scaffold23060 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold23060 |
45 |
161 |
+ |
HAT-7N2_Mad |
DNA/hAT-Ac |
| scaffold23060 |
352 |
451 |
+ |
RS14797 |
Unspecified |
| scaffold23060 |
642 |
844 |
- |
RS28 |
Unspecified |
| scaffold23060 |
1204 |
1248 |
+ |
(TTTCAGC)n |
Simple_repeat |
| scaffold23060 |
1294 |
1343 |
+ |
A-rich |
Low_complexity |
| scaffold23060 |
1313 |
1494 |
- |
RS128 |
Unspecified |
| scaffold23060 |
1911 |
1950 |
+ |
(ATA)n |
Simple_repeat |
| scaffold23060 |
2064 |
2092 |
+ |
(A)n |
Simple_repeat |
| scaffold23060 |
3098 |
3209 |
- |
RS16836 |
Unspecified |
| scaffold23060 |
3124 |
3260 |
- |
RS12449 |
Unspecified |
| scaffold23060 |
3625 |
3645 |
+ |
(AT)n |
Simple_repeat |
| scaffold23060 |
4419 |
4451 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold23060 |
4617 |
4678 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold23060 |
4984 |
5026 |
+ |
A-rich |
Low_complexity |
| scaffold23060 |
5329 |
5616 |
- |
RS402 |
Unspecified |
| scaffold23060 |
5813 |
5843 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
5962 |
6098 |
- |
EnSpm-5_VV |
DNA/CMC-EnSpm |
| scaffold23060 |
7511 |
7743 |
- |
EnSpm-5_VV |
DNA/CMC-EnSpm |
| scaffold23060 |
7828 |
7857 |
+ |
(AT)n |
Simple_repeat |
| scaffold23060 |
8031 |
8072 |
+ |
(TTA)n |
Simple_repeat |
| scaffold23060 |
8588 |
8697 |
- |
PL754 |
Unspecified |
| scaffold23060 |
8603 |
8701 |
+ |
RS4475 |
Unspecified |
| scaffold23060 |
8750 |
9054 |
+ |
hAT-7_PTr |
DNA/hAT-Ac |
| scaffold23060 |
9114 |
9776 |
+ |
hAT |
hAT(TransposonPSI) |
| scaffold23060 |
9216 |
9324 |
+ |
hAT-21_ZM |
DNA/hAT-Ac |
| scaffold23060 |
9541 |
9770 |
+ |
hAT-1_GM |
DNA/hAT-Ac |
| scaffold23060 |
9814 |
10143 |
+ |
hAT |
hAT(TransposonPSI) |
| scaffold23060 |
9959 |
10139 |
+ |
ZhAT6_ZM |
DNA/hAT-Ac |
| scaffold23060 |
10246 |
10289 |
+ |
(TTATGAA)n |
Simple_repeat |
| scaffold23060 |
10329 |
10469 |
- |
RS5207 |
Unspecified |
| scaffold23060 |
11221 |
11257 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold23060 |
12600 |
12635 |
+ |
(ATG)n |
Simple_repeat |
| scaffold23060 |
15366 |
15391 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
15435 |
15470 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
17559 |
17575 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
19560 |
19620 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold23060 |
19953 |
19976 |
+ |
(A)n |
Simple_repeat |
| scaffold23060 |
20859 |
20914 |
+ |
G-rich |
Low_complexity |
| scaffold23060 |
22517 |
22540 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
22541 |
22546 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold23060 |
23457 |
23499 |
+ |
A-rich |
Low_complexity |
| scaffold23060 |
24008 |
24029 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
25572 |
25598 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold23060 |
25829 |
26109 |
+ |
RS9353 |
Unspecified |
| scaffold23060 |
26116 |
26234 |
+ |
RS7519 |
Unspecified |
| scaffold23060 |
27970 |
28253 |
+ |
RS9353 |
Unspecified |
| scaffold23060 |
28268 |
28386 |
+ |
RS7519 |
Unspecified |
| scaffold23060 |
29059 |
29087 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
30739 |
30764 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold23060 |
30904 |
30922 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
34317 |
34341 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
36302 |
36325 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
36591 |
36610 |
+ |
(A)n |
Simple_repeat |
