scaffold2414 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold2414 |
887 |
934 |
+ |
RS4032 |
Unspecified |
| scaffold2414 |
1283 |
1717 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold2414 |
3057 |
3095 |
+ |
(TAATTCA)n |
Simple_repeat |
| scaffold2414 |
3184 |
3451 |
+ |
RS1 |
Unspecified |
| scaffold2414 |
3739 |
3787 |
+ |
RS18078 |
Unspecified |
| scaffold2414 |
4085 |
4179 |
+ |
RS4475 |
Unspecified |
| scaffold2414 |
4097 |
4184 |
- |
RS16836 |
Unspecified |
| scaffold2414 |
7298 |
7357 |
- |
Copia-69_PT-I |
LTR/Copia |
| scaffold2414 |
7360 |
7511 |
+ |
RS1155 |
Unspecified |
| scaffold2414 |
7641 |
7799 |
+ |
RS73 |
Unspecified |
| scaffold2414 |
8496 |
8527 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold2414 |
12532 |
12577 |
- |
RS17699 |
Unspecified |
| scaffold2414 |
12546 |
12802 |
- |
RS1 |
Unspecified |
| scaffold2414 |
17575 |
17599 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
17742 |
18148 |
- |
RS1505 |
Unspecified |
| scaffold2414 |
18948 |
18972 |
+ |
(TA)n |
Simple_repeat |
| scaffold2414 |
19091 |
19129 |
- |
RS7234 |
Unspecified |
| scaffold2414 |
19237 |
19271 |
+ |
(AATTAGG)n |
Simple_repeat |
| scaffold2414 |
19504 |
19542 |
+ |
(AAATA)n |
Simple_repeat |
| scaffold2414 |
25142 |
25197 |
- |
RLG_scMaximus_1_5-I |
LTR/Copia |
| scaffold2414 |
25155 |
25212 |
- |
Gypsy-17_GM-I |
LTR/Gypsy |
| scaffold2414 |
26126 |
26142 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
27597 |
27670 |
+ |
(CTT)n |
Simple_repeat |
| scaffold2414 |
28730 |
28780 |
+ |
RS958 |
Unspecified |
| scaffold2414 |
28810 |
28928 |
- |
RS3097 |
Unspecified |
| scaffold2414 |
29888 |
29934 |
+ |
(TAACTT)n |
Simple_repeat |
| scaffold2414 |
30064 |
30091 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
30280 |
30371 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
30411 |
30525 |
+ |
(ATC)n |
Simple_repeat |
| scaffold2414 |
33326 |
33345 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
35777 |
35815 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
39176 |
39355 |
- |
RS1596 |
Unspecified |
| scaffold2414 |
39645 |
39686 |
+ |
(ATGGATG)n |
Simple_repeat |
| scaffold2414 |
39712 |
39741 |
+ |
(CATC)n |
Simple_repeat |
| scaffold2414 |
39870 |
39934 |
+ |
GA-rich |
Low_complexity |
| scaffold2414 |
39870 |
40105 |
+ |
GA-rich |
Low_complexity |
| scaffold2414 |
39915 |
40105 |
- |
RS15695 |
Unspecified |
| scaffold2414 |
39937 |
40308 |
- |
RS539 |
Unspecified |
| scaffold2414 |
40434 |
40484 |
+ |
(ATA)n |
Simple_repeat |
| scaffold2414 |
40504 |
40700 |
+ |
PL322 |
Unspecified |
| scaffold2414 |
40813 |
40855 |
+ |
(TTCATT)n |
Simple_repeat |
| scaffold2414 |
40883 |
41504 |
- |
RS1596 |
Unspecified |
| scaffold2414 |
41917 |
42010 |
+ |
(ATTTTA)n |
Simple_repeat |
| scaffold2414 |
42294 |
42319 |
+ |
(ATCAT)n |
Simple_repeat |
| scaffold2414 |
42364 |
42424 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
43175 |
43502 |
+ |
RS454 |
Unspecified |
| scaffold2414 |
43693 |
44589 |
+ |
RS2725 |
Unspecified |
| scaffold2414 |
45130 |
45192 |
+ |
(GGC)n |
Simple_repeat |
| scaffold2414 |
45451 |
45501 |
+ |
(ATCATCAT)n |
Simple_repeat |
| scaffold2414 |
45977 |
46022 |
+ |
(GGTGCT)n |
Simple_repeat |
| scaffold2414 |
46810 |
46968 |
+ |
RS347 |
Unspecified |
| scaffold2414 |
46999 |
47045 |
+ |
(ATATACT)n |
Simple_repeat |
| scaffold2414 |
47363 |
47381 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
50705 |
51496 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold2414 |
50748 |
50929 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold2414 |
51233 |
51292 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold2414 |
51353 |
53875 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold2414 |
51596 |
