scaffold25176 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold25176 |
1 |
244 |
+ |
RS794 |
Unspecified |
| scaffold25176 |
189 |
292 |
- |
RS1734 |
Unspecified |
| scaffold25176 |
329 |
392 |
+ |
(T)n |
Simple_repeat |
| scaffold25176 |
431 |
636 |
- |
RS5468 |
Unspecified |
| scaffold25176 |
1490 |
1597 |
- |
Copia-83_PT-LTR |
LTR/Copia |
| scaffold25176 |
1604 |
1629 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold25176 |
1705 |
1743 |
+ |
(A)n |
Simple_repeat |
| scaffold25176 |
2442 |
2497 |
+ |
(CCCTC)n |
Simple_repeat |
| scaffold25176 |
2792 |
3066 |
+ |
RS586 |
Unspecified |
| scaffold25176 |
3650 |
3687 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold25176 |
3688 |
3695 |
+ |
(TATTTTT)n |
Simple_repeat |
| scaffold25176 |
4081 |
4136 |
+ |
(AAG)n |
Simple_repeat |
| scaffold25176 |
4329 |
4366 |
+ |
A-rich |
Low_complexity |
| scaffold25176 |
4603 |
5000 |
- |
RS29 |
Unspecified |
| scaffold25176 |
5253 |
5343 |
+ |
(CTTTTT)n |
Simple_repeat |
| scaffold25176 |
5349 |
5611 |
- |
RS185 |
Unspecified |
| scaffold25176 |
6197 |
6225 |
+ |
(CAATT)n |
Simple_repeat |
| scaffold25176 |
7420 |
7481 |
- |
STOWAWAY2_SB |
DNA/TcMar-Stowaway |
| scaffold25176 |
8110 |
8236 |
+ |
(CCCAG)n |
Simple_repeat |
| scaffold25176 |
8110 |
8147 |
+ |
(CCCAG)n |
Simple_repeat |
| scaffold25176 |
8141 |
8236 |
+ |
RS2020 |
Unspecified |
| scaffold25176 |
8279 |
8403 |
- |
RS223 |
Unspecified |
| scaffold25176 |
8427 |
8462 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold25176 |
8859 |
8972 |
- |
RS3146 |
Unspecified |
| scaffold25176 |
8959 |
8997 |
- |
RS3146 |
Unspecified |
| scaffold25176 |
9683 |
9719 |
+ |
(TA)n |
Simple_repeat |
| scaffold25176 |
10160 |
10217 |
+ |
(TA)n |
Simple_repeat |
| scaffold25176 |
10357 |
10547 |
+ |
RS5725 |
Unspecified |
| scaffold25176 |
13221 |
13258 |
+ |
(TTGTA)n |
Simple_repeat |
| scaffold25176 |
14504 |
14530 |
+ |
(TA)n |
Simple_repeat |
| scaffold25176 |
14545 |
14574 |
+ |
(AAACA)n |
Simple_repeat |
| scaffold25176 |
16133 |
16308 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold25176 |
16644 |
16668 |
+ |
(T)n |
Simple_repeat |
| scaffold25176 |
16669 |
16678 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold25176 |
17939 |
17981 |
+ |
(ATAC)n |
Simple_repeat |
| scaffold25176 |
18224 |
18271 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold25176 |
20020 |
20043 |
+ |
(TA)n |
Simple_repeat |
| scaffold25176 |
23053 |
23085 |
+ |
A-rich |
Low_complexity |
| scaffold25176 |
25236 |
25315 |
+ |
(GATGG)n |
Simple_repeat |
| scaffold25176 |
25617 |
25685 |
+ |
A-rich |
Low_complexity |
| scaffold25176 |
28309 |
28330 |
+ |
(AATA)n |
Simple_repeat |
| scaffold25176 |
28506 |
28567 |
+ |
(ATG)n |
Simple_repeat |
| scaffold25176 |
28609 |
28641 |
+ |
(ATATG)n |
Simple_repeat |
| scaffold25176 |
28866 |
28915 |
+ |
(AAGTA)n |
Simple_repeat |
| scaffold25176 |
28916 |
28933 |
+ |
GA-rich |
Low_complexity |
| scaffold25176 |
29328 |
29351 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold25176 |
29868 |
29935 |
+ |
(TTTATTC)n |
Simple_repeat |
| scaffold25176 |
32995 |
33117 |
+ |
RS11100 |
Unspecified |
| scaffold25176 |
33218 |
33323 |
+ |
RS1259 |
Unspecified |
| scaffold25176 |
33436 |
33545 |
- |
RS509 |
Unspecified |
| scaffold25176 |
33962 |