| scaffold23060 |
37463 |
37486 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
41633 |
41697 |
+ |
A-rich |
Low_complexity |
| scaffold23060 |
44458 |
44495 |
+ |
(TCGA)n |
Simple_repeat |
| scaffold23060 |
44500 |
44580 |
+ |
(GA)n |
Simple_repeat |
| scaffold23060 |
44701 |
44761 |
- |
PL517 |
Unspecified |
| scaffold23060 |
44718 |
44776 |
- |
PL517 |
Unspecified |
| scaffold23060 |
45240 |
45291 |
+ |
(A)n |
Simple_repeat |
| scaffold23060 |
48674 |
48789 |
- |
RS2112 |
Unspecified |
| scaffold23060 |
49799 |
49862 |
+ |
A-rich |
Low_complexity |
| scaffold23060 |
50145 |
50173 |
+ |
(A)n |
Simple_repeat |
| scaffold23060 |
52642 |
52706 |
+ |
RS873 |
Unspecified |
| scaffold23060 |
52663 |
52816 |
+ |
RS29 |
Unspecified |
| scaffold23060 |
53731 |
53770 |
+ |
A-rich |
Low_complexity |
| scaffold23060 |
54977 |
55085 |
- |
RS7601 |
Unspecified |
| scaffold23060 |
54989 |
55109 |
+ |
RS5437 |
Unspecified |
| scaffold23060 |
55709 |
55908 |
- |
RS8855 |
Unspecified |
| scaffold23060 |
56242 |
56270 |
+ |
(A)n |
Simple_repeat |
| scaffold23060 |
56569 |
56594 |
+ |
(A)n |
Simple_repeat |
| scaffold23060 |
56993 |
57042 |
+ |
(TTATGT)n |
Simple_repeat |
| scaffold23060 |
57260 |
57514 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold23060 |
57708 |
57915 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold23060 |
57927 |
58118 |
+ |
RS3976 |
Unspecified |
| scaffold23060 |
59023 |
59060 |
+ |
(A)n |
Simple_repeat |
| scaffold23060 |
59276 |
59302 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
59600 |
59966 |
+ |
RS72 |
Unspecified |
| scaffold23060 |
59956 |
60649 |
- |
RS49 |
Unspecified |
| scaffold23060 |
62301 |
62818 |
+ |
RS548 |
Unspecified |
| scaffold23060 |
63279 |
63421 |
- |
RS1132 |
Unspecified |
| scaffold23060 |
63383 |
63663 |
+ |
RS5952 |
Unspecified |
| scaffold23060 |
63426 |
63662 |
+ |
RS326 |
Unspecified |
| scaffold23060 |
63736 |
63781 |
+ |
(TTG)n |
Simple_repeat |
| scaffold23060 |
64043 |
64125 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold23060 |
64339 |
64594 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold23060 |
64339 |
64448 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold23060 |
64410 |
64594 |
+ |
PL560 |
Unspecified |
| scaffold23060 |
64616 |
64771 |
- |
RS9092 |
Unspecified |
| scaffold23060 |
65875 |
65932 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold23060 |
66075 |
66202 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold23060 |
66925 |
67034 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold23060 |
66925 |
67180 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold23060 |
66996 |
67180 |
+ |
PL560 |
Unspecified |
| scaffold23060 |
67202 |
67357 |
- |
RS9092 |
Unspecified |
| scaffold23060 |
68445 |
68502 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold23060 |
68645 |
68772 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold23060 |
70977 |
71357 |
- |
LINE1I_MT |
LINE/L1 |
| scaffold23060 |
71604 |
71848 |
+ |
PL347 |
Unspecified |
| scaffold23060 |
71879 |
72187 |
+ |
RS873 |
Unspecified |
| scaffold23060 |
73334 |
73366 |
+ |
(GAAGAT)n |
Simple_repeat |
| scaffold23060 |
74992 |
75259 |
- |
RS3903 |
Unspecified |
| scaffold23060 |
75280 |
75340 |
+ |
(TTTATG)n |
Simple_repeat |
| scaffold23060 |
75748 |
76444 |
+ |
PL265 |
Unspecified |
| scaffold23060 |
76559 |
77549 |
- |
PL875 |
Unspecified |
| scaffold23060 |
79829 |
80275 |
- |
RS3739 |
Unspecified |
| scaffold23060 |
80757 |
