scaffold24375 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold24375 |
910 |
1704 |
- |
PL921 |
Unspecified |
| scaffold24375 |
1368 |
2113 |
+ |
Gypsy-13_TA-I |
LTR/Gypsy |
| scaffold24375 |
1368 |
1435 |
+ |
Gypsy-13_TA-I |
LTR/Gypsy |
| scaffold24375 |
1417 |
2113 |
- |
PL730 |
Unspecified |
| scaffold24375 |
2119 |
2208 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold24375 |
2470 |
2500 |
+ |
(TAC)n |
Simple_repeat |
| scaffold24375 |
2506 |
2532 |
+ |
(AC)n |
Simple_repeat |
| scaffold24375 |
3414 |
3465 |
+ |
A-rich |
Low_complexity |
| scaffold24375 |
3484 |
3666 |
- |
PL350 |
Unspecified |
| scaffold24375 |
3666 |
3876 |
+ |
PL111 |
Unspecified |
| scaffold24375 |
4739 |
4823 |
+ |
(AATACG)n |
Simple_repeat |
| scaffold24375 |
4828 |
4935 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold24375 |
5795 |
5854 |
+ |
(TGTTA)n |
Simple_repeat |
| scaffold24375 |
6412 |
6749 |
+ |
RS6924 |
Unspecified |
| scaffold24375 |
7765 |
8435 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold24375 |
7765 |
8271 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold24375 |
8148 |
8209 |
+ |
LATIDU2_TM-int |
LTR/Gypsy |
| scaffold24375 |
8208 |
8435 |
- |
PL66 |
Unspecified |
| scaffold24375 |
8561 |
8622 |
+ |
LATIDU2_TM-int |
LTR/Gypsy |
| scaffold24375 |
8621 |
8724 |
- |
PL66 |
Unspecified |
| scaffold24375 |
8921 |
8994 |
+ |
(TTT)n |
Simple_repeat |
| scaffold24375 |
10201 |
10366 |
+ |
PL699 |
Unspecified |
| scaffold24375 |
10823 |
10873 |
+ |
(GGT)n |
Simple_repeat |
| scaffold24375 |
11369 |
11409 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold24375 |
12524 |
12589 |
+ |
A-rich |
Low_complexity |
| scaffold24375 |
12675 |
12816 |
- |
RS4505 |
Unspecified |
| scaffold24375 |
13021 |
13049 |
+ |
(T)n |
Simple_repeat |
| scaffold24375 |
13361 |
13394 |
+ |
GA-rich |
Low_complexity |
| scaffold24375 |
13408 |
13502 |
+ |
RS365 |
Unspecified |
| scaffold24375 |
13659 |
14552 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold24375 |
13949 |
14344 |
- |
COPIA-I_MT |
LTR/Copia |
| scaffold24375 |
14622 |
14809 |
+ |
RS12859 |
Unspecified |
| scaffold24375 |
14861 |
15014 |
+ |
RS3440 |
Unspecified |
| scaffold24375 |
15120 |
15365 |
- |
RS3707 |
Unspecified |
| scaffold24375 |
15187 |
15411 |
- |
RS1995 |
Unspecified |
| scaffold24375 |
15403 |
16092 |
+ |
RS3344 |
Unspecified |
| scaffold24375 |
17135 |
17157 |
+ |
(TACA)n |
Simple_repeat |
| scaffold24375 |
19453 |
19911 |
- |
RS3344 |
Unspecified |
| scaffold24375 |
20421 |
20451 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold24375 |
20881 |
20949 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold24375 |
21807 |
21826 |
+ |
(CA)n |
Simple_repeat |
| scaffold24375 |
22278 |
22319 |
+ |
(T)n |
Simple_repeat |
| scaffold24375 |
22358 |
22620 |
- |
RS365 |
Unspecified |
| scaffold24375 |
22645 |
22888 |
+ |
RS4 |
Unspecified |
| scaffold24375 |
23609 |
23641 |
+ |
A-rich |
Low_complexity |
| scaffold24375 |
23997 |
24072 |
+ |
(T)n |
Simple_repeat |
| scaffold24375 |
24567 |
24600 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold24375 |
25272 |
25310 |
+ |
(TAATATG)n |
Simple_repeat |
| scaffold24375 |
