scaffold23878 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold23878 |
1 |
360 |
+ |
RS934 |
Unspecified |
| scaffold23878 |
692 |
733 |
+ |
(AACATGA)n |
Simple_repeat |
| scaffold23878 |
831 |
1773 |
- |
RS122 |
Unspecified |
| scaffold23878 |
1673 |
2860 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold23878 |
3908 |
3993 |
- |
RS1401 |
Unspecified |
| scaffold23878 |
5595 |
5633 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
5819 |
5840 |
+ |
(ATGA)n |
Simple_repeat |
| scaffold23878 |
6307 |
6479 |
+ |
(ATATAGT)n |
Simple_repeat |
| scaffold23878 |
6401 |
6479 |
+ |
(ATATAGT)n |
Simple_repeat |
| scaffold23878 |
7417 |
7465 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
8242 |
8406 |
+ |
RS10426 |
Unspecified |
| scaffold23878 |
9641 |
9677 |
+ |
HAT-8_Mad |
DNA/hAT-Ac |
| scaffold23878 |
9647 |
10171 |
- |
EnSpm1_SB |
DNA/CMC-EnSpm |
| scaffold23878 |
10484 |
10508 |
+ |
(AAT)n |
Simple_repeat |
| scaffold23878 |
11851 |
12059 |
- |
RS7740 |
Unspecified |
| scaffold23878 |
12148 |
12297 |
- |
RS13353 |
Unspecified |
| scaffold23878 |
12273 |
13769 |
- |
RS118 |
Unspecified |
| scaffold23878 |
18548 |
18641 |
+ |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold23878 |
19261 |
21032 |
+ |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold23878 |
19668 |
21032 |
+ |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold23878 |
21059 |
21639 |
- |
RS344 |
Unspecified |
| scaffold23878 |
21144 |
22409 |
+ |
RS1451 |
Unspecified |
| scaffold23878 |
22404 |
22548 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
22471 |
22600 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
22505 |
22647 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
22564 |
22699 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
22604 |
22746 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
22663 |
22798 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
22703 |
22845 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
22762 |
22897 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
22802 |
22944 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
22861 |
22996 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
22901 |
23043 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
22960 |
23103 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
23000 |
23165 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
23061 |
23225 |
+ |
RS108 |
Unspecified |
| scaffold23878 |
24372 |
24414 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
24709 |
25742 |
- |
PL670 |
Unspecified |
| scaffold23878 |
26000 |
26022 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
26579 |
26619 |
+ |
(TAA)n |
Simple_repeat |
| scaffold23878 |
27399 |
27426 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold23878 |
29650 |
29727 |
+ |
(AAT)n |
Simple_repeat |
| scaffold23878 |
29959 |
29995 |
+ |
(TA)n |
Simple_repeat |
| scaffold23878 |
30157 |
30213 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
32509 |
32538 |
+ |
(GATG)n |
Simple_repeat |
| scaffold23878 |
33120 |
33213 |
- |
RS16382 |
Unspecified |
| scaffold23878 |
35174 |
35455 |
+ |
PL422 |
Unspecified |
| scaffold23878 |
35839 |
36130 |
+ |
RS384 |
Unspecified |
| scaffold23878 |
36166 |
36201 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
36291 |
36328 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
39434 |
39453 |
+ |
(CAC)n |
Simple_repeat |
| scaffold23878 |
39537 |
39575 |
+ |
(CCT)n |
Simple_repeat |
| scaffold23878 |
39580 |
39678 |
+ |
Copia6-I_VC |
LTR/Copia |
| scaffold23878 |
39840 |
39875 |
+ |
(ACTAA)n |
Simple_repeat |
| scaffold23878 |
39985 |
40022 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
40102 |
40158 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold23878 |
40218 |
40260 |
+ |
(ATG)n |
Simple_repeat |
| scaffold23878 |
40265 |
40297 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
