scaffold24594 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold24594 |
845 |
898 |
- |
RS1913 |
Unspecified |
scaffold24594 |
1948 |
2013 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
4271 |
4336 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold24594 |
4337 |
4432 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold24594 |
4903 |
5008 |
- |
RS358 |
Unspecified |
scaffold24594 |
5106 |
6453 |
- |
RS9 |
Unspecified |
scaffold24594 |
5919 |
6045 |
- |
RS1166 |
Unspecified |
scaffold24594 |
6042 |
6118 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold24594 |
6119 |
6329 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold24594 |
6355 |
6425 |
- |
RS148 |
Unspecified |
scaffold24594 |
6870 |
7038 |
- |
RS5 |
Unspecified |
scaffold24594 |
7163 |
7206 |
+ |
(TATT)n |
Simple_repeat |
scaffold24594 |
9118 |
9314 |
+ |
RS152 |
Unspecified |
scaffold24594 |
9322 |
9483 |
- |
RS503 |
Unspecified |
scaffold24594 |
10610 |
10884 |
- |
Copia-113_BRa-I |
LTR/Copia |
scaffold24594 |
14129 |
14353 |
+ |
(AACTG)n |
Simple_repeat |
scaffold24594 |
15677 |
15847 |
+ |
RS15762 |
Unspecified |
scaffold24594 |
15924 |
15963 |
- |
RS11089 |
Unspecified |
scaffold24594 |
16745 |
16805 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
16827 |
16867 |
+ |
(TTTAATT)n |
Simple_repeat |
scaffold24594 |
17115 |
17463 |
- |
RS2543 |
Unspecified |
scaffold24594 |
17753 |
17935 |
+ |
RS178 |
Unspecified |
scaffold24594 |
18893 |
18977 |
- |
RS750 |
Unspecified |
scaffold24594 |
20049 |
20093 |
+ |
(AACTG)n |
Simple_repeat |
scaffold24594 |
20680 |
20874 |
+ |
RS15734 |
Unspecified |
scaffold24594 |
21431 |
21625 |
+ |
RS15734 |
Unspecified |
scaffold24594 |
21968 |
21991 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
22412 |
22464 |
+ |
(AACA)n |
Simple_repeat |
scaffold24594 |
22441 |
22465 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
22476 |
22542 |
+ |
(TATTGTT)n |
Simple_repeat |
scaffold24594 |
22849 |
22889 |
+ |
(ACATT)n |
Simple_repeat |
scaffold24594 |
22887 |
23113 |
- |
RS4 |
Unspecified |
scaffold24594 |
23169 |
23270 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold24594 |
23286 |
23439 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold24594 |
23951 |
23968 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
24276 |
24500 |
- |
RS15470 |
Unspecified |
scaffold24594 |
24285 |
24482 |
- |
RS4 |
Unspecified |
scaffold24594 |
24559 |
24765 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold24594 |
25889 |
26070 |
+ |
RS79 |
Unspecified |
scaffold24594 |
26575 |
26608 |
- |
RS17 |
Unspecified |
scaffold24594 |
33594 |
33639 |
+ |
(GGT)n |
Simple_repeat |
scaffold24594 |
33760 |
33784 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
35337 |
35411 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
35903 |
35941 |
+ |
(TTTAT)n |
Simple_repeat |
scaffold24594 |
36654 |
36831 |
+ |
RS5 |
Unspecified |
scaffold24594 |
39990 |
40016 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
40598 |
40642 |
+ |
(TAATT)n |
Simple_repeat |
scaffold24594 |
40708 |
40750 |
+ |
(TGCAATC)n |
Simple_repeat |
scaffold24594 |
40805 |
40907 |
+ |
RS16140 |
Unspecified |
scaffold24594 |
42785 |
42811 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
43393 |
43437 |
+ |
(TAATT)n |
Simple_repeat |
scaffold24594 |
