scaffold2452 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold2452 |
1 |
21 |
+ |
(T)n |
Simple_repeat |
| scaffold2452 |
1393 |
2803 |
- |
L1-14_Mad |
LINE/L1 |
| scaffold2452 |
3499 |
3836 |
- |
L1-16_Mad |
LINE/L1 |
| scaffold2452 |
5323 |
5362 |
+ |
(TCAGTG)n |
Simple_repeat |
| scaffold2452 |
5554 |
5684 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold2452 |
5892 |
5957 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
8060 |
8331 |
+ |
Copia-32-I_VV |
LTR/Copia |
| scaffold2452 |
9333 |
9376 |
+ |
(GATGAA)n |
Simple_repeat |
| scaffold2452 |
9690 |
9968 |
+ |
RS1 |
Unspecified |
| scaffold2452 |
10064 |
10510 |
+ |
PL565 |
Unspecified |
| scaffold2452 |
10802 |
10954 |
+ |
RS2666 |
Unspecified |
| scaffold2452 |
14237 |
14508 |
+ |
Copia-32-I_VV |
LTR/Copia |
| scaffold2452 |
15510 |
15553 |
+ |
(GATGAA)n |
Simple_repeat |
| scaffold2452 |
15968 |
16408 |
+ |
PL565 |
Unspecified |
| scaffold2452 |
16626 |
16977 |
+ |
RS614 |
Unspecified |
| scaffold2452 |
17521 |
17581 |
+ |
(AATT)n |
Simple_repeat |
| scaffold2452 |
17951 |
17996 |
+ |
RS148 |
Unspecified |
| scaffold2452 |
18151 |
18203 |
+ |
(CAATTTA)n |
Simple_repeat |
| scaffold2452 |
18978 |
19023 |
+ |
(ATTTTAT)n |
Simple_repeat |
| scaffold2452 |
19335 |
19376 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
20002 |
20080 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
20273 |
20313 |
+ |
(TTTATAA)n |
Simple_repeat |
| scaffold2452 |
25135 |
25206 |
+ |
(TGTTGTT)n |
Simple_repeat |
| scaffold2452 |
25741 |
26708 |
+ |
RS808 |
Unspecified |
| scaffold2452 |
26702 |
26888 |
+ |
RS9869 |
Unspecified |
| scaffold2452 |
27072 |
27094 |
+ |
(A)n |
Simple_repeat |
| scaffold2452 |
27962 |
28070 |
- |
RS998 |
Unspecified |
| scaffold2452 |
28044 |
28171 |
- |
RS15184 |
Unspecified |
| scaffold2452 |
28170 |
28341 |
- |
RS6731 |
Unspecified |
| scaffold2452 |
28515 |
28894 |
+ |
RS447 |
Unspecified |
| scaffold2452 |
28821 |
29006 |
- |
RS444 |
Unspecified |
| scaffold2452 |
28875 |
29283 |
+ |
RS481 |
Unspecified |
| scaffold2452 |
29361 |
29482 |
- |
Ogre-LE1_I-int |
LTR/Gypsy |
| scaffold2452 |
29939 |
30120 |
- |
RS420 |
Unspecified |
| scaffold2452 |
31001 |
31422 |
- |
Gypsy21-PTR_I-int |
LTR/Gypsy |
| scaffold2452 |
32846 |
32869 |
+ |
(T)n |
Simple_repeat |
| scaffold2452 |
33054 |
33138 |
+ |
(GGT)n |
Simple_repeat |
| scaffold2452 |
33392 |
33453 |
+ |
(GCC)n |
Simple_repeat |
| scaffold2452 |
33491 |
33563 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold2452 |
33638 |
33668 |
+ |
(A)n |
Simple_repeat |
| scaffold2452 |
35904 |
35926 |
+ |
(A)n |
Simple_repeat |
| scaffold2452 |
37117 |
37306 |
+ |
RS1127 |
Unspecified |
| scaffold2452 |
37117 |
37390 |
+ |
PL621 |
Unspecified |
| scaffold2452 |
37376 |
38074 |
- |
Copia-23_BRa-I |
LTR/Copia |
| scaffold2452 |
38192 |
38515 |
- |
Copia-74_ST-I |
LTR/Copia |
| scaffold2452 |
39392 |
39553 |
+ |
RS1127 |
Unspecified |
| scaffold2452 |
39553 |
39744 |
- |
RS324 |
Unspecified |
| scaffold2452 |
39904 |
39949 |
+ |
(AAGTCA)n |
Simple_repeat |
| scaffold2452 |
40509 |
40534 |
+ |
(A)n |
Simple_repeat |
| scaffold2452 |
41049 |
41077 |
+ |
(AATA)n |
Simple_repeat |
| scaffold2452 |
41108 |
41432 |
- |
RS160 |
Unspecified |
| scaffold2452 |
41840 |
41890 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
41933 |
42356 |
+ |
PL593 |
Unspecified |
| scaffold2452 |
44111 |
44155 |
+ |
(CCCTCCA)n |
Simple_repeat |
| scaffold2452 |
45077 |
45187 |
- |
RS1043 |
Unspecified |
| scaffold2452 |
46525 |
46560 |
+ |
G-rich |
Low_complexity |
| scaffold2452 |
47343 |
47375 |
+ |
(T)n |
Simple_repeat |
| scaffold2452 |
50707 |
50765 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
52072 |
52101 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
52489 |
52740 |
+ |
PL571 |
Unspecified |