33998 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold25176 |
34361 |
34525 |
- |
RS109 |
Unspecified |
| scaffold25176 |
34768 |
34861 |
+ |
RS3380 |
Unspecified |
| scaffold25176 |
34950 |
35215 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold25176 |
35462 |
35497 |
+ |
(TTGCG)n |
Simple_repeat |
| scaffold25176 |
35683 |
35717 |
+ |
(ATTCA)n |
Simple_repeat |
| scaffold25176 |
35797 |
35872 |
+ |
PL436 |
Unspecified |
| scaffold25176 |
35872 |
35938 |
+ |
RS16382 |
Unspecified |
| scaffold25176 |
35880 |
35945 |
- |
RS17119 |
Unspecified |
| scaffold25176 |
36127 |
36159 |
+ |
(TTTTC)n |
Simple_repeat |
| scaffold25176 |
36559 |
36590 |
+ |
(ATACATG)n |
Simple_repeat |
| scaffold25176 |
37287 |
37333 |
+ |
(ATA)n |
Simple_repeat |
| scaffold25176 |
37729 |
37751 |
+ |
(A)n |
Simple_repeat |
| scaffold25176 |
38391 |
38440 |
+ |
(TC)n |
Simple_repeat |
| scaffold25176 |
38659 |
38735 |
+ |
RS4475 |
Unspecified |
| scaffold25176 |
38748 |
38775 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold25176 |
39001 |
39036 |
+ |
A-rich |
Low_complexity |
| scaffold25176 |
39500 |
39547 |
+ |
(TAG)n |
Simple_repeat |
| scaffold25176 |
39812 |
39854 |
+ |
A-rich |
Low_complexity |
| scaffold25176 |
40690 |
40728 |
+ |
(CTT)n |
Simple_repeat |
| scaffold25176 |
42544 |
42634 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold25176 |
42893 |
42903 |
- |
LT1_EPa |
LTR? |
| scaffold25176 |
42904 |
42993 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold25176 |
43031 |
43129 |
+ |
RS981 |
Unspecified |
| scaffold25176 |
43131 |
43178 |
+ |
(TCTTCA)n |
Simple_repeat |
| scaffold25176 |
43790 |
44032 |
- |
PL508 |
Unspecified |
| scaffold25176 |
44032 |
44221 |
+ |
DS-RICE3N |
DNA/hAT-Ac |
| scaffold25176 |
44055 |
44228 |
- |
ZhATN1_ZM |
DNA/hAT-Ac |
| scaffold25176 |
44365 |
44528 |
- |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold25176 |
44538 |
44660 |
+ |
PL542 |
Unspecified |
| scaffold25176 |
44679 |
44702 |
+ |
(GAT)n |
Simple_repeat |
| scaffold25176 |
44715 |
44750 |
+ |
(CAATCAC)n |
Simple_repeat |
| scaffold25176 |
44818 |
44839 |
+ |
(TCAC)n |
Simple_repeat |
| scaffold25176 |
45010 |
45035 |
+ |
(CTG)n |
Simple_repeat |
| scaffold25176 |
45078 |
45105 |
+ |
(TCTTT)n |
Simple_repeat |
| scaffold25176 |
46510 |
46564 |
+ |
(TTGCTAA)n |
Simple_repeat |
| scaffold25176 |
47802 |
47820 |
+ |
(AGT)n |
Simple_repeat |
| scaffold25176 |
48013 |
48195 |
- |
RS18 |
Unspecified |
| scaffold25176 |
48217 |
48301 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold25176 |
48726 |
49046 |
- |
RS748 |
Unspecified |
| scaffold25176 |
49260 |
49289 |
+ |
(GGCTG)n |
Simple_repeat |
| scaffold25176 |
49608 |
49634 |
+ |
(AAGT)n |
Simple_repeat |
| scaffold25176 |
49911 |
49959 |
+ |
(CTT)n |
Simple_repeat |
| scaffold25176 |
50178 |
50210 |
+ |
(TCAC)n |
Simple_repeat |
| scaffold25176 |
50217 |
50243 |
+ |
(CTTAT)n |
Simple_repeat |
| scaffold25176 |
50895 |
50928 |
- |
RS16108 |
Unspecified |
| scaffold25176 |
51966 |
52081 |
+ |
(TCTTTGA)n |
Simple_repeat |
| scaffold25176 |
53385 |
53431 |
+ |
A-rich |
Low_complexity |
| scaffold25176 |
54851 |
54919 |
+ |
PL9 |
Unspecified |
| scaffold25176 |
54915 |
54970 |
+ |
PL380 |
Unspecified |
| scaffold25176 |
54921 |
54970 |
- |
PL744 |
Unspecified |
| scaffold25176 |