40357 |
40410 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold23878 |
40542 |
40595 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold23878 |
40967 |
40995 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
41137 |
41170 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold23878 |
41236 |
41254 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
45147 |
45346 |
+ |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold23878 |
45589 |
45651 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
45650 |
45701 |
+ |
(AACTACC)n |
Simple_repeat |
| scaffold23878 |
46361 |
46391 |
+ |
(AATT)n |
Simple_repeat |
| scaffold23878 |
46740 |
46779 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
47548 |
47609 |
+ |
(CTT)n |
Simple_repeat |
| scaffold23878 |
47949 |
47956 |
+ |
(TTGT)n |
Simple_repeat |
| scaffold23878 |
47957 |
47982 |
+ |
(TG)n |
Simple_repeat |
| scaffold23878 |
47983 |
48017 |
+ |
(TTGT)n |
Simple_repeat |
| scaffold23878 |
54855 |
54879 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
57343 |
57394 |
+ |
Copia-7_BRa-I |
LTR/Copia |
| scaffold23878 |
57513 |
57669 |
- |
RS13162 |
Unspecified |
| scaffold23878 |
57768 |
58057 |
- |
RS5405 |
Unspecified |
| scaffold23878 |
58369 |
58429 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
58369 |
58717 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
58405 |
58717 |
- |
RS13154 |
Unspecified |
| scaffold23878 |
58842 |
59096 |
- |
RS6047 |
Unspecified |
| scaffold23878 |
60652 |
60682 |
+ |
Copia-7_BRa-I |
LTR/Copia |
| scaffold23878 |
60810 |
60982 |
- |
RS13162 |
Unspecified |
| scaffold23878 |
61237 |
61299 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
61435 |
61473 |
+ |
(AATATCG)n |
Simple_repeat |
| scaffold23878 |
61731 |
61748 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
61756 |
61809 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
61848 |
62036 |
- |
RS13154 |
Unspecified |
| scaffold23878 |
62169 |
62205 |
- |
RS13154 |
Unspecified |
| scaffold23878 |
62350 |
62460 |
+ |
RS5698 |
Unspecified |
| scaffold23878 |
62595 |
62634 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold23878 |
62681 |
62887 |
+ |
RS4979 |
Unspecified |
| scaffold23878 |
63009 |
63279 |
- |
RS6047 |
Unspecified |
| scaffold23878 |
63557 |
63608 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
64954 |
65151 |
+ |
RS13389 |
Unspecified |
| scaffold23878 |
65165 |
65212 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
65418 |
65441 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
65934 |
65983 |
+ |
(AATAATT)n |
Simple_repeat |
| scaffold23878 |
66490 |
66609 |
- |
RS3427 |
Unspecified |
| scaffold23878 |
66581 |
66713 |
- |
RS18386 |
Unspecified |
| scaffold23878 |
67061 |
67255 |
+ |
RS11612 |
Unspecified |
| scaffold23878 |
67253 |
67289 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
67927 |
67953 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
68167 |
68191 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
68687 |
68713 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
68928 |
68950 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
70056 |
70246 |
+ |
RS13389 |
Unspecified |
| scaffold23878 |
70262 |
70310 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
71126 |
71177 |
+ |
Copia-7_BRa-I |
LTR/Copia |
| scaffold23878 |
71282 |
71464 |
- |
RS13162 |
Unspecified |
| scaffold23878 |
71571 |
71861 |
- |
RS5405 |
Unspecified |
| scaffold23878 |
72094 |
72391 |
- |
RS446 |
Unspecified |
| scaffold23878 |
72369 |
72456 |
- |
RS3427 |
Unspecified |
| scaffold23878 |
72389 |
72488 |
+ |
RS4 |
Unspecified |
| scaffold23878 |
72535 |
72825 |
- |
RS6047 |
Unspecified |
| scaffold23878 |
72853 |
73269 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
72853 |
72876 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
72866 |
73269 |
+ |
PL317 |
Unspecified |