80897 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold23060 |
81082 |
81199 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold23060 |
82259 |
82308 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold23060 |
82394 |
82432 |
+ |
(A)n |
Simple_repeat |
| scaffold23060 |
82570 |
82683 |
- |
RS16382 |
Unspecified |
| scaffold23060 |
82682 |
82936 |
- |
RS18232 |
Unspecified |
| scaffold23060 |
83546 |
83615 |
+ |
HAT-14_Mad |
DNA/hAT-Tip100 |
| scaffold23060 |
84193 |
84462 |
+ |
RS167 |
Unspecified |
| scaffold23060 |
84486 |
84506 |
+ |
(AAT)n |
Simple_repeat |
| scaffold23060 |
84605 |
85012 |
- |
PL886 |
Unspecified |
| scaffold23060 |
85193 |
85260 |
- |
RS29 |
Unspecified |
| scaffold23060 |
85259 |
85307 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold23060 |
85381 |
85472 |
- |
SIMPLEHAT2 |
DNA/hAT |
| scaffold23060 |
85836 |
85906 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold23060 |
85908 |
86151 |
+ |
RS873 |
Unspecified |
| scaffold23060 |
87334 |
87366 |
+ |
(GAAGAT)n |
Simple_repeat |
| scaffold23060 |
88380 |
88410 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold23060 |
88599 |
89300 |
+ |
PL265 |
Unspecified |
| scaffold23060 |
90398 |
90424 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold23060 |
90623 |
90673 |
+ |
(AAAACTTCAG)n |
Simple_repeat |
| scaffold23060 |
90803 |
90833 |
+ |
(AAT)n |
Simple_repeat |
| scaffold23060 |
91010 |
91050 |
+ |
(TTA)n |
Simple_repeat |
| scaffold23060 |
91151 |
91237 |
+ |
(ATCTGAAGTT)n |
Simple_repeat |
| scaffold23060 |
92104 |
92161 |
+ |
GA-rich |
Low_complexity |
| scaffold23060 |
92225 |
92482 |
- |
PL9 |
Unspecified |
| scaffold23060 |
92372 |
92632 |
- |
RS774 |
Unspecified |
| scaffold23060 |
93330 |
93376 |
+ |
(TAATAT)n |
Simple_repeat |
| scaffold23060 |
93452 |
93478 |
+ |
A-rich |
Low_complexity |
| scaffold23060 |
93608 |
93769 |
+ |
PL9 |
Unspecified |
| scaffold23060 |
94037 |
94061 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold23060 |
94201 |
94232 |
+ |
(TATACA)n |
Simple_repeat |
| scaffold23060 |
94281 |
94724 |
+ |
RS3739 |
Unspecified |
| scaffold23060 |
95134 |
95178 |
+ |
(GAC)n |
Simple_repeat |
| scaffold23060 |
95193 |
95438 |
+ |
RS3976 |
Unspecified |
| scaffold23060 |
96081 |
96137 |
+ |
(TTTGTTC)n |
Simple_repeat |
| scaffold23060 |
96492 |
96518 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
96652 |
97071 |
+ |
RS3739 |
Unspecified |
| scaffold23060 |
97491 |
97737 |
+ |
RS3976 |
Unspecified |
| scaffold23060 |
99773 |
99801 |
+ |
(GCC)n |
Simple_repeat |
| scaffold23060 |
100360 |
100393 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
102241 |
102270 |
+ |
(TGCCG)n |
Simple_repeat |
| scaffold23060 |
102984 |
103024 |
+ |
(CACGAC)n |
Simple_repeat |
| scaffold23060 |
106617 |
106676 |
+ |
A-rich |
Low_complexity |
| scaffold23060 |
106677 |
106709 |
+ |
(CAA)n |
Simple_repeat |
| scaffold23060 |
106710 |
106762 |
+ |
A-rich |
Low_complexity |
| scaffold23060 |
107021 |
107055 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
108323 |
108417 |
+ |
RS167 |
Unspecified |
| scaffold23060 |
109872 |
109923 |
+ |
(TTCATC)n |
Simple_repeat |
| scaffold23060 |
111342 |
111425 |
+ |
(TAA)n |
Simple_repeat |
| scaffold23060 |
113193 |
113238 |
+ |
(AATC)n |
Simple_repeat |
| scaffold23060 |
113234 |
113284 |
+ |
A-rich |
Low_complexity |
| scaffold23060 |
113746 |
113807 |
+ |
PL815 |
Unspecified |
| scaffold23060 |
117048 |
117070 |
+ |
(A)n |
Simple_repeat |