56474 |
56560 |
- |
RS18078 |
Unspecified |
| scaffold25176 |
56599 |
56766 |
- |
RS43 |
Unspecified |
| scaffold25176 |
56828 |
56851 |
+ |
(A)n |
Simple_repeat |
| scaffold25176 |
57212 |
57405 |
+ |
RS3756 |
Unspecified |
| scaffold25176 |
57427 |
57514 |
+ |
(TCTTT)n |
Simple_repeat |
| scaffold25176 |
57783 |
57808 |
+ |
(AATA)n |
Simple_repeat |
| scaffold25176 |
57891 |
58096 |
+ |
RS18 |
Unspecified |
| scaffold25176 |
58194 |
58216 |
+ |
(AAAG)n |
Simple_repeat |
| scaffold25176 |
58545 |
58575 |
+ |
(CTCC)n |
Simple_repeat |
| scaffold25176 |
58587 |
58611 |
+ |
(TTCAT)n |
Simple_repeat |
| scaffold25176 |
58694 |
58711 |
+ |
(GTT)n |
Simple_repeat |
| scaffold25176 |
60524 |
60552 |
+ |
(T)n |
Simple_repeat |
| scaffold25176 |
62753 |
62773 |
+ |
(T)n |
Simple_repeat |
| scaffold25176 |
64815 |
64838 |
+ |
(TA)n |
Simple_repeat |
| scaffold25176 |
65359 |
65409 |
+ |
A-rich |
Low_complexity |
| scaffold25176 |
66463 |
66489 |
+ |
(TTCC)n |
Simple_repeat |
| scaffold25176 |
70643 |
70665 |
+ |
(ATT)n |
Simple_repeat |
| scaffold25176 |
71411 |
71498 |
- |
RS17860 |
Unspecified |
| scaffold25176 |
71547 |
73792 |
+ |
Copia-8_Pru-I |
LTR/Copia |
| scaffold25176 |
74030 |
75951 |
+ |
Copia-8_Pru-I |
LTR/Copia |
| scaffold25176 |
76201 |
76243 |
+ |
A-rich |
Low_complexity |
| scaffold25176 |
76879 |
76968 |
+ |
(GGT)n |
Simple_repeat |
| scaffold25176 |
77297 |
77352 |
- |
RS757 |
Unspecified |
| scaffold25176 |
77944 |
78024 |
- |
RS8095 |
Unspecified |
| scaffold25176 |
78337 |
78569 |
- |
RS18 |
Unspecified |
| scaffold25176 |
79171 |
79231 |
+ |
RS3066 |
Unspecified |
| scaffold25176 |
79467 |
79826 |
+ |
RS16489 |
Unspecified |
| scaffold25176 |
79990 |
80117 |
+ |
RS16584 |
Unspecified |
| scaffold25176 |
80795 |
80829 |
+ |
(T)n |
Simple_repeat |
| scaffold25176 |
81125 |
81141 |
+ |
(TA)n |
Simple_repeat |
| scaffold25176 |
81834 |
81897 |
+ |
(TATT)n |
Simple_repeat |
| scaffold25176 |
82478 |
82498 |
+ |
(AT)n |
Simple_repeat |
| scaffold25176 |
84483 |
84581 |
+ |
RS1 |
Unspecified |
| scaffold25176 |
84694 |
84871 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold25176 |
84888 |
84919 |
+ |
(GTGA)n |
Simple_repeat |
| scaffold25176 |
84949 |
84974 |
+ |
(AAG)n |
Simple_repeat |
| scaffold25176 |
85119 |
85149 |
+ |
(CCCACA)n |
Simple_repeat |
| scaffold25176 |
85196 |
85245 |
+ |
(T)n |
Simple_repeat |
| scaffold25176 |
89077 |
89105 |
+ |
(T)n |
Simple_repeat |
| scaffold25176 |
89281 |
89342 |
+ |
(TGGTTAG)n |
Simple_repeat |
| scaffold25176 |
90137 |
90355 |
+ |
RS18324 |
Unspecified |
| scaffold25176 |
90698 |
90965 |
+ |
RS18201 |
Unspecified |
| scaffold25176 |
91028 |
91052 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold25176 |
91054 |
91272 |
+ |
RS18324 |
Unspecified |
| scaffold25176 |
91566 |
91833 |
+ |
RS18201 |
Unspecified |
| scaffold25176 |
91903 |
91927 |
+ |
(TATT)n |
Simple_repeat |
| scaffold25176 |
92597 |
92637 |
+ |
A-rich |
Low_complexity |
| scaffold25176 |
92818 |
93014 |
- |
RS18 |
Unspecified |
| scaffold25176 |
93549 |
93720 |
+ |
G-rich |
Low_complexity |
| scaffold25176 |
94664 |
94753 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold25176 |
95114 |
95152 |
+ |
G-rich |
Low_complexity |
| scaffold25176 |
95287 |
95317 |
+ |
(TCCCC)n |
Simple_repeat |