| scaffold23878 |
73392 |
73418 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
73815 |
73845 |
+ |
Copia-7_BRa-I |
LTR/Copia |
| scaffold23878 |
73974 |
74150 |
- |
RS13162 |
Unspecified |
| scaffold23878 |
74183 |
74457 |
- |
RS5405 |
Unspecified |
| scaffold23878 |
74702 |
74721 |
+ |
(TA)n |
Simple_repeat |
| scaffold23878 |
74837 |
74860 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
74978 |
74999 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
74978 |
75181 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
74991 |
75181 |
- |
RS13154 |
Unspecified |
| scaffold23878 |
75180 |
75498 |
- |
RS13154 |
Unspecified |
| scaffold23878 |
75607 |
75885 |
- |
RS6047 |
Unspecified |
| scaffold23878 |
76324 |
76901 |
+ |
PL610 |
Unspecified |
| scaffold23878 |
77705 |
77727 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold23878 |
78012 |
78209 |
+ |
RS13389 |
Unspecified |
| scaffold23878 |
78230 |
78270 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
78803 |
79003 |
+ |
RS13389 |
Unspecified |
| scaffold23878 |
79019 |
79052 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
79226 |
79252 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
82578 |
82620 |
+ |
(TCAA)n |
Simple_repeat |
| scaffold23878 |
82892 |
82913 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
83244 |
83289 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
83710 |
83969 |
- |
RS237 |
Unspecified |
| scaffold23878 |
86201 |
86276 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold23878 |
86748 |
86783 |
+ |
(TCTCCT)n |
Simple_repeat |
| scaffold23878 |
88053 |
88083 |
+ |
(TCAATT)n |
Simple_repeat |
| scaffold23878 |
88736 |
89278 |
+ |
RS334 |
Unspecified |
| scaffold23878 |
89339 |
89375 |
+ |
RS334 |
Unspecified |
| scaffold23878 |
89569 |
89609 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold23878 |
89859 |
89892 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
89904 |
89960 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
90227 |
90365 |
+ |
RS8 |
Unspecified |
| scaffold23878 |
90357 |
90534 |
+ |
RS38 |
Unspecified |
| scaffold23878 |
90536 |
90786 |
- |
RS311 |
Unspecified |
| scaffold23878 |
90867 |
90930 |
+ |
(ATAGTTA)n |
Simple_repeat |
| scaffold23878 |
90913 |
90971 |
+ |
(TAA)n |
Simple_repeat |
| scaffold23878 |
91518 |
91559 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
92398 |
92416 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
92775 |
92836 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
92858 |
92881 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
92910 |
92967 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold23878 |
94949 |
95043 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold23878 |
95651 |
95682 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
96191 |
96471 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold23878 |
96724 |
96765 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
97100 |
97151 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
97957 |
97994 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
98444 |
98813 |
- |
RS8 |
Unspecified |
| scaffold23878 |
98927 |
99257 |
- |
RS138 |
Unspecified |
| scaffold23878 |
99160 |
99328 |
+ |
RS5822 |
Unspecified |
| scaffold23878 |
99403 |
99467 |
+ |
(ATG)n |
Simple_repeat |
| scaffold23878 |
99403 |
99562 |
+ |
(ATG)n |
Simple_repeat |
| scaffold23878 |
99451 |
99562 |
- |
RS3666 |
Unspecified |
| scaffold23878 |
99537 |
99614 |
+ |
PL597 |
Unspecified |
| scaffold23878 |
99567 |
99687 |
- |
PL179 |
Unspecified |
| scaffold23878 |
99624 |
99770 |
+ |
RS2100 |
Unspecified |
| scaffold23878 |
99672 |
99869 |
+ |
RS2015 |
Unspecified |
| scaffold23878 |
99816 |
99912 |
+ |
RS2015 |
Unspecified |
| scaffold23878 |
99912 |
100094 |
+ |
RS2015 |
Unspecified |
| scaffold23878 |
100267 |
100329 |
- |
COPIO_I-int |
LTR/Copia |
| scaffold23878 |