52872 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold2414 |
53143 |
53820 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold2414 |
53897 |
53937 |
+ |
RS4475 |
Unspecified |
| scaffold2414 |
54453 |
54508 |
+ |
(AGCTTTC)n |
Simple_repeat |
| scaffold2414 |
54798 |
54891 |
+ |
(AATTGGA)n |
Simple_repeat |
| scaffold2414 |
55457 |
55486 |
+ |
(AATT)n |
Simple_repeat |
| scaffold2414 |
57323 |
57354 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
58841 |
59043 |
- |
RS26 |
Unspecified |
| scaffold2414 |
59481 |
59518 |
+ |
(AATTTG)n |
Simple_repeat |
| scaffold2414 |
59882 |
59977 |
+ |
RS16382 |
Unspecified |
| scaffold2414 |
60044 |
60076 |
+ |
(ATCA)n |
Simple_repeat |
| scaffold2414 |
60613 |
60672 |
+ |
(GGT)n |
Simple_repeat |
| scaffold2414 |
60914 |
60937 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
60976 |
60994 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
61935 |
61968 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
62050 |
62074 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
62202 |
62353 |
+ |
RS549 |
Unspecified |
| scaffold2414 |
62352 |
62407 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
62712 |
62925 |
+ |
RS792 |
Unspecified |
| scaffold2414 |
63169 |
63261 |
+ |
(AATTATT)n |
Simple_repeat |
| scaffold2414 |
63278 |
63484 |
+ |
RS792 |
Unspecified |
| scaffold2414 |
65204 |
65259 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
65856 |
66012 |
+ |
RS2308 |
Unspecified |
| scaffold2414 |
66281 |
66318 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold2414 |
66520 |
66551 |
+ |
(TTC)n |
Simple_repeat |
| scaffold2414 |
66994 |
67032 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
67144 |
67198 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
68647 |
68708 |
+ |
(TCACTC)n |
Simple_repeat |
| scaffold2414 |
71598 |
71622 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
72087 |
72112 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
73338 |
73412 |
+ |
RS4475 |
Unspecified |
| scaffold2414 |
73673 |
73725 |
+ |
(CTTTTTT)n |
Simple_repeat |
| scaffold2414 |
74856 |
75415 |
+ |
PL748 |
Unspecified |
| scaffold2414 |
75860 |
75882 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
76504 |
76525 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold2414 |
76893 |
77184 |
+ |
RS586 |
Unspecified |
| scaffold2414 |
78178 |
78211 |
+ |
(AACAA)n |
Simple_repeat |
| scaffold2414 |
78719 |
78753 |
+ |
(TCTAC)n |
Simple_repeat |
| scaffold2414 |
78933 |
78993 |
+ |
(CTTCCT)n |
Simple_repeat |
| scaffold2414 |
78994 |
79026 |
+ |
(TCT)n |
Simple_repeat |
| scaffold2414 |
80223 |
80244 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold2414 |
80596 |
80630 |
+ |
(TTAGAT)n |
Simple_repeat |
| scaffold2414 |
82842 |
82868 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
83074 |
83092 |
+ |
(TAA)n |
Simple_repeat |
| scaffold2414 |
83789 |
83818 |
+ |
(AGC)n |
Simple_repeat |
| scaffold2414 |
85412 |
85460 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
89216 |
89242 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
89365 |
89383 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
89502 |
89532 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
90397 |
90425 |
+ |
(CAATC)n |
Simple_repeat |
| scaffold2414 |
90658 |
90697 |
+ |
(CCTCACA)n |
Simple_repeat |
| scaffold2414 |
90851 |
90904 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold2414 |
91094 |
91147 |
- |
RS12444 |
Unspecified |
| scaffold2414 |
95768 |
95933 |
- |
RS4932 |
Unspecified |
| scaffold2414 |
96895 |
96965 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
97228 |
97282 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
97443 |
97478 |
+ |
(TCAA)n |
Simple_repeat |
| scaffold2414 |