28554 |
28719 |
+ |
RS1 |
Unspecified |
| scaffold24375 |
28721 |
28737 |
+ |
(T)n |
Simple_repeat |
| scaffold24375 |
28810 |
28854 |
+ |
(TATTTTC)n |
Simple_repeat |
| scaffold24375 |
28951 |
29202 |
- |
RS106 |
Unspecified |
| scaffold24375 |
31317 |
31356 |
+ |
G-rich |
Low_complexity |
| scaffold24375 |
31754 |
31833 |
+ |
RS981 |
Unspecified |
| scaffold24375 |
31840 |
31855 |
+ |
(TA)n |
Simple_repeat |
| scaffold24375 |
31856 |
31904 |
+ |
(ATATATC)n |
Simple_repeat |
| scaffold24375 |
31905 |
31914 |
+ |
(TA)n |
Simple_repeat |
| scaffold24375 |
32019 |
32060 |
+ |
(TCTTCA)n |
Simple_repeat |
| scaffold24375 |
32374 |
32542 |
+ |
(T)n |
Simple_repeat |
| scaffold24375 |
32374 |
32405 |
+ |
(T)n |
Simple_repeat |
| scaffold24375 |
32397 |
32542 |
+ |
RS683 |
Unspecified |
| scaffold24375 |
32611 |
32702 |
- |
LT1_EPa |
LTR? |
| scaffold24375 |
32703 |
32731 |
+ |
ATRAN |
DNA? |
| scaffold24375 |
33272 |
33316 |
+ |
A-rich |
Low_complexity |
| scaffold24375 |
33481 |
33549 |
- |
PL141 |
Unspecified |
| scaffold24375 |
34143 |
34182 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold24375 |
34390 |
34456 |
+ |
A-rich |
Low_complexity |
| scaffold24375 |
35336 |
35360 |
+ |
(AATG)n |
Simple_repeat |
| scaffold24375 |
35470 |
35512 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold24375 |
35809 |
35927 |
+ |
MtPH-A6-3-Ia |
DNA/PIF-Harbinger |
| scaffold24375 |
36142 |
36497 |
- |
PL9 |
Unspecified |
| scaffold24375 |
36353 |
36518 |
- |
PL9 |
Unspecified |
| scaffold24375 |
36599 |
36628 |
+ |
(T)n |
Simple_repeat |
| scaffold24375 |
36633 |
36661 |
+ |
(AATA)n |
Simple_repeat |
| scaffold24375 |
36781 |
36800 |
+ |
(T)n |
Simple_repeat |
| scaffold24375 |
37083 |
37123 |
- |
RS18371 |
Unspecified |
| scaffold24375 |
38044 |
38065 |
+ |
(ATTG)n |
Simple_repeat |
| scaffold24375 |
40527 |
40557 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold24375 |
40847 |
41034 |
+ |
RS7797 |
Unspecified |
| scaffold24375 |
41070 |
41125 |
+ |
(TT)n |
Simple_repeat |
| scaffold24375 |
41827 |
41911 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold24375 |
41940 |
41986 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold24375 |
42091 |
42121 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold24375 |
42754 |
42774 |
+ |
(T)n |
Simple_repeat |
| scaffold24375 |
42987 |
43183 |
- |
RS18371 |
Unspecified |
| scaffold24375 |
44467 |
44581 |
- |
Copia-58_VV-LTR |
LTR/Copia |
| scaffold24375 |
44709 |
44740 |
+ |
A-rich |
Low_complexity |
| scaffold24375 |
44979 |
45583 |
- |
Copia-2_SL-I |
LTR/Copia |
| scaffold24375 |
45597 |
45716 |
- |
Copia-2_SL-I |
LTR/Copia |
| scaffold24375 |
45940 |
46731 |
- |
Copia-2_SL-I |
LTR/Copia |
| scaffold24375 |
47422 |
47443 |
+ |
(A)n |
Simple_repeat |
| scaffold24375 |
47450 |
47517 |
+ |
Gypsy-34_Mad-I |
LTR/Gypsy |
| scaffold24375 |
48284 |
48547 |
+ |
PL433 |
Unspecified |
| scaffold24375 |
49078 |
49376 |
+ |
RS12622 |
Unspecified |
| scaffold24375 |
51228 |
51287 |
+ |
(ACC)n |
Simple_repeat |
| scaffold24375 |
52030 |
52759 |
+ |
RS13658 |
Unspecified |
| scaffold24375 |
52606 |
52927 |
+ |
RS2637 |
Unspecified |
| scaffold24375 |
54993 |