100955 |
101285 |
- |
RS820 |
Unspecified |
| scaffold23878 |
102196 |
102248 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold23878 |
102249 |
102385 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold23878 |
102634 |
102727 |
- |
RS16382 |
Unspecified |
| scaffold23878 |
103182 |
103445 |
+ |
RS356 |
Unspecified |
| scaffold23878 |
103581 |
103807 |
- |
RS2496 |
Unspecified |
| scaffold23878 |
104671 |
104842 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold23878 |
104843 |
104917 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold23878 |
105526 |
105867 |
+ |
RS8 |
Unspecified |
| scaffold23878 |
106045 |
106098 |
+ |
(TAA)n |
Simple_repeat |
| scaffold23878 |
106391 |
106407 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
106508 |
106599 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold23878 |
106862 |
106903 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold23878 |
107811 |
107938 |
+ |
PL753 |
Unspecified |
| scaffold23878 |
108295 |
108389 |
- |
RS16382 |
Unspecified |
| scaffold23878 |
108772 |
109419 |
- |
RS4930 |
Unspecified |
| scaffold23878 |
109456 |
109527 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
110033 |
110288 |
- |
RS1 |
Unspecified |
| scaffold23878 |
110673 |
110697 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold23878 |
110841 |
111013 |
+ |
RS133 |
Unspecified |
| scaffold23878 |
111018 |
111079 |
+ |
RS133 |
Unspecified |
| scaffold23878 |
112493 |
112663 |
- |
RS4 |
Unspecified |
| scaffold23878 |
113269 |
113349 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
114100 |
114147 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold23878 |
115538 |
115956 |
- |
PL607 |
Unspecified |
| scaffold23878 |
116047 |
116088 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold23878 |
116409 |
116493 |
+ |
PL621 |
Unspecified |
| scaffold23878 |
117114 |
117228 |
+ |
RS212 |
Unspecified |
| scaffold23878 |
117211 |
117322 |
- |
RS361 |
Unspecified |
| scaffold23878 |
118319 |
118415 |
- |
RS12449 |
Unspecified |
| scaffold23878 |
118745 |
118945 |
- |
RS614 |
Unspecified |
| scaffold23878 |
119002 |
119342 |
- |
RS1250 |
Unspecified |
| scaffold23878 |
119363 |
119955 |
+ |
RS1250 |
Unspecified |
| scaffold23878 |
119991 |
120007 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
120128 |
120195 |
+ |
(CCCGAA)n |
Simple_repeat |
| scaffold23878 |
120335 |
120605 |
+ |
RS1 |
Unspecified |
| scaffold23878 |
120655 |
120678 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
121500 |
121516 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold23878 |
121517 |
121556 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
121747 |
121815 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
122689 |
123206 |
+ |
PL587 |
Unspecified |
| scaffold23878 |
125586 |
125604 |
+ |
(TG)n |
Simple_repeat |
| scaffold23878 |
126549 |
126579 |
+ |
(ATAAA)n |
Simple_repeat |
| scaffold23878 |
126812 |
126853 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
127507 |
127555 |
- |
LINE1-46_SBi |
LINE/L1 |
| scaffold23878 |
128296 |
128343 |
+ |
(AATAAC)n |
Simple_repeat |
| scaffold23878 |
129612 |
129668 |
+ |
RS18 |
Unspecified |
| scaffold23878 |
129668 |
129943 |
- |
RS574 |
Unspecified |
| scaffold23878 |
129939 |
130105 |
+ |
RS18 |
Unspecified |
| scaffold23878 |
130625 |
130710 |
- |
RS17105 |
Unspecified |
| scaffold23878 |
130637 |
130790 |
- |
PL517 |
Unspecified |
| scaffold23878 |
131207 |
131573 |
- |
PL436 |
Unspecified |
| scaffold23878 |
132757 |
132808 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold23878 |
133131 |
133160 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold23878 |
133161 |
133280 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold23878 |
133281 |
133331 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold23878 |
133978 |
134032 |
+ |
(GAACT)n |
Simple_repeat |
| scaffold23878 |