| scaffold2452 |
53082 |
53221 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold2452 |
53379 |
53565 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold2452 |
53761 |
54130 |
+ |
PL438 |
Unspecified |
| scaffold2452 |
54244 |
54287 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold2452 |
54422 |
54531 |
- |
PL276 |
Unspecified |
| scaffold2452 |
55618 |
55643 |
+ |
(T)n |
Simple_repeat |
| scaffold2452 |
55763 |
55961 |
- |
RS2452 |
Unspecified |
| scaffold2452 |
55965 |
55983 |
+ |
(A)n |
Simple_repeat |
| scaffold2452 |
56779 |
56843 |
- |
RS163 |
Unspecified |
| scaffold2452 |
56846 |
56962 |
- |
PL306 |
Unspecified |
| scaffold2452 |
56961 |
57120 |
- |
PL306 |
Unspecified |
| scaffold2452 |
56979 |
57160 |
- |
RS163 |
Unspecified |
| scaffold2452 |
59385 |
59468 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold2452 |
59494 |
59552 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold2452 |
59607 |
59630 |
+ |
(A)n |
Simple_repeat |
| scaffold2452 |
63309 |
63407 |
- |
PL340 |
Unspecified |
| scaffold2452 |
65090 |
65152 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
66021 |
66043 |
+ |
(CAA)n |
Simple_repeat |
| scaffold2452 |
66539 |
66679 |
+ |
(ATAT)n |
Simple_repeat |
| scaffold2452 |
67620 |
67650 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold2452 |
67990 |
68024 |
+ |
(AATT)n |
Simple_repeat |
| scaffold2452 |
68272 |
68288 |
+ |
(A)n |
Simple_repeat |
| scaffold2452 |
68951 |
68985 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
69386 |
69443 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold2452 |
69754 |
69810 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
70257 |
70311 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold2452 |
70719 |
70948 |
- |
RS13348 |
Unspecified |
| scaffold2452 |
70784 |
70980 |
+ |
RS757 |
Unspecified |
| scaffold2452 |
71300 |
71359 |
+ |
RS1259 |
Unspecified |
| scaffold2452 |
71308 |
71539 |
+ |
RS594 |
Unspecified |
| scaffold2452 |
71542 |
71766 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold2452 |
71542 |
71839 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold2452 |
71747 |
71839 |
+ |
RS1259 |
Unspecified |
| scaffold2452 |
71759 |
71839 |
+ |
RS2341 |
Unspecified |
| scaffold2452 |
71834 |
72029 |
+ |
RS2341 |
Unspecified |
| scaffold2452 |
72129 |
72165 |
+ |
(TGAAGAT)n |
Simple_repeat |
| scaffold2452 |
72277 |
72318 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold2452 |
72319 |
72706 |
+ |
PL223 |
Unspecified |
| scaffold2452 |
72822 |
73151 |
- |
RS1920 |
Unspecified |
| scaffold2452 |
73148 |
73318 |
- |
RS13061 |
Unspecified |
| scaffold2452 |
73314 |
73383 |
+ |
RS594 |
Unspecified |
| scaffold2452 |
74031 |
74066 |
+ |
(T)n |
Simple_repeat |
| scaffold2452 |
75174 |
75212 |
+ |
(AATAT)n |
Simple_repeat |
| scaffold2452 |
75425 |
75669 |
+ |
RS4 |
Unspecified |
| scaffold2452 |
75914 |
75978 |
+ |
(ATATC)n |
Simple_repeat |
| scaffold2452 |
75984 |
76161 |
- |
RS952 |
Unspecified |
| scaffold2452 |
76094 |
76281 |
+ |
RS1785 |
Unspecified |
| scaffold2452 |
76287 |
76448 |
- |
RS952 |
Unspecified |
| scaffold2452 |
76388 |
76634 |
- |
RS952 |
Unspecified |
| scaffold2452 |
77491 |
77670 |
- |
RS233 |
Unspecified |
| scaffold2452 |
77510 |
77676 |
+ |
RS2719 |
Unspecified |
| scaffold2452 |
78184 |
78221 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold2452 |
78270 |
78299 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold2452 |
78908 |
78942 |
+ |
(CGACC)n |
Simple_repeat |
| scaffold2452 |
79386 |
79507 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold2452 |
80038 |
80147 |
+ |
RS1334 |
Unspecified |
| scaffold2452 |
80429 |
80532 |
+ |
RS1726 |
Unspecified |
| scaffold2452 |
80534 |
80570 |
+ |
(TATAATG)n |
Simple_repeat |
| scaffold2452 |
81250 |
