scaffold23040 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold23040 |
1 |
361 |
+ |
RS934 |
Unspecified |
| scaffold23040 |
456 |
599 |
- |
RS347 |
Unspecified |
| scaffold23040 |
760 |
1948 |
- |
Copia-37_GM-I |
LTR/Copia |
| scaffold23040 |
1319 |
1379 |
- |
Copia-101_Mad-I |
LTR/Copia |
| scaffold23040 |
2936 |
2982 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
3017 |
3035 |
+ |
(G)n |
Simple_repeat |
| scaffold23040 |
4108 |
4153 |
+ |
(TTTGTAT)n |
Simple_repeat |
| scaffold23040 |
4218 |
4271 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
4389 |
4515 |
+ |
RS1074 |
Unspecified |
| scaffold23040 |
4723 |
4904 |
- |
RS9664 |
Unspecified |
| scaffold23040 |
5171 |
5335 |
- |
RS5786 |
Unspecified |
| scaffold23040 |
5642 |
5844 |
- |
RS18 |
Unspecified |
| scaffold23040 |
6318 |
6369 |
+ |
(TTAGT)n |
Simple_repeat |
| scaffold23040 |
8480 |
8961 |
+ |
(TAG)n |
Simple_repeat |
| scaffold23040 |
8910 |
8961 |
+ |
(TAG)n |
Simple_repeat |
| scaffold23040 |
8960 |
9261 |
- |
RS50 |
Unspecified |
| scaffold23040 |
9213 |
9273 |
- |
PL265 |
Unspecified |
| scaffold23040 |
10053 |
10078 |
+ |
(A)n |
Simple_repeat |
| scaffold23040 |
11587 |
11643 |
+ |
(GAATT)n |
Simple_repeat |
| scaffold23040 |
12087 |
12112 |
+ |
(T)n |
Simple_repeat |
| scaffold23040 |
12150 |
12227 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
12582 |
12754 |
- |
RS915 |
Unspecified |
| scaffold23040 |
15776 |
15808 |
+ |
(TTCGA)n |
Simple_repeat |
| scaffold23040 |
15809 |
15819 |
+ |
(GTTCGA)n |
Simple_repeat |
| scaffold23040 |
16268 |
16303 |
+ |
(T)n |
Simple_repeat |
| scaffold23040 |
17559 |
18051 |
+ |
RS2032 |
Unspecified |
| scaffold23040 |
18545 |
18750 |
+ |
RS7516 |
Unspecified |
| scaffold23040 |
19125 |
19152 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
19245 |
19291 |
+ |
(T)n |
Simple_repeat |
| scaffold23040 |
20309 |
20680 |
+ |
RS16860 |
Unspecified |
| scaffold23040 |
21431 |
21449 |
+ |
(TA)n |
Simple_repeat |
| scaffold23040 |
21888 |
21961 |
+ |
(CAC)n |
Simple_repeat |
| scaffold23040 |
22027 |
22076 |
+ |
(ACC)n |
Simple_repeat |
| scaffold23040 |
22980 |
23176 |
- |
PL560 |
Unspecified |
| scaffold23040 |
23303 |
23821 |
- |
RS2105 |
Unspecified |
| scaffold23040 |
24441 |
25123 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold23040 |
27249 |
27962 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold23040 |
27954 |
28023 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold23040 |
28017 |
28219 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold23040 |
28216 |
29192 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold23040 |
29193 |
29613 |
- |
RS2105 |
Unspecified |
| scaffold23040 |
32223 |
32247 |
+ |
(ATTC)n |
Simple_repeat |
| scaffold23040 |
33495 |
33667 |
+ |
RS3637 |
Unspecified |
| scaffold23040 |
33761 |
33792 |
+ |
(T)n |
Simple_repeat |
| scaffold23040 |
33922 |
34075 |
+ |
RS17567 |
Unspecified |
| scaffold23040 |
34200 |
34278 |
+ |
(AATTG)n |
Simple_repeat |
| scaffold23040 |
34305 |
34333 |
+ |
(ACAA)n |
Simple_repeat |
| scaffold23040 |
34451 |
34569 |
- |
RS145 |
Unspecified |
| scaffold23040 |
34569 |
34657 |
- |
RS280 |
Unspecified |
| scaffold23040 |
34658 |
34950 |
- |
Copia-2_SL-I |