134056 |
134161 |
+ |
(ACTGA)n |
Simple_repeat |
| scaffold23878 |
135838 |
135868 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
140019 |
140057 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
140438 |
140664 |
- |
RS18 |
Unspecified |
| scaffold23878 |
140761 |
140784 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
140807 |
140997 |
- |
PL700 |
Unspecified |
| scaffold23878 |
141372 |
141423 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold23878 |
142566 |
142628 |
- |
RS133 |
Unspecified |
| scaffold23878 |
142788 |
142816 |
+ |
(ACCCG)n |
Simple_repeat |
| scaffold23878 |
143564 |
143621 |
+ |
(TGAAGAA)n |
Simple_repeat |
| scaffold23878 |
143704 |
143738 |
+ |
(TTG)n |
Simple_repeat |
| scaffold23878 |
144045 |
144196 |
- |
RS98 |
Unspecified |
| scaffold23878 |
144204 |
144311 |
+ |
PL513 |
Unspecified |
| scaffold23878 |
144431 |
144480 |
+ |
(TAATTA)n |
Simple_repeat |
| scaffold23878 |
144575 |
144666 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold23878 |
144977 |
145067 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold23878 |
145137 |
145551 |
+ |
PL513 |
Unspecified |
| scaffold23878 |
145801 |
146168 |
- |
RS6485 |
Unspecified |
| scaffold23878 |
146167 |
146426 |
+ |
RS26 |
Unspecified |
| scaffold23878 |
148279 |
148300 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
152153 |
152197 |
+ |
(TTTAAT)n |
Simple_repeat |
| scaffold23878 |
152816 |
152898 |
+ |
(ATG)n |
Simple_repeat |
| scaffold23878 |
153356 |
153494 |
+ |
RS13085 |
Unspecified |
| scaffold23878 |
154808 |
154827 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
155341 |
155605 |
- |
PL637 |
Unspecified |
| scaffold23878 |
155640 |
155725 |
+ |
(TTCAGAAAAC)n |
Simple_repeat |
| scaffold23878 |
156001 |
156526 |
+ |
(TAA)n |
Simple_repeat |
| scaffold23878 |
156386 |
156526 |
+ |
(TAA)n |
Simple_repeat |
| scaffold23878 |
156546 |
156639 |
+ |
(ACTTCAGAAA)n |
Simple_repeat |
| scaffold23878 |
156684 |
156731 |
- |
PL637 |
Unspecified |
| scaffold23878 |
158706 |
158743 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold23878 |
159547 |
159823 |
+ |
RS1 |
Unspecified |
| scaffold23878 |
161522 |
161543 |
+ |
(AATC)n |
Simple_repeat |
| scaffold23878 |
161866 |
161897 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
163490 |
163543 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold23878 |
164404 |
164467 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold23878 |
164519 |
164540 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
164637 |
165299 |
- |
RS623 |
Unspecified |
| scaffold23878 |
165301 |
165705 |
- |
RS626 |
Unspecified |
| scaffold23878 |
165888 |
165963 |
+ |
(ATT)n |
Simple_repeat |
| scaffold23878 |
166077 |
166135 |
+ |
(ATT)n |
Simple_repeat |
| scaffold23878 |
166549 |
166577 |
+ |
(CATG)n |
Simple_repeat |
| scaffold23878 |
166915 |
167020 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold23878 |
167097 |
167146 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold23878 |
167147 |
167302 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold23878 |
167147 |
167337 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold23878 |
167290 |
167337 |
+ |
RS16604 |
Unspecified |
| scaffold23878 |
169631 |
169673 |
+ |
(TTTGATT)n |
Simple_repeat |
| scaffold23878 |
170086 |
170123 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
172542 |
172583 |
+ |
(TTTAGT)n |
Simple_repeat |
| scaffold23878 |
178800 |
178832 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
180653 |
180663 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
180664 |
180748 |
+ |
(ATTAAGA)n |
Simple_repeat |
| scaffold23878 |
181245 |
181292 |
+ |
(TCTTCCT)n |
Simple_repeat |
| scaffold23878 |
181285 |
181362 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
181425 |
181441 |
+ |
(TC)n |
Simple_repeat |
| scaffold23878 |
181479 |
181505 |
+ |
(GATT)n |
Simple_repeat |