43503 |
43545 |
+ |
(TGCAATC)n |
Simple_repeat |
scaffold24594 |
43600 |
43702 |
+ |
RS16140 |
Unspecified |
scaffold24594 |
44116 |
44533 |
+ |
PL3 |
Unspecified |
scaffold24594 |
46109 |
46373 |
- |
RS1 |
Unspecified |
scaffold24594 |
47008 |
47024 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
47282 |
47317 |
+ |
(AATCA)n |
Simple_repeat |
scaffold24594 |
47583 |
47616 |
+ |
(TTAT)n |
Simple_repeat |
scaffold24594 |
47721 |
47831 |
+ |
RS18300 |
Unspecified |
scaffold24594 |
48276 |
48348 |
+ |
(GAACT)n |
Simple_repeat |
scaffold24594 |
48471 |
48512 |
+ |
(CT)n |
Simple_repeat |
scaffold24594 |
48595 |
48622 |
+ |
(TCAA)n |
Simple_repeat |
scaffold24594 |
48617 |
48668 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
48696 |
48740 |
+ |
(AATT)n |
Simple_repeat |
scaffold24594 |
51651 |
51680 |
+ |
(TTTTA)n |
Simple_repeat |
scaffold24594 |
56486 |
56734 |
+ |
RS16888 |
Unspecified |
scaffold24594 |
56982 |
57057 |
+ |
RS185 |
Unspecified |
scaffold24594 |
58122 |
58147 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
58553 |
58594 |
+ |
(TTATTAG)n |
Simple_repeat |
scaffold24594 |
58750 |
58945 |
- |
RS356 |
Unspecified |
scaffold24594 |
60149 |
60193 |
+ |
(TATACT)n |
Simple_repeat |
scaffold24594 |
60855 |
61072 |
- |
PL582 |
Unspecified |
scaffold24594 |
61202 |
61297 |
+ |
RS3146 |
Unspecified |
scaffold24594 |
61706 |
61759 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
62206 |
62235 |
+ |
(AATAT)n |
Simple_repeat |
scaffold24594 |
62423 |
62685 |
- |
RS365 |
Unspecified |
scaffold24594 |
66520 |
66549 |
+ |
(ACCCGA)n |
Simple_repeat |
scaffold24594 |
66682 |
66784 |
+ |
RS2734 |
Unspecified |
scaffold24594 |
66833 |
66943 |
- |
RS2734 |
Unspecified |
scaffold24594 |
66916 |
67145 |
- |
PL625 |
Unspecified |
scaffold24594 |
67324 |
67399 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
67651 |
67817 |
+ |
RS459 |
Unspecified |
scaffold24594 |
68608 |
68637 |
+ |
(AAT)n |
Simple_repeat |
scaffold24594 |
68904 |
68944 |
+ |
RS47 |
Unspecified |
scaffold24594 |
68911 |
69167 |
- |
RS47 |
Unspecified |
scaffold24594 |
70839 |
70874 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
71306 |
71406 |
+ |
RS4475 |
Unspecified |
scaffold24594 |
73360 |
73404 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
73853 |
73872 |
+ |
(GGT)n |
Simple_repeat |
scaffold24594 |
75801 |
75834 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
76517 |
77073 |
- |
RS13308 |
Unspecified |
scaffold24594 |
76796 |
78069 |
+ |
RS15011 |
Unspecified |
scaffold24594 |
79382 |
79415 |
+ |
(ACC)n |
Simple_repeat |
scaffold24594 |
79416 |
79452 |
+ |
(CAA)n |
Simple_repeat |
scaffold24594 |
79508 |
79556 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
79623 |
79730 |
- |
RS9017 |
Unspecified |
scaffold24594 |
79896 |
80105 |
- |
RS1257 |
Unspecified |
scaffold24594 |
80369 |
81103 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
scaffold24594 |
80942 |
81022 |
- |
MuDR-7_SBi |
DNA/MULE-MuDR |
scaffold24594 |
81069 |
81251 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
scaffold24594 |
81244 |
81473 |
+ |
RS2128 |
Unspecified |
scaffold24594 |
81320 |
81633 |
- |
RS331 |
Unspecified |
scaffold24594 |
81780 |
81822 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
82049 |
82065 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