LTR/Copia |
| scaffold23040 |
34976 |
35084 |
- |
Copia-2_SL-LTR |
LTR/Copia |
| scaffold23040 |
35297 |
35645 |
+ |
Copia-2_SL-LTR |
LTR/Copia |
| scaffold23040 |
35970 |
35997 |
+ |
(T)n |
Simple_repeat |
| scaffold23040 |
36104 |
36140 |
+ |
(GAATT)n |
Simple_repeat |
| scaffold23040 |
36493 |
36703 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold23040 |
36728 |
36776 |
- |
PL774 |
Unspecified |
| scaffold23040 |
36758 |
37067 |
+ |
RS15580 |
Unspecified |
| scaffold23040 |
37188 |
37401 |
+ |
(GTCCAA)n |
Simple_repeat |
| scaffold23040 |
37363 |
37401 |
+ |
(GTCCAA)n |
Simple_repeat |
| scaffold23040 |
37504 |
37546 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
37596 |
37998 |
+ |
RS12988 |
Unspecified |
| scaffold23040 |
37689 |
38363 |
+ |
RS817 |
Unspecified |
| scaffold23040 |
38356 |
38556 |
+ |
RS1244 |
Unspecified |
| scaffold23040 |
40526 |
40557 |
+ |
(T)n |
Simple_repeat |
| scaffold23040 |
40687 |
40840 |
+ |
RS17567 |
Unspecified |
| scaffold23040 |
40965 |
41043 |
+ |
(AATTG)n |
Simple_repeat |
| scaffold23040 |
41070 |
41098 |
+ |
(ACAA)n |
Simple_repeat |
| scaffold23040 |
41216 |
41334 |
- |
RS145 |
Unspecified |
| scaffold23040 |
41334 |
41422 |
- |
RS280 |
Unspecified |
| scaffold23040 |
41423 |
41869 |
- |
Copia-2_SL-I |
LTR/Copia |
| scaffold23040 |
41993 |
42030 |
- |
Copia-26_GM-I |
LTR/Copia |
| scaffold23040 |
42065 |
42434 |
+ |
Copia-2_SL-LTR |
LTR/Copia |
| scaffold23040 |
42739 |
42763 |
+ |
(T)n |
Simple_repeat |
| scaffold23040 |
42867 |
42903 |
+ |
(GAATT)n |
Simple_repeat |
| scaffold23040 |
43262 |
43466 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold23040 |
43491 |
43539 |
- |
PL774 |
Unspecified |
| scaffold23040 |
43521 |
43830 |
+ |
RS15580 |
Unspecified |
| scaffold23040 |
43951 |
44171 |
+ |
(GTCCAA)n |
Simple_repeat |
| scaffold23040 |
44133 |
44171 |
+ |
(GTCCAA)n |
Simple_repeat |
| scaffold23040 |
44274 |
44316 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
44366 |
44768 |
+ |
RS12988 |
Unspecified |
| scaffold23040 |
44459 |
45133 |
+ |
RS817 |
Unspecified |
| scaffold23040 |
45126 |
45326 |
+ |
RS1244 |
Unspecified |
| scaffold23040 |
47259 |
47289 |
+ |
(T)n |
Simple_repeat |
| scaffold23040 |
47419 |
47572 |
+ |
RS17567 |
Unspecified |
| scaffold23040 |
47669 |
48323 |
- |
RS696 |
Unspecified |
| scaffold23040 |
47777 |
48391 |
- |
RS3318 |
Unspecified |
| scaffold23040 |
49734 |
49815 |
+ |
Gypsy-32_Mad-LTR |
LTR/Gypsy |
| scaffold23040 |
49816 |
49937 |
+ |
Copia-36_BD-I |
LTR/Copia |
| scaffold23040 |
50045 |
51421 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold23040 |
50308 |
50631 |
+ |
Copia-10_TC-I |
LTR/Copia |
| scaffold23040 |
50831 |
50896 |
+ |
Gypsy-201_ZM-I |
LTR/Gypsy |
| scaffold23040 |
51641 |
51751 |
- |
HAT-N8_Mad |
DNA/hAT-Tag1 |
| scaffold23040 |
51754 |
51944 |
- |
RS10269 |
Unspecified |
| scaffold23040 |
52209 |
52279 |
+ |
RS893 |
Unspecified |
| scaffold23040 |
52988 |
53018 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold23040 |
54657 |
54818 |
+ |
PL296 |
Unspecified |
| scaffold23040 |
54811 |
55267 |
- |
PL773 |
Unspecified |
| scaffold23040 |
55211 |
55280 |
+ |
RS2034 |
Unspecified |
| scaffold23040 |
55266 |
55783 |
+ |
(TAT)n |