| scaffold23060 |
120958 |
120988 |
+ |
(CTC)n |
Simple_repeat |
| scaffold23060 |
121313 |
121339 |
+ |
(CAAAC)n |
Simple_repeat |
| scaffold23060 |
121870 |
122051 |
+ |
RS79 |
Unspecified |
| scaffold23060 |
122429 |
122607 |
- |
RS3976 |
Unspecified |
| scaffold23060 |
123012 |
123457 |
- |
RS3739 |
Unspecified |
| scaffold23060 |
124071 |
124250 |
+ |
RS2452 |
Unspecified |
| scaffold23060 |
124986 |
125004 |
+ |
(A)n |
Simple_repeat |
| scaffold23060 |
126292 |
126331 |
+ |
(ATACA)n |
Simple_repeat |
| scaffold23060 |
126949 |
127211 |
+ |
RS16888 |
Unspecified |
| scaffold23060 |
128779 |
129024 |
- |
RS16888 |
Unspecified |
| scaffold23060 |
129265 |
129296 |
+ |
(T)n |
Simple_repeat |
| scaffold23060 |
129308 |
129567 |
- |
RS4885 |
Unspecified |
| scaffold23060 |
129627 |
129676 |
+ |
(TTCTTA)n |
Simple_repeat |
| scaffold23060 |
129955 |
129986 |
+ |
(A)n |
Simple_repeat |
| scaffold23060 |
129994 |
130099 |
+ |
PL803 |
Unspecified |
| scaffold23060 |
130194 |
130419 |
- |
RS490 |
Unspecified |
| scaffold23060 |
131322 |
131356 |
+ |
(CGACC)n |
Simple_repeat |
| scaffold23060 |
131801 |
131899 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold23060 |
131985 |
132263 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold23060 |
132113 |
132223 |
+ |
Copia-2_ST-I |
LTR/Copia |
| scaffold23060 |
132426 |
132574 |
+ |
Copia-2_ST-I |
LTR/Copia |
| scaffold23060 |
133134 |
133255 |
- |
RS246 |
Unspecified |
| scaffold23060 |
133634 |
134234 |
- |
RS530 |
Unspecified |
| scaffold23060 |
134310 |
134528 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold23060 |
134350 |
134524 |
+ |
Copia-2_ST-I |
LTR/Copia |
| scaffold23060 |
135119 |
135155 |
+ |
(AACGGAA)n |
Simple_repeat |
| scaffold23060 |
135630 |
135684 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold23060 |
136860 |
136943 |
+ |
(TTATAAT)n |
Simple_repeat |
| scaffold23060 |
137514 |
138380 |
+ |
Copia-21_Pru-I |
LTR/Copia |
| scaffold23060 |
138766 |
140375 |
+ |
Copia-21_Pru-I |
LTR/Copia |
| scaffold23060 |
140893 |
141074 |
- |
RS79 |
Unspecified |
| scaffold23060 |
142133 |
142182 |
- |
RS454 |
Unspecified |
| scaffold23060 |
142139 |
142434 |
- |
RS13658 |
Unspecified |
| scaffold23060 |
143095 |
143552 |
+ |
RS490 |
Unspecified |
| scaffold23060 |
144166 |
144300 |
- |
RS1626 |
Unspecified |
| scaffold23060 |
144531 |
145021 |
+ |
RS933 |
Unspecified |
| scaffold23060 |
145876 |
145930 |
+ |
RS14573 |
Unspecified |
| scaffold23060 |
147776 |
147806 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold23060 |
148174 |
148269 |
+ |
RS172 |
Unspecified |
| scaffold23060 |
148344 |
148396 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold23060 |
148406 |
148540 |
- |
PL422 |
Unspecified |
| scaffold23060 |
148830 |
148869 |
+ |
A-rich |
Low_complexity |
| scaffold23060 |
152640 |
153164 |
- |
PL490 |
Unspecified |
| scaffold23060 |
154673 |
154744 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold23060 |
154745 |
154957 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold23060 |
155854 |
156127 |
- |
RS356 |
Unspecified |
| scaffold23060 |
156539 |
156568 |
+ |
(ACCCGA)n |
Simple_repeat |
| scaffold23060 |
157269 |
157408 |
+ |
PL712 |
Unspecified |
| scaffold23060 |
157411 |
157648 |
+ |
PL563 |
Unspecified |
| scaffold23060 |
158791 |
158845 |
+ |
(ATTTAT)n |
Simple_repeat |
| scaffold23060 |
158983 |
159018 |
+ |
A-rich |
Low_complexity |
| scaffold23060 |
162877 |
162906 |
+ |
Copia-3_PTri-I |
LTR/Copia |