55031 |
+ |
(TTGACT)n |
Simple_repeat |
| scaffold24375 |
55301 |
55766 |
+ |
RS13658 |
Unspecified |
| scaffold24375 |
56412 |
56577 |
+ |
(CCA)n |
Simple_repeat |
| scaffold24375 |
57687 |
57951 |
- |
RS356 |
Unspecified |
| scaffold24375 |
57954 |
57995 |
+ |
(ATT)n |
Simple_repeat |
| scaffold24375 |
58689 |
58719 |
+ |
(TAA)n |
Simple_repeat |
| scaffold24375 |
59079 |
59108 |
+ |
(A)n |
Simple_repeat |
| scaffold24375 |
59136 |
59164 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold24375 |
61669 |
61944 |
+ |
RS354 |
Unspecified |
| scaffold24375 |
62311 |
62481 |
+ |
RS429 |
Unspecified |
| scaffold24375 |
63170 |
63234 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold24375 |
64070 |
64342 |
- |
RS9872 |
Unspecified |
| scaffold24375 |
64584 |
64774 |
- |
RS13012 |
Unspecified |
| scaffold24375 |
64771 |
64830 |
- |
RS926 |
Unspecified |
| scaffold24375 |
64907 |
65042 |
- |
RS14426 |
Unspecified |
| scaffold24375 |
66514 |
66564 |
+ |
(TTG)n |
Simple_repeat |
| scaffold24375 |
67546 |
67558 |
+ |
(TGTT)n |
Simple_repeat |
| scaffold24375 |
67559 |
67597 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold24375 |
67598 |
67607 |
+ |
(TGTT)n |
Simple_repeat |
| scaffold24375 |
68225 |
68295 |
+ |
(AAT)n |
Simple_repeat |
| scaffold24375 |
70030 |
70079 |
+ |
(AACTA)n |
Simple_repeat |
| scaffold24375 |
70441 |
70525 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold24375 |
74370 |
74406 |
+ |
(TTTATGT)n |
Simple_repeat |
| scaffold24375 |
74407 |
74425 |
+ |
(TATG)n |
Simple_repeat |
| scaffold24375 |
74479 |
74508 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold24375 |
76571 |
76601 |
+ |
A-rich |
Low_complexity |
| scaffold24375 |
77027 |
77114 |
- |
LTR-2_MX-LTR |
LTR |
| scaffold24375 |
78226 |
78250 |
+ |
(T)n |
Simple_repeat |
| scaffold24375 |
79119 |
79146 |
+ |
(T)n |
Simple_repeat |
| scaffold24375 |
80226 |
80329 |
- |
RS12449 |
Unspecified |
| scaffold24375 |
81105 |
81507 |
+ |
RS512 |
Unspecified |
| scaffold24375 |
81512 |
81551 |
+ |
A-rich |
Low_complexity |
| scaffold24375 |
81806 |
81828 |
+ |
(A)n |
Simple_repeat |
| scaffold24375 |
82758 |
82838 |
- |
RS727 |
Unspecified |
| scaffold24375 |
82862 |
82992 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold24375 |
83386 |
83648 |
+ |
PL398 |
Unspecified |
| scaffold24375 |
85885 |
85953 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold24375 |
86266 |
86480 |
- |
RS4 |
Unspecified |
| scaffold24375 |
88771 |
88838 |
+ |
Copia-32-I_VV |
LTR/Copia |
| scaffold24375 |
89822 |
89972 |
- |
RS663 |
Unspecified |
| scaffold24375 |
91151 |
91441 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold24375 |
91178 |
91401 |
+ |
Copia-32-I_VV |
LTR/Copia |
| scaffold24375 |
91718 |
91759 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold24375 |
91864 |
91888 |
+ |
(A)n |
Simple_repeat |
| scaffold24375 |
92301 |
93127 |
- |
hAT-4_PTr |
DNA/hAT-Tip100 |
| scaffold24375 |
93194 |
93291 |
+ |
L1-15_GM |
LINE/L1 |
| scaffold24375 |
94421 |
94547 |
+ |
RS8764 |
Unspecified |
| scaffold24375 |
94616 |
94786 |
+ |
RS8 |
Unspecified |
| scaffold24375 |
94891 |
95146 |
- |
RS625 |
Unspecified |