| scaffold25176 |
95817 |
95850 |
+ |
(GATA)n |
Simple_repeat |
| scaffold25176 |
96621 |
96682 |
+ |
(ATA)n |
Simple_repeat |
| scaffold25176 |
96922 |
97006 |
+ |
PL488 |
Unspecified |
| scaffold25176 |
97306 |
97344 |
+ |
G-rich |
Low_complexity |
| scaffold25176 |
97479 |
97509 |
+ |
(TCCCC)n |
Simple_repeat |
| scaffold25176 |
98009 |
98038 |
+ |
(GATA)n |
Simple_repeat |
| scaffold25176 |
98815 |
98876 |
+ |
(ATA)n |
Simple_repeat |
| scaffold25176 |
99908 |
100040 |
- |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold25176 |
101291 |
101326 |
+ |
(T)n |
Simple_repeat |
| scaffold25176 |
105304 |
105345 |
+ |
(TACTCCG)n |
Simple_repeat |
| scaffold25176 |
105349 |
105385 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold25176 |
105611 |
105757 |
- |
RS407 |
Unspecified |
| scaffold25176 |
106064 |
106101 |
+ |
(CAT)n |
Simple_repeat |
| scaffold25176 |
106388 |
106500 |
+ |
RS16928 |
Unspecified |
| scaffold25176 |
106509 |
106616 |
+ |
RS16878 |
Unspecified |
| scaffold25176 |
106798 |
107267 |
+ |
RS17485 |
Unspecified |
| scaffold25176 |
107454 |
107593 |
+ |
RS17118 |
Unspecified |
| scaffold25176 |
108106 |
108420 |
+ |
RS18250 |
Unspecified |
| scaffold25176 |
108544 |
108759 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold25176 |
109763 |
109925 |
- |
RS1111 |
Unspecified |
| scaffold25176 |
111371 |
111524 |
- |
RS452 |
Unspecified |
| scaffold25176 |
111525 |
111564 |
+ |
(ATGAGT)n |
Simple_repeat |
| scaffold25176 |
112145 |
112184 |
+ |
(TGATA)n |
Simple_repeat |
| scaffold25176 |
114172 |
114262 |
+ |
RS8095 |
Unspecified |
| scaffold25176 |
114775 |
114890 |
+ |
RS1187 |
Unspecified |
| scaffold25176 |
115501 |
115680 |
+ |
RS5 |
Unspecified |
| scaffold25176 |
116724 |
117099 |
+ |
RS322 |
Unspecified |
| scaffold25176 |
117119 |
117191 |
+ |
A-rich |
Low_complexity |
| scaffold25176 |
117161 |
117192 |
+ |
(A)n |
Simple_repeat |
| scaffold25176 |
118050 |
118342 |
+ |
RS873 |
Unspecified |
| scaffold25176 |
118058 |
118388 |
+ |
RS29 |
Unspecified |
| scaffold25176 |
118575 |
118605 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold25176 |
118955 |
118975 |
+ |
(T)n |
Simple_repeat |
| scaffold25176 |
119102 |
119145 |
+ |
(AAT)n |
Simple_repeat |
| scaffold25176 |
119154 |
119250 |
- |
RS16382 |
Unspecified |
| scaffold25176 |
119732 |
119780 |
+ |
(T)n |
Simple_repeat |
| scaffold25176 |
119874 |
119929 |
+ |
(TTTATTA)n |
Simple_repeat |
| scaffold25176 |
120400 |
120449 |
+ |
(CAT)n |
Simple_repeat |
| scaffold25176 |
120725 |
120807 |
+ |
A-rich |
Low_complexity |
| scaffold25176 |
121184 |
121421 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold25176 |
124358 |
124443 |
- |
HADES_TA |
DNA/TcMar-Stowaway |
| scaffold25176 |
125130 |
125309 |
+ |
RS509 |
Unspecified |
| scaffold25176 |
128955 |
128979 |
+ |
(AAAAG)n |
Simple_repeat |
| scaffold25176 |
130037 |
130094 |
+ |
(AGTGATG)n |
Simple_repeat |
| scaffold25176 |
130372 |
130410 |
+ |
(CTCTTC)n |
Simple_repeat |
| scaffold25176 |
130465 |
130507 |
+ |
A-rich |
Low_complexity |
| scaffold25176 |
130570 |
130650 |
+ |
GA-rich |
Low_complexity |
| scaffold25176 |
131831 |
132110 |
- |
RS2542 |
Unspecified |
| scaffold25176 |
132042 |
132160 |
+ |
RS2542 |
Unspecified |
| scaffold25176 |
132158 |
132300 |
+ |
RS8888 |
Unspecified |