82184 |
82205 |
+ |
(TA)n |
Simple_repeat |
scaffold24594 |
82829 |
82860 |
+ |
(AAAT)n |
Simple_repeat |
scaffold24594 |
82927 |
82959 |
+ |
(AATTAC)n |
Simple_repeat |
scaffold24594 |
83013 |
83041 |
+ |
(ACCTAA)n |
Simple_repeat |
scaffold24594 |
84336 |
84386 |
+ |
GA-rich |
Low_complexity |
scaffold24594 |
85271 |
85386 |
- |
RS4384 |
Unspecified |
scaffold24594 |
85650 |
85707 |
+ |
(ACACCAG)n |
Simple_repeat |
scaffold24594 |
86108 |
86152 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
86196 |
86735 |
+ |
RS12370 |
Unspecified |
scaffold24594 |
86474 |
87747 |
+ |
RS15011 |
Unspecified |
scaffold24594 |
89072 |
89112 |
+ |
(ACA)n |
Simple_repeat |
scaffold24594 |
89250 |
89356 |
- |
RS9017 |
Unspecified |
scaffold24594 |
89814 |
90302 |
- |
PL501 |
Unspecified |
scaffold24594 |
90295 |
90351 |
- |
RS4635 |
Unspecified |
scaffold24594 |
90442 |
90492 |
+ |
G-rich |
Low_complexity |
scaffold24594 |
90831 |
90860 |
+ |
(AGACCC)n |
Simple_repeat |
scaffold24594 |
90987 |
91357 |
- |
PL838 |
Unspecified |
scaffold24594 |
91706 |
91751 |
+ |
(TGAG)n |
Simple_repeat |
scaffold24594 |
92959 |
93411 |
+ |
RS6151 |
Unspecified |
scaffold24594 |
93581 |
94097 |
+ |
PL838 |
Unspecified |
scaffold24594 |
94294 |
94325 |
+ |
(AATTTT)n |
Simple_repeat |
scaffold24594 |
94480 |
94587 |
+ |
RS12449 |
Unspecified |
scaffold24594 |
96184 |
96236 |
+ |
(TA)n |
Simple_repeat |
scaffold24594 |
96898 |
97049 |
+ |
RS324 |
Unspecified |
scaffold24594 |
98041 |
98087 |
+ |
RS18111 |
Unspecified |
scaffold24594 |
98050 |
98087 |
- |
RS17 |
Unspecified |
scaffold24594 |
98133 |
98324 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold24594 |
98245 |
98324 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold24594 |
98485 |
98543 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
99301 |
99420 |
+ |
PL754 |
Unspecified |
scaffold24594 |
99305 |
99398 |
+ |
RS16382 |
Unspecified |
scaffold24594 |
99591 |
99610 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
106621 |
106655 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
110983 |
111051 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold24594 |
113173 |
113210 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
116769 |
116890 |
+ |
RS586 |
Unspecified |
scaffold24594 |
117073 |
117121 |
+ |
(TAAAA)n |
Simple_repeat |
scaffold24594 |
117375 |
117421 |
+ |
(TTA)n |
Simple_repeat |
scaffold24594 |
117588 |
117638 |
+ |
(GTG)n |
Simple_repeat |
scaffold24594 |
117681 |
117740 |
+ |
(GTTTTT)n |
Simple_repeat |
scaffold24594 |
117777 |
117878 |
+ |
(TCGGG)n |
Simple_repeat |
scaffold24594 |
118198 |
118280 |
+ |
HAT-10_Mad |
DNA/hAT-Ac |
scaffold24594 |
118280 |
118383 |
- |
PL214 |
Unspecified |
scaffold24594 |
118506 |
118689 |
- |
RS79 |
Unspecified |
scaffold24594 |
118635 |
118700 |
+ |
RS18066 |
Unspecified |
scaffold24594 |
119068 |
119341 |
- |
RS1 |
Unspecified |
scaffold24594 |
119412 |
119498 |
+ |
RS12449 |
Unspecified |
scaffold24594 |
119517 |
119539 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
119772 |
119833 |
- |
PL46 |
Unspecified |
scaffold24594 |
119791 |
119833 |
+ |
PL375 |
Unspecified |
scaffold24594 |
120100 |
120525 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
scaffold24594 |
120212 |
120255 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