97481 |
97517 |
+ |
(GTAATT)n |
Simple_repeat |
| scaffold2414 |
98203 |
98258 |
- |
RS972 |
Unspecified |
| scaffold2414 |
98277 |
98395 |
+ |
RS1746 |
Unspecified |
| scaffold2414 |
98403 |
98531 |
+ |
G-rich |
Low_complexity |
| scaffold2414 |
98524 |
98654 |
+ |
RS9599 |
Unspecified |
| scaffold2414 |
98676 |
98707 |
+ |
(CGGGC)n |
Simple_repeat |
| scaffold2414 |
100678 |
100929 |
- |
RS4 |
Unspecified |
| scaffold2414 |
102205 |
102285 |
+ |
(TCA)n |
Simple_repeat |
| scaffold2414 |
102963 |
102984 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2414 |
102991 |
103025 |
+ |
(TGGTGT)n |
Simple_repeat |
| scaffold2414 |
103432 |
103458 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold2414 |
103674 |
103708 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold2414 |
103873 |
103918 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
104740 |
104834 |
- |
RS4475 |
Unspecified |
| scaffold2414 |
104864 |
104884 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2414 |
106349 |
106593 |
- |
RS4 |
Unspecified |
| scaffold2414 |
107082 |
107183 |
+ |
RS285 |
Unspecified |
| scaffold2414 |
107190 |
107212 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold2414 |
108368 |
108418 |
+ |
(ATATAA)n |
Simple_repeat |
| scaffold2414 |
109136 |
109181 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold2414 |
109664 |
109716 |
+ |
(TA)n |
Simple_repeat |
| scaffold2414 |
110296 |
110384 |
- |
RS4475 |
Unspecified |
| scaffold2414 |
110571 |
110614 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold2414 |
110742 |
110780 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold2414 |
111769 |
111785 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
112133 |
112154 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
112404 |
112422 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
112543 |
112616 |
+ |
(TTATTTT)n |
Simple_repeat |
| scaffold2414 |
112992 |
113008 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
113064 |
113116 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
113349 |
113380 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold2414 |
113747 |
114240 |
- |
PL271 |
Unspecified |
| scaffold2414 |
114544 |
114670 |
+ |
(AGCTG)n |
Simple_repeat |
| scaffold2414 |
114678 |
114981 |
+ |
PL767 |
Unspecified |
| scaffold2414 |
116168 |
116222 |
+ |
(TTGT)n |
Simple_repeat |
| scaffold2414 |
116275 |
116321 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
116944 |
116969 |
+ |
(TATTGA)n |
Simple_repeat |
| scaffold2414 |
118220 |
118238 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
118562 |
118738 |
- |
RS371 |
Unspecified |
| scaffold2414 |
119059 |
119084 |
+ |
(TAT)n |
Simple_repeat |
| scaffold2414 |
119606 |
119620 |
+ |
Gypsy-108_SB-I |
LTR/Gypsy |
| scaffold2414 |
119621 |
119750 |
- |
HAT-N8_Mad |
DNA/hAT-Tag1 |
| scaffold2414 |
119920 |
119997 |
- |
hAT-9_SBi |
DNA/hAT-Tag1 |
| scaffold2414 |
119998 |
120021 |
+ |
Gypsy-108_SB-I |
LTR/Gypsy |
| scaffold2414 |
120896 |
120987 |
+ |
RS342 |
Unspecified |
| scaffold2414 |
120912 |
121113 |
+ |
RS342 |
Unspecified |
| scaffold2414 |
121495 |
121632 |
- |
RS283 |
Unspecified |
| scaffold2414 |
122111 |
122133 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
122399 |
122477 |
+ |
(TATTTA)n |
Simple_repeat |
| scaffold2414 |
122611 |
122689 |
+ |
(TTA)n |
Simple_repeat |
| scaffold2414 |
123287 |
123331 |
+ |
(ATTCATA)n |
Simple_repeat |
| scaffold2414 |
124170 |
124203 |
+ |
(TTT)n |
Simple_repeat |
| scaffold2414 |
124275 |
124338 |
+ |
(TAATAAT)n |
Simple_repeat |
| scaffold2414 |
126903 |
126920 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
127522 |
127569 |
+ |
(ATTATATA)n |
Simple_repeat |
| scaffold2414 |
128031 |