Simple_repeat |
| scaffold23040 |
55694 |
55783 |
+ |
(TAT)n |
Simple_repeat |
| scaffold23040 |
56255 |
56520 |
- |
RS1943 |
Unspecified |
| scaffold23040 |
56515 |
56582 |
+ |
RS2663 |
Unspecified |
| scaffold23040 |
56616 |
56694 |
+ |
PL289 |
Unspecified |
| scaffold23040 |
56788 |
56824 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold23040 |
60690 |
60716 |
+ |
(CAAA)n |
Simple_repeat |
| scaffold23040 |
60797 |
60968 |
- |
RS573 |
Unspecified |
| scaffold23040 |
65733 |
66134 |
+ |
RS1337 |
Unspecified |
| scaffold23040 |
67176 |
67224 |
- |
RS18111 |
Unspecified |
| scaffold23040 |
67344 |
67378 |
+ |
(AAC)n |
Simple_repeat |
| scaffold23040 |
67487 |
67533 |
+ |
(AATA)n |
Simple_repeat |
| scaffold23040 |
67534 |
67571 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
67572 |
67589 |
+ |
(AATA)n |
Simple_repeat |
| scaffold23040 |
67588 |
67959 |
+ |
RS614 |
Unspecified |
| scaffold23040 |
68229 |
68248 |
+ |
(A)n |
Simple_repeat |
| scaffold23040 |
74036 |
74224 |
+ |
RS18243 |
Unspecified |
| scaffold23040 |
74391 |
74574 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold23040 |
76256 |
76292 |
- |
RS178 |
Unspecified |
| scaffold23040 |
76268 |
76307 |
+ |
RS15179 |
Unspecified |
| scaffold23040 |
77177 |
77204 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold23040 |
77225 |
77413 |
+ |
PL594 |
Unspecified |
| scaffold23040 |
77716 |
77740 |
+ |
(T)n |
Simple_repeat |
| scaffold23040 |
77742 |
78101 |
- |
RS8 |
Unspecified |
| scaffold23040 |
78226 |
78256 |
+ |
(TTCTT)n |
Simple_repeat |
| scaffold23040 |
78456 |
78474 |
- |
Gypsy-108_SB-I |
LTR/Gypsy |
| scaffold23040 |
78475 |
78553 |
+ |
hAT-9_SBi |
DNA/hAT-Tag1 |
| scaffold23040 |
78666 |
78710 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
78986 |
79068 |
+ |
(CCGTAT)n |
Simple_repeat |
| scaffold23040 |
79435 |
79699 |
+ |
RS356 |
Unspecified |
| scaffold23040 |
84385 |
84417 |
+ |
(TTG)n |
Simple_repeat |
| scaffold23040 |
84515 |
84538 |
+ |
(GTT)n |
Simple_repeat |
| scaffold23040 |
85516 |
85548 |
+ |
(TCTA)n |
Simple_repeat |
| scaffold23040 |
85570 |
85720 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold23040 |
85940 |
86174 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold23040 |
86671 |
86704 |
+ |
GA-rich |
Low_complexity |
| scaffold23040 |
87098 |
87185 |
- |
hAT-9_SBi |
DNA/hAT-Tag1 |
| scaffold23040 |
87403 |
87459 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold23040 |
87463 |
87617 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold23040 |
87618 |
87791 |
+ |
(CTGT)n |
Simple_repeat |
| scaffold23040 |
88055 |
88162 |
+ |
RS2017 |
Unspecified |
| scaffold23040 |
94488 |
94752 |
+ |
RS356 |
Unspecified |
| scaffold23040 |
95013 |
95324 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold23040 |
95294 |
95324 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold23040 |
97346 |
97429 |
+ |
RS883 |
Unspecified |
| scaffold23040 |
97458 |
97565 |
- |
RS64 |
Unspecified |
| scaffold23040 |
97819 |
97886 |
+ |
RS3923 |
Unspecified |
| scaffold23040 |
98558 |
98825 |
+ |
RS9964 |
Unspecified |
| scaffold23040 |
99044 |
99609 |
+ |
MUMT |
DNA/MULE-MuDR |
| scaffold23040 |
99125 |
99609 |
+ |
MUMT |
DNA/MULE-MuDR |
