2228 |
26073 |
26268 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold2228 |
26266 |
26443 |
- |
PL240 |
Unspecified |
| scaffold2228 |
26445 |
26516 |
- |
PL175 |
Unspecified |
| scaffold2228 |
27400 |
27458 |
+ |
A-rich |
Low_complexity |
| scaffold2228 |
27710 |
27973 |
- |
RS5713 |
Unspecified |
| scaffold2228 |
28962 |
28988 |
+ |
(T)n |
Simple_repeat |
| scaffold2228 |
29726 |
29776 |
+ |
RS1772 |
Unspecified |
| scaffold2228 |
30982 |
31636 |
+ |
Gypsy-72_GM-I |
LTR/Gypsy |
| scaffold2228 |
31712 |
31761 |
+ |
Gypsy-72_GM-I |
LTR/Gypsy |
| scaffold2228 |
31959 |
32005 |
+ |
RS1772 |
Unspecified |
| scaffold2228 |
32002 |
32158 |
+ |
RS1772 |
Unspecified |
| scaffold2228 |
34385 |
34551 |
+ |
RS778 |
Unspecified |
| scaffold2228 |
34456 |
34568 |
- |
RS9599 |
Unspecified |
| scaffold2228 |
34562 |
34675 |
+ |
(GCCCG)n |
Simple_repeat |
| scaffold2228 |
34703 |
34827 |
- |
MUMT |
DNA/MULE-MuDR |
| scaffold2228 |
34868 |
35090 |
- |
PL569 |
Unspecified |
| scaffold2228 |
35702 |
35723 |
+ |
(AGGA)n |
Simple_repeat |
| scaffold2228 |
36932 |
36959 |
+ |
(AAC)n |
Simple_repeat |
| scaffold2228 |
37489 |
37513 |
+ |
(AAC)n |
Simple_repeat |
| scaffold2228 |
41186 |
41300 |
+ |
Gypsy27-ZM_I-int |
LTR/Gypsy |
| scaffold2228 |
41379 |
41471 |
+ |
TWIFB1 |
DNA/hAT-Ac |
| scaffold2228 |
41397 |
41464 |
+ |
ATGP5A_I-int |
LTR/Gypsy |
| scaffold2228 |
41465 |
41492 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold2228 |
41765 |
41947 |
+ |
RS314 |
Unspecified |
| scaffold2228 |
41782 |
41919 |
+ |
RS1094 |
Unspecified |
| scaffold2228 |
41805 |
42007 |
+ |
PL827 |
Unspecified |
| scaffold2228 |
41923 |
42413 |
+ |
RS1268 |
Unspecified |
| scaffold2228 |
42382 |
42768 |
+ |
RS8469 |
Unspecified |
| scaffold2228 |
42992 |
43178 |
- |
RS7064 |
Unspecified |
| scaffold2228 |
43090 |
43567 |
+ |
RS1268 |
Unspecified |
| scaffold2228 |
44041 |
44344 |
+ |
RS9621 |
Unspecified |
| scaffold2228 |
45082 |
45854 |
- |
RS203 |
Unspecified |
| scaffold2228 |
46767 |
46827 |
+ |
PL455 |
Unspecified |
| scaffold2228 |
47222 |
47783 |
- |
PL188 |
Unspecified |
| scaffold2228 |
47784 |
47827 |
- |
RS1708 |
Unspecified |
| scaffold2228 |
48821 |
48981 |
- |
L1-4_VC |
LINE/L1 |
| scaffold2228 |
49227 |
49277 |
+ |
RS682 |
Unspecified |
| scaffold2228 |
49819 |
49824 |
+ |
(TTGTTA)n |
Simple_repeat |
| scaffold2228 |
49825 |
49854 |
+ |
(T)n |
Simple_repeat |
| scaffold2228 |
49855 |
49860 |
+ |
(TTGTTA)n |
Simple_repeat |
| scaffold2228 |
49941 |
49987 |
+ |
Gypsy-26_ST-I |
LTR/Gypsy |
| scaffold2228 |
50066 |
50110 |
+ |
(TAA)n |
Simple_repeat |
| scaffold2228 |
50148 |
50177 |
+ |
(A)n |
Simple_repeat |
| scaffold2228 |
50641 |
50911 |
- |
PL743 |
Unspecified |
| scaffold2228 |
51248 |
51272 |
+ |
(TA)n |
Simple_repeat |
| scaffold2228 |
51899 |
52060 |
+ |
(ATG)n |
Simple_repeat |
| scaffold2228 |
52531 |
52562 |
+ |
(TTATAT)n |
Simple_repeat |
| scaffold2228 |
53027 |
53094 |
+ |
(GATGAGAGGC)n |
Simple_repeat |
| scaffold2228 |
53591 |
54199 |
- |
RS1130 |
Unspecified |
| scaffold2228 |
53848 |
54281 |
+ |
RS9597 |
Unspecified |
| scaffold2228 |
54239 |
54577 |
+ |
RS11477 |
Unspecified |
| scaffold2228 |
54361 |
54716 |
+ |
RS2345 |
Unspecified |
| scaffold2228 |
54397 |
54829 |
+ |
RS1724 |
Unspecified |
| scaffold2228 |
55191 |
55498 |
- |
PL188 |
Unspecified |
| scaffold2228 |
55605 |
55729 |
- |
Copia-88_ST-LTR |
LTR/Copia |
| scaffold2228 |
55954 |
56496 |
+ |
RS426 |
Unspecified |
| scaffold2228 |
56576 |
56610 |
+ |
(T)n |
Simple_repeat |
| scaffold2228 |
57213 |
57354 |
- |
PL469 |
Unspecified |
| scaffold2228 |
58858 |
58886 |
+ |
(TA)n |
Simple_repeat |
| scaffold2228 |
58908 |
58984 |
+ |
(TTGCAA)n |
Simple_repeat |
| scaffold2228 |
59310 |
59334 |
+ |
(A)n |
Simple_repeat |
| scaffold2228 |
60147 |
60188 |
+ |
(TA)n |
Simple_repeat |
| scaffold2228 |
60280 |
60352 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold2228 |
63593 |
63699 |
- |
PL344 |
Unspecified |
| scaffold2228 |
63897 |
64068 |
- |
RS3580 |
Unspecified |