128283 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold2414 |
128549 |
128662 |
- |
PL436 |
Unspecified |
| scaffold2414 |
128559 |
128653 |
- |
RS16382 |
Unspecified |
| scaffold2414 |
129584 |
129611 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
130021 |
130080 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
130268 |
130364 |
- |
PL754 |
Unspecified |
| scaffold2414 |
130852 |
130892 |
+ |
(AAT)n |
Simple_repeat |
| scaffold2414 |
132249 |
132504 |
+ |
RS4 |
Unspecified |
| scaffold2414 |
133115 |
133211 |
+ |
RS4475 |
Unspecified |
| scaffold2414 |
133265 |
134530 |
- |
PL676 |
Unspecified |
| scaffold2414 |
134969 |
135074 |
+ |
RS6150 |
Unspecified |
| scaffold2414 |
135077 |
135103 |
+ |
(AT)n |
Simple_repeat |
| scaffold2414 |
135141 |
135335 |
- |
RS2126 |
Unspecified |
| scaffold2414 |
136037 |
136226 |
- |
RS3094 |
Unspecified |
| scaffold2414 |
136519 |
136619 |
- |
RS3094 |
Unspecified |
| scaffold2414 |
136648 |
136685 |
+ |
(ATAATT)n |
Simple_repeat |
| scaffold2414 |
136804 |
136907 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
137490 |
137514 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
137682 |
137742 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold2414 |
137821 |
137935 |
- |
RS3316 |
Unspecified |
| scaffold2414 |
138197 |
138413 |
- |
RS11209 |
Unspecified |
| scaffold2414 |
138391 |
138501 |
+ |
RS2051 |
Unspecified |
| scaffold2414 |
138410 |
138501 |
- |
RS946 |
Unspecified |
| scaffold2414 |
138514 |
138556 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold2414 |
138696 |
138756 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold2414 |
138906 |
138938 |
+ |
(ATGATA)n |
Simple_repeat |
| scaffold2414 |
139061 |
139148 |
+ |
(TTAATAT)n |
Simple_repeat |
| scaffold2414 |
139549 |
139623 |
- |
RS750 |
Unspecified |
| scaffold2414 |
139803 |
139869 |
+ |
(AATATT)n |
Simple_repeat |
| scaffold2414 |
139944 |
139974 |
+ |
(TAATAT)n |
Simple_repeat |
| scaffold2414 |
140251 |
140269 |
+ |
(CAA)n |
Simple_repeat |
| scaffold2414 |
140375 |
140388 |
+ |
(CAT)n |
Simple_repeat |
| scaffold2414 |
140389 |
140457 |
+ |
ATCopia24I |
LTR/Copia |
| scaffold2414 |
140676 |
140698 |
+ |
(ATC)n |
Simple_repeat |
| scaffold2414 |
140871 |
140920 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold2414 |
140921 |
140947 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
140948 |
140960 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold2414 |
141097 |
141139 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2414 |
141335 |
141398 |
+ |
(TATATT)n |
Simple_repeat |
| scaffold2414 |
141399 |
141427 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold2414 |
141428 |
141517 |
+ |
(TATATT)n |
Simple_repeat |
| scaffold2414 |
142148 |
142207 |
- |
RS549 |
Unspecified |
| scaffold2414 |
142495 |
142511 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
142983 |
143009 |
+ |
(T)n |
Simple_repeat |
| scaffold2414 |
143382 |
143434 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
143410 |
143462 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold2414 |
143683 |
143913 |
- |
RS18 |
Unspecified |
| scaffold2414 |
148347 |
148741 |
+ |
PL744 |
Unspecified |
| scaffold2414 |
148752 |
148809 |
+ |
RS9876 |
Unspecified |
| scaffold2414 |
148803 |
148845 |
+ |
PL270 |
Unspecified |
| scaffold2414 |
149005 |
149066 |
+ |
A-rich |
Low_complexity |
| scaffold2414 |
149152 |
149364 |
- |
PL744 |
Unspecified |
| scaffold2414 |
149437 |
149822 |
- |
PL744 |
Unspecified |
| scaffold2414 |
150113 |
150139 |
+ |
(A)n |
Simple_repeat |
| scaffold2414 |
151973 |
152033 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold2414 |
152236 |
152587 |
+ |
RS15846 |
Unspecified |
| scaffold2414 |
152734 |
152873 |
+ |
RS13571 |
Unspecified |