| scaffold23878 |
181507 |
181531 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
181727 |
181753 |
+ |
(TTGAAT)n |
Simple_repeat |
| scaffold23878 |
189451 |
189472 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold23878 |
189561 |
189593 |
+ |
(AAATT)n |
Simple_repeat |
| scaffold23878 |
189909 |
190036 |
+ |
RS620 |
Unspecified |
| scaffold23878 |
190050 |
190208 |
- |
RS459 |
Unspecified |
| scaffold23878 |
193460 |
193592 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold23878 |
193639 |
193716 |
+ |
(TAT)n |
Simple_repeat |
| scaffold23878 |
193942 |
193981 |
+ |
(TTTTCCT)n |
Simple_repeat |
| scaffold23878 |
193989 |
194014 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
194116 |
194181 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold23878 |
194182 |
194228 |
+ |
(TTG)n |
Simple_repeat |
| scaffold23878 |
194229 |
194266 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold23878 |
194296 |
194357 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
195471 |
195522 |
+ |
(TAA)n |
Simple_repeat |
| scaffold23878 |
196103 |
196138 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
201298 |
201379 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
201569 |
201599 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
201785 |
201830 |
+ |
(TTTATAC)n |
Simple_repeat |
| scaffold23878 |
202180 |
202222 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
202507 |
202530 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
202929 |
203196 |
+ |
RS68 |
Unspecified |
| scaffold23878 |
203687 |
203861 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold23878 |
203898 |
204003 |
- |
PL754 |
Unspecified |
| scaffold23878 |
203997 |
204106 |
+ |
RS4475 |
Unspecified |
| scaffold23878 |
205083 |
205104 |
- |
LT1_EPa |
LTR? |
| scaffold23878 |
205105 |
205189 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold23878 |
205460 |
205544 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold23878 |
207718 |
207768 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
208470 |
208504 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
209138 |
209164 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
209474 |
209520 |
+ |
RS17 |
Unspecified |
| scaffold23878 |
209549 |
209646 |
+ |
ATRAN |
DNA? |
| scaffold23878 |
210255 |
210707 |
+ |
RS1814 |
Unspecified |
| scaffold23878 |
211181 |
211256 |
+ |
HADES_TA |
DNA/TcMar-Stowaway |
| scaffold23878 |
212051 |
212088 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
212852 |
212879 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
213515 |
213556 |
+ |
(TATT)n |
Simple_repeat |
| scaffold23878 |
213712 |
213806 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold23878 |
213809 |
213837 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold23878 |
213838 |
214246 |
+ |
(ATT)n |
Simple_repeat |
| scaffold23878 |
214247 |
214314 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold23878 |
214723 |
214744 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
215943 |
216026 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold23878 |
216356 |
216439 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold23878 |
216832 |
216850 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
217918 |
218423 |
+ |
PL292 |
Unspecified |
| scaffold23878 |
218636 |
218691 |
+ |
(CCCTC)n |
Simple_repeat |
| scaffold23878 |
218710 |
218743 |
+ |
G-rich |
Low_complexity |
| scaffold23878 |
221402 |
221425 |
+ |
(TA)n |
Simple_repeat |
| scaffold23878 |
221984 |
222009 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
224178 |
224443 |
- |
RS10 |
Unspecified |
| scaffold23878 |
225763 |
226185 |
- |
PL580 |
Unspecified |
| scaffold23878 |
226321 |
226374 |
+ |
(AATATA)n |
Simple_repeat |
| scaffold23878 |
226638 |
227038 |
- |
RS792 |
Unspecified |
| scaffold23878 |
227343 |
227385 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