| scaffold23040 |
101077 |
101484 |
+ |
RS1922 |
Unspecified |
| scaffold23040 |
101592 |
101771 |
+ |
RS2497 |
Unspecified |
| scaffold23040 |
101637 |
101787 |
+ |
RS7588 |
Unspecified |
| scaffold23040 |
101801 |
101836 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
102039 |
102245 |
- |
RS9337 |
Unspecified |
| scaffold23040 |
102341 |
102508 |
+ |
(TA)n |
Simple_repeat |
| scaffold23040 |
102341 |
102372 |
+ |
(TA)n |
Simple_repeat |
| scaffold23040 |
102357 |
102508 |
- |
RS7560 |
Unspecified |
| scaffold23040 |
102642 |
102681 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold23040 |
102831 |
102920 |
+ |
(TAAGTAA)n |
Simple_repeat |
| scaffold23040 |
102930 |
102984 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
103324 |
103385 |
- |
RS7560 |
Unspecified |
| scaffold23040 |
103679 |
103715 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
103764 |
103865 |
- |
RS12408 |
Unspecified |
| scaffold23040 |
103946 |
103986 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
104290 |
104329 |
+ |
(TTTTTTG)n |
Simple_repeat |
| scaffold23040 |
104397 |
104460 |
+ |
(TCTTTT)n |
Simple_repeat |
| scaffold23040 |
105064 |
105191 |
+ |
RS1599 |
Unspecified |
| scaffold23040 |
105226 |
105500 |
- |
RS1780 |
Unspecified |
| scaffold23040 |
105512 |
105782 |
+ |
RS873 |
Unspecified |
| scaffold23040 |
105513 |
105876 |
+ |
RS29 |
Unspecified |
| scaffold23040 |
106568 |
106963 |
- |
RS10449 |
Unspecified |
| scaffold23040 |
107141 |
107367 |
+ |
RS7413 |
Unspecified |
| scaffold23040 |
107255 |
107457 |
+ |
RS8730 |
Unspecified |
| scaffold23040 |
107508 |
107679 |
+ |
RS1206 |
Unspecified |
| scaffold23040 |
107917 |
107956 |
+ |
(GTA)n |
Simple_repeat |
| scaffold23040 |
108036 |
108853 |
+ |
RS3702 |
Unspecified |
| scaffold23040 |
108660 |
109001 |
+ |
RS6368 |
Unspecified |
| scaffold23040 |
108886 |
109021 |
+ |
RS7465 |
Unspecified |
| scaffold23040 |
109025 |
109781 |
+ |
RS4426 |
Unspecified |
| scaffold23040 |
110025 |
110064 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
110275 |
110379 |
+ |
HAT-N9_Mad |
DNA/hAT-Ac |
| scaffold23040 |
110380 |
110435 |
- |
hAT-3_PTr |
DNA/hAT-Ac |
| scaffold23040 |
110402 |
110479 |
- |
hAT-N1c_SB |
DNA/hAT-Ac |
| scaffold23040 |
110596 |
110648 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
111258 |
111379 |
+ |
HAT-N12_Mad |
DNA/hAT-Ac |
| scaffold23040 |
111625 |
111651 |
+ |
(T)n |
Simple_repeat |
| scaffold23040 |
111672 |
111750 |
+ |
PL658 |
Unspecified |
| scaffold23040 |
111777 |
111866 |
+ |
PL315 |
Unspecified |
| scaffold23040 |
112802 |
112900 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold23040 |
113423 |
113451 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
113543 |
113648 |
+ |
RAM13_I_MT-int |
LTR |
| scaffold23040 |
114385 |
114451 |
+ |
(TGA)n |
Simple_repeat |
| scaffold23040 |
114560 |
114605 |
+ |
(ATG)n |
Simple_repeat |
| scaffold23040 |
115587 |
115624 |
+ |
Gypsy-44_Mad-I |
LTR/Gypsy |
| scaffold23040 |
115755 |
115830 |
+ |
Gypsy-44_Mad-I |
LTR/Gypsy |
| scaffold23040 |
116032 |
116078 |
+ |
A-rich |
Low_complexity |
| scaffold23040 |
116319 |
116356 |
+ |
(A)n |
Simple_repeat |
| scaffold23040 |
116930 |
117004 |
+ |
RS1122 |
Unspecified |