120399 |
120440 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
120590 |
120619 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
120624 |
120674 |
+ |
(TAA)n |
Simple_repeat |
scaffold24594 |
120675 |
121001 |
- |
RS1716 |
Unspecified |
scaffold24594 |
120938 |
121228 |
- |
RS1781 |
Unspecified |
scaffold24594 |
121248 |
121324 |
- |
RS1781 |
Unspecified |
scaffold24594 |
121708 |
121800 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
122030 |
122182 |
+ |
(GGTGGAC)n |
Simple_repeat |
scaffold24594 |
122280 |
122332 |
+ |
GA-rich |
Low_complexity |
scaffold24594 |
122438 |
122769 |
- |
RS338 |
Unspecified |
scaffold24594 |
122766 |
122971 |
- |
RS2999 |
Unspecified |
scaffold24594 |
123180 |
123243 |
- |
RS4 |
Unspecified |
scaffold24594 |
123190 |
123256 |
+ |
RS14987 |
Unspecified |
scaffold24594 |
126093 |
126141 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
130756 |
130772 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
131123 |
131150 |
+ |
(TACA)n |
Simple_repeat |
scaffold24594 |
131676 |
131715 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
131742 |
131985 |
+ |
RS4 |
Unspecified |
scaffold24594 |
134572 |
134673 |
+ |
PL603 |
Unspecified |
scaffold24594 |
134572 |
134686 |
- |
PL603 |
Unspecified |
scaffold24594 |
135153 |
135172 |
+ |
(AAC)n |
Simple_repeat |
scaffold24594 |
135939 |
135956 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
138720 |
138738 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
141431 |
141471 |
+ |
(CGGCGA)n |
Simple_repeat |
scaffold24594 |
142316 |
142342 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
144028 |
144064 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
144061 |
144205 |
+ |
RS17098 |
Unspecified |
scaffold24594 |
144331 |
144723 |
- |
RS29 |
Unspecified |
scaffold24594 |
144777 |
144882 |
+ |
RS793 |
Unspecified |
scaffold24594 |
144877 |
145499 |
+ |
RS853 |
Unspecified |
scaffold24594 |
145825 |
146064 |
+ |
RS853 |
Unspecified |
scaffold24594 |
146211 |
146239 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
146483 |
146586 |
+ |
(ATTTTA)n |
Simple_repeat |
scaffold24594 |
146787 |
146807 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
147082 |
147120 |
+ |
(TC)n |
Simple_repeat |
scaffold24594 |
151162 |
151274 |
- |
Helitron-3_ZM |
RC/Helitron |
scaffold24594 |
153455 |
153535 |
+ |
(ATATTCA)n |
Simple_repeat |
scaffold24594 |
153455 |
153837 |
+ |
(ATATTCA)n |
Simple_repeat |
scaffold24594 |
153524 |
153862 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
153650 |
153862 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
153827 |
153862 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
160513 |
160619 |
- |
Copia-37_GM-I |
LTR/Copia |
scaffold24594 |
163166 |
163185 |
+ |
(AAC)n |
Simple_repeat |
scaffold24594 |
164575 |
164684 |
+ |
RS13770 |
Unspecified |
scaffold24594 |
165172 |
165290 |
+ |
RS13566 |
Unspecified |
scaffold24594 |
166442 |
166475 |
+ |
(ATTAT)n |
Simple_repeat |
scaffold24594 |
166733 |
166958 |
+ |
LTR2-ZM_LTR |
LTR |
scaffold24594 |
167778 |
168452 |
+ |
RS1068 |
Unspecified |
scaffold24594 |
168544 |
168888 |
+ |
RS971 |
Unspecified |
scaffold24594 |
169697 |
169804 |
+ |
RS13770 |
Unspecified |
scaffold24594 |
169855 |
169964 |
+ |
RS13770 |
Unspecified |
scaffold24594 |
170044 |