227570 |
227586 |
+ |
(TTA)n |
Simple_repeat |
| scaffold23878 |
230555 |
230656 |
+ |
RS9148 |
Unspecified |
| scaffold23878 |
231818 |
231891 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold23878 |
231892 |
231943 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold23878 |
232403 |
232441 |
+ |
(TGTTGAT)n |
Simple_repeat |
| scaffold23878 |
232862 |
232909 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
233150 |
233251 |
+ |
RS9148 |
Unspecified |
| scaffold23878 |
234104 |
234160 |
+ |
(TAA)n |
Simple_repeat |
| scaffold23878 |
235077 |
235110 |
+ |
(AAT)n |
Simple_repeat |
| scaffold23878 |
236284 |
236385 |
+ |
RS9148 |
Unspecified |
| scaffold23878 |
238420 |
238523 |
- |
RS492 |
Unspecified |
| scaffold23878 |
238733 |
239218 |
+ |
PL6 |
Unspecified |
| scaffold23878 |
239869 |
239970 |
+ |
RS9148 |
Unspecified |
| scaffold23878 |
241759 |
242156 |
+ |
PL565 |
Unspecified |
| scaffold23878 |
243669 |
243696 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
244151 |
244182 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
244535 |
244637 |
+ |
RS9148 |
Unspecified |
| scaffold23878 |
246552 |
246592 |
+ |
(AACTTCAA)n |
Simple_repeat |
| scaffold23878 |
246890 |
246991 |
+ |
RS9148 |
Unspecified |
| scaffold23878 |
248020 |
248039 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
250806 |
250842 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
251657 |
251709 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
251783 |
251820 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
251884 |
251981 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
252434 |
252463 |
+ |
(ACCCGA)n |
Simple_repeat |
| scaffold23878 |
252747 |
253426 |
+ |
PL563 |
Unspecified |
| scaffold23878 |
253495 |
253538 |
+ |
(TTTAATT)n |
Simple_repeat |
| scaffold23878 |
256027 |
256084 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
256527 |
256543 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
257283 |
257545 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold23878 |
257936 |
257970 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold23878 |
258196 |
258241 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold23878 |
258854 |
258899 |
+ |
Gypsy-46_STu-I |
LTR/Gypsy |
| scaffold23878 |
259570 |
259699 |
+ |
Gypsy-46_STu-I |
LTR/Gypsy |
| scaffold23878 |
260526 |
260725 |
+ |
RS6781 |
Unspecified |
| scaffold23878 |
260718 |
260815 |
+ |
Gypsy-46_STu-I |
LTR/Gypsy |
| scaffold23878 |
263019 |
263064 |
+ |
(CTTTCGA)n |
Simple_repeat |
| scaffold23878 |
263319 |
263365 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
263609 |
263678 |
+ |
WHAM2_TM-int |
LTR/Gypsy |
| scaffold23878 |
264013 |
264047 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold23878 |
264274 |
264319 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold23878 |
264930 |
264984 |
+ |
RS640 |
Unspecified |
| scaffold23878 |
265600 |
266150 |
- |
RS72 |
Unspecified |
| scaffold23878 |
266274 |
266370 |
+ |
RS16382 |
Unspecified |
| scaffold23878 |
266740 |
266762 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
266816 |
266851 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
266842 |
266915 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold23878 |
266964 |
267001 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
267158 |
267195 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
267999 |
268031 |
+ |
(TGA)n |
Simple_repeat |
| scaffold23878 |
270274 |
270323 |
- |
RS17105 |
Unspecified |
| scaffold23878 |
270910 |
270964 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold23878 |
270994 |
271040 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold23878 |
271772 |
271951 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold23878 |
274218 |
274446 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold23878 |
278495 |