81293 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold2452 |
82537 |
82605 |
- |
RS592 |
Unspecified |
| scaffold2452 |
82601 |
82878 |
- |
RS592 |
Unspecified |
| scaffold2452 |
83348 |
83412 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
83663 |
83688 |
+ |
(A)n |
Simple_repeat |
| scaffold2452 |
84164 |
84345 |
+ |
RS1340 |
Unspecified |
| scaffold2452 |
85875 |
86121 |
+ |
RS16888 |
Unspecified |
| scaffold2452 |
86370 |
86478 |
- |
RS711 |
Unspecified |
| scaffold2452 |
86384 |
86502 |
- |
RS3000 |
Unspecified |
| scaffold2452 |
86615 |
86721 |
+ |
RS711 |
Unspecified |
| scaffold2452 |
88783 |
88823 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold2452 |
89088 |
89386 |
+ |
PL9 |
Unspecified |
| scaffold2452 |
89410 |
90334 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold2452 |
90376 |
91031 |
+ |
RS424 |
Unspecified |
| scaffold2452 |
91053 |
92528 |
- |
Copia-71_VV-I |
LTR/Copia |
| scaffold2452 |
93445 |
93462 |
+ |
(A)n |
Simple_repeat |
| scaffold2452 |
94002 |
94728 |
+ |
PL126 |
Unspecified |
| scaffold2452 |
95164 |
95215 |
+ |
(TTA)n |
Simple_repeat |
| scaffold2452 |
95636 |
95849 |
- |
RS4 |
Unspecified |
| scaffold2452 |
95872 |
96099 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold2452 |
96128 |
96171 |
+ |
RS14987 |
Unspecified |
| scaffold2452 |
96382 |
96432 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold2452 |
97055 |
97073 |
+ |
(T)n |
Simple_repeat |
| scaffold2452 |
97742 |
97828 |
+ |
(ATATA)n |
Simple_repeat |
| scaffold2452 |
98744 |
98783 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
99422 |
99661 |
+ |
RS4 |
Unspecified |
| scaffold2452 |
100013 |
100037 |
+ |
(T)n |
Simple_repeat |
| scaffold2452 |
100201 |
100855 |
+ |
OSLINE1_1 |
LINE/L1 |
| scaffold2452 |
101400 |
101531 |
+ |
LINE1-6_OS |
LINE/L1 |
| scaffold2452 |
102719 |
102821 |
- |
RS5576 |
Unspecified |
| scaffold2452 |
103419 |
103436 |
+ |
(A)n |
Simple_repeat |
| scaffold2452 |
104357 |
104764 |
+ |
RS6151 |
Unspecified |
| scaffold2452 |
104877 |
105067 |
- |
RS1630 |
Unspecified |
| scaffold2452 |
105143 |
105524 |
- |
RS8 |
Unspecified |
| scaffold2452 |
106082 |
106111 |
+ |
(TTCAA)n |
Simple_repeat |
| scaffold2452 |
106387 |
106429 |
+ |
(T)n |
Simple_repeat |
| scaffold2452 |
106983 |
107054 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
107069 |
107120 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2452 |
107069 |
107221 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2452 |
107109 |
107221 |
- |
RS285 |
Unspecified |
| scaffold2452 |
107986 |
108062 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold2452 |
108063 |
108276 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold2452 |
109738 |
109783 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
109921 |
109945 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold2452 |
109950 |
109990 |
+ |
(A)n |
Simple_repeat |
| scaffold2452 |
109987 |
110103 |
+ |
PL271 |
Unspecified |
| scaffold2452 |
110891 |
110925 |
+ |
(TCGACC)n |
Simple_repeat |
| scaffold2452 |
111333 |
111689 |
+ |
PL531 |
Unspecified |
| scaffold2452 |
111687 |
111950 |
- |
RS26 |
Unspecified |
| scaffold2452 |
111949 |
112048 |
+ |
PL531 |
Unspecified |
| scaffold2452 |
112528 |
112572 |
+ |
A-rich |
Low_complexity |
| scaffold2452 |
112765 |
112892 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2452 |
113835 |
114134 |
+ |
RS1746 |
Unspecified |
| scaffold2452 |
114536 |
114634 |
+ |
RS84 |
Unspecified |
| scaffold2452 |
115461 |
115578 |
- |
RS1258 |
Unspecified |
| scaffold2452 |
115579 |
115605 |
+ |
(AAT)n |
Simple_repeat |
| scaffold2452 |
115667 |
115707 |
+ |
(TAA)n |
Simple_repeat |
| scaffold2452 |
116890 |
116987 |
+ |
(ATA)n |
Simple_repeat |
| scaffold2452 |
117488 |
117835 |
- |
RS2521 |
Unspecified |