170149 |
+ |
(CAGTT)n |
Simple_repeat |
scaffold24594 |
170198 |
170316 |
+ |
RS13566 |
Unspecified |
scaffold24594 |
170785 |
170832 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
171651 |
171677 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
173241 |
173282 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
174883 |
174935 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
180993 |
181036 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
183980 |
184008 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
184357 |
184377 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
184578 |
184625 |
+ |
(ATT)n |
Simple_repeat |
scaffold24594 |
184626 |
184685 |
+ |
(GTT)n |
Simple_repeat |
scaffold24594 |
184933 |
184992 |
+ |
(TTA)n |
Simple_repeat |
scaffold24594 |
184964 |
185019 |
+ |
(TTG)n |
Simple_repeat |
scaffold24594 |
185364 |
185439 |
- |
RS318 |
Unspecified |
scaffold24594 |
187507 |
187523 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
188560 |
188611 |
+ |
(TTTAT)n |
Simple_repeat |
scaffold24594 |
188896 |
188944 |
+ |
RS5714 |
Unspecified |
scaffold24594 |
189733 |
189795 |
+ |
GA-rich |
Low_complexity |
scaffold24594 |
189955 |
190038 |
+ |
(TTC)n |
Simple_repeat |
scaffold24594 |
189998 |
190063 |
+ |
(TTTG)n |
Simple_repeat |
scaffold24594 |
190394 |
190431 |
+ |
(TTCTCTT)n |
Simple_repeat |
scaffold24594 |
191757 |
191836 |
+ |
RS16363 |
Unspecified |
scaffold24594 |
191977 |
192030 |
+ |
(TAAGTAT)n |
Simple_repeat |
scaffold24594 |
192324 |
192349 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
192448 |
192474 |
+ |
(CT)n |
Simple_repeat |
scaffold24594 |
194308 |
194326 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
196807 |
196813 |
+ |
(ATTTTT)n |
Simple_repeat |
scaffold24594 |
196814 |
196853 |
+ |
(TTT)n |
Simple_repeat |
scaffold24594 |
197282 |
197341 |
+ |
(TTTTTT)n |
Simple_repeat |
scaffold24594 |
198942 |
198993 |
+ |
(GT)n |
Simple_repeat |
scaffold24594 |
201751 |
201813 |
+ |
(AATTAA)n |
Simple_repeat |
scaffold24594 |
202849 |
202885 |
+ |
(TTTTGT)n |
Simple_repeat |
scaffold24594 |
203585 |
203614 |
+ |
(ATTTT)n |
Simple_repeat |
scaffold24594 |
208060 |
208267 |
+ |
RS209 |
Unspecified |
scaffold24594 |
209539 |
209896 |
+ |
RS16564 |
Unspecified |
scaffold24594 |
210153 |
210197 |
+ |
(AAC)n |
Simple_repeat |
scaffold24594 |
210354 |
210489 |
+ |
RS17218 |
Unspecified |
scaffold24594 |
210934 |
211080 |
+ |
RS15236 |
Unspecified |
scaffold24594 |
211446 |
211548 |
+ |
(GGT)n |
Simple_repeat |
scaffold24594 |
211576 |
211662 |
+ |
(TAA)n |
Simple_repeat |
scaffold24594 |
211768 |
211824 |
+ |
A-rich |
Low_complexity |
scaffold24594 |
212064 |
212103 |
+ |
(T)n |
Simple_repeat |
scaffold24594 |
212130 |
212162 |
+ |
(TGATTT)n |
Simple_repeat |
scaffold24594 |
212683 |
212938 |
+ |
RS1 |
Unspecified |
scaffold24594 |
213111 |
213136 |
+ |
(GGTGT)n |
Simple_repeat |
scaffold24594 |
213248 |
213273 |
+ |
(A)n |
Simple_repeat |
scaffold24594 |
213447 |
213850 |
- |
RS283 |
Unspecified |
scaffold24594 |
213846 |
214035 |
- |
RS283 |
Unspecified |
scaffold24594 |
213997 |
214065 |
- |
PL767 |
Unspecified |
scaffold24594 |
214011 |
214065 |
- |
RS283 |
Unspecified |
scaffold24594 |
218005 |
218042 |
+ |
RS9317 |
Unspecified |
scaffold24594 |
218405 |
218445 |
+ |
RS15268 |
Unspecified |