278545 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
278714 |
278789 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
279928 |
280068 |
- |
RS13405 |
Unspecified |
| scaffold23878 |
280779 |
280820 |
+ |
(TATCTA)n |
Simple_repeat |
| scaffold23878 |
281047 |
281097 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold23878 |
281191 |
281335 |
+ |
(TATA)n |
Simple_repeat |
| scaffold23878 |
281191 |
281228 |
+ |
(TATA)n |
Simple_repeat |
| scaffold23878 |
281218 |
281335 |
+ |
RS520 |
Unspecified |
| scaffold23878 |
281691 |
281785 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
281996 |
282025 |
+ |
(ATT)n |
Simple_repeat |
| scaffold23878 |
282761 |
282950 |
+ |
(ATAAAAA)n |
Simple_repeat |
| scaffold23878 |
282911 |
282950 |
+ |
(ATAAAAA)n |
Simple_repeat |
| scaffold23878 |
283204 |
283464 |
+ |
RS356 |
Unspecified |
| scaffold23878 |
283462 |
283579 |
- |
RS474 |
Unspecified |
| scaffold23878 |
283970 |
284021 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
284386 |
284479 |
- |
RS16382 |
Unspecified |
| scaffold23878 |
285593 |
285713 |
- |
RS15179 |
Unspecified |
| scaffold23878 |
285614 |
285796 |
- |
RS79 |
Unspecified |
| scaffold23878 |
286923 |
287082 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold23878 |
287317 |
287717 |
- |
PL582 |
Unspecified |
| scaffold23878 |
289133 |
289242 |
- |
RS16358 |
Unspecified |
| scaffold23878 |
289148 |
289405 |
+ |
RS1 |
Unspecified |
| scaffold23878 |
289547 |
289596 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold23878 |
291839 |
291869 |
+ |
(GTGCCT)n |
Simple_repeat |
| scaffold23878 |
292082 |
292125 |
+ |
(ACCCGAA)n |
Simple_repeat |
| scaffold23878 |
292159 |
292237 |
+ |
RS14512 |
Unspecified |
| scaffold23878 |
293017 |
293113 |
- |
RS4475 |
Unspecified |
| scaffold23878 |
293849 |
293876 |
+ |
(CATA)n |
Simple_repeat |
| scaffold23878 |
294076 |
294208 |
- |
RS3665 |
Unspecified |
| scaffold23878 |
294726 |
294817 |
+ |
(ATT)n |
Simple_repeat |
| scaffold23878 |
296784 |
296800 |
+ |
(A)n |
Simple_repeat |
| scaffold23878 |
297477 |
297537 |
+ |
(ATAATT)n |
Simple_repeat |
| scaffold23878 |
297696 |
297746 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold23878 |
299177 |
299206 |
+ |
(TTGT)n |
Simple_repeat |
| scaffold23878 |
299502 |
299551 |
+ |
(ATATAA)n |
Simple_repeat |
| scaffold23878 |
299592 |
299787 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold23878 |
299871 |
299905 |
+ |
(CATAT)n |
Simple_repeat |
| scaffold23878 |
300867 |
300895 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
301519 |
301616 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
301707 |
301875 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold23878 |
302017 |
302206 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold23878 |
302539 |
302594 |
+ |
(TGATTTA)n |
Simple_repeat |
| scaffold23878 |
303279 |
304918 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold23878 |
305293 |
306533 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold23878 |
306808 |
307554 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold23878 |
309139 |
309189 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
309916 |
309936 |
+ |
(T)n |
Simple_repeat |
| scaffold23878 |
310796 |
310825 |
+ |
G-rich |
Low_complexity |
| scaffold23878 |
311128 |
311404 |
+ |
RS187 |
Unspecified |
| scaffold23878 |
312590 |
312647 |
+ |
(AATA)n |
Simple_repeat |
| scaffold23878 |
312770 |
313132 |
- |
RS606 |
Unspecified |
| scaffold23878 |
315007 |
315140 |
+ |
RS10164 |
Unspecified |
| scaffold23878 |
315346 |
315587 |
- |
RS536 |
Unspecified |
| scaffold23878 |
315585 |
315650 |
- |
RS536 |
Unspecified |
| scaffold23878 |
317400 |
317466 |
+ |
A-rich |
Low_complexity |
| scaffold23878 |
317702 |
317869 |
+ |
RS7300 |
Unspecified |
| scaffold23878 |
318279 |
318567 |
- |
PL9 |
Unspecified |
| scaffold23878 |
318908 |
318943 |
+ |
(TAAAAA)n |
Simple_repeat |