scaffold25850 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold25850 |
1 |
553 |
+ |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold25850 |
641 |
767 |
+ |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold25850 |
739 |
784 |
+ |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold25850 |
761 |
840 |
+ |
(GAT)n |
Simple_repeat |
| scaffold25850 |
1430 |
2390 |
+ |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold25850 |
2504 |
2552 |
+ |
RS786 |
Unspecified |
| scaffold25850 |
2761 |
3163 |
+ |
PL844 |
Unspecified |
| scaffold25850 |
3200 |
3227 |
+ |
(TTC)n |
Simple_repeat |
| scaffold25850 |
5236 |
5655 |
- |
PL903 |
Unspecified |
| scaffold25850 |
6072 |
6105 |
+ |
(GTTCT)n |
Simple_repeat |
| scaffold25850 |
6372 |
6671 |
+ |
RS266 |
Unspecified |
| scaffold25850 |
7488 |
7552 |
+ |
A-rich |
Low_complexity |
| scaffold25850 |
8144 |
8180 |
+ |
A-rich |
Low_complexity |
| scaffold25850 |
8810 |
8882 |
- |
TTO1_NT_I-int |
LTR/Copia |
| scaffold25850 |
8822 |
8977 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold25850 |
9132 |
9184 |
- |
Copia-62_ST-I |
LTR/Copia |
| scaffold25850 |
9408 |
9983 |
- |
RS289 |
Unspecified |
| scaffold25850 |
9999 |
10055 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold25850 |
12023 |
12770 |
+ |
RS363 |
Unspecified |
| scaffold25850 |
12290 |
12849 |
+ |
RS2292 |
Unspecified |
| scaffold25850 |
13136 |
13192 |
+ |
DEL_LH_I-int |
LTR/Gypsy |
| scaffold25850 |
13414 |
13457 |
+ |
(ATT)n |
Simple_repeat |
| scaffold25850 |
14248 |
14292 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold25850 |
14410 |
14453 |
+ |
(TATA)n |
Simple_repeat |
| scaffold25850 |
14410 |
14694 |
+ |
(TATA)n |
Simple_repeat |
| scaffold25850 |
14442 |
14694 |
+ |
RS363 |
Unspecified |
| scaffold25850 |
15030 |
15145 |
- |
Copia-4_SL-LTR |
LTR/Copia |
| scaffold25850 |
15346 |
15966 |
- |
RS57 |
Unspecified |
| scaffold25850 |
15581 |
16208 |
+ |
PL889 |
Unspecified |
| scaffold25850 |
15722 |
16268 |
- |
RS215 |
Unspecified |
| scaffold25850 |
16125 |
16285 |
+ |
RS1172 |
Unspecified |
| scaffold25850 |
16318 |
16350 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold25850 |
16964 |
17028 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold25850 |
17140 |
17182 |
+ |
(A)n |
Simple_repeat |
| scaffold25850 |
18948 |
18977 |
+ |
(ATA)n |
Simple_repeat |
| scaffold25850 |
19381 |
19431 |
+ |
(A)n |
Simple_repeat |
| scaffold25850 |
19747 |
19764 |
+ |
(T)n |
Simple_repeat |
| scaffold25850 |
21060 |
21107 |
+ |
(AATTATT)n |
Simple_repeat |
| scaffold25850 |
21950 |
21968 |
+ |
(A)n |
Simple_repeat |
| scaffold25850 |
21972 |
22359 |
+ |
RS29 |
Unspecified |
| scaffold25850 |
22745 |
22797 |
+ |
GA-rich |
Low_complexity |
| scaffold25850 |
23303 |
23334 |
+ |
A-rich |
Low_complexity |
| scaffold25850 |
24589 |
24673 |
+ |
Copia-82_GM-I |
LTR/Copia |
| scaffold25850 |
25039 |
25069 |
+ |
(ATTG)n |
Simple_repeat |
| scaffold25850 |
25073 |
25102 |
+ |
(TAA)n |
Simple_repeat |
| scaffold25850 |
25226 |
25249 |
+ |
(A)n |
Simple_repeat |
| scaffold25850 |
25293 |
25328 |
+ |
(CGTGT)n |
Simple_repeat |
| scaffold25850 |
26513 |
26620 |
- |
RS972 |
Unspecified |
| scaffold25850 |
27096 |
27122 |
+ |
(TGG)n |
Simple_repeat |
| scaffold25850 |
27257 |
27417 |
+ |
RS4 |
Unspecified |
| scaffold25850 |
27432 |
27650 |
- |
RS614 |
Unspecified |
| scaffold25850 |
27630 |
27720 |
- |
RS223 |
Unspecified |
| scaffold25850 |
28241 |
28303 |
+ |
(TAA)n |
Simple_repeat |
| scaffold25850 |
28880 |
29702 |
- |
HAT-13_Mad |
DNA/hAT-Ac |
| scaffold25850 |
29778 |
30070 |
- |
hAT-20_ZM |
DNA/hAT-Ac |
| scaffold25850 |
30202 |
30414 |
- |
hAT |
hAT(TransposonPSI) |
| scaffold25850 |
30778 |
30889 |
+ |
RS13514 |
Unspecified |
| scaffold25850 |
31570 |
32274 |
+ |
Copia-12_ST-I |
LTR/Copia |
| scaffold25850 |
32369 |
32727 |
- |
PL265 |
Unspecified |
| scaffold25850 |
33572 |
33597 |
+ |
(TACA)n |
Simple_repeat |
| scaffold25850 |
33600 |
34543 |
- |
RS934 |
Unspecified |
| scaffold25850 |
34558 |
35995 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold25850 |
35969 |
35995 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold25850 |
36234 |
36759 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold25850 |
37160 |
37191 |
+ |
(ACA)n |
Simple_repeat |
| scaffold25850 |
37566 |
37755 |
- |
RS3075 |
Unspecified |
| scaffold25850 |
38999 |
39861 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold25850 |
39835 |
39861 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold25850 |
40172 |
40231 |
+ |
(CGCTTT)n |
Simple_repeat |
| scaffold25850 |
40968 |
41018 |
+ |
A-rich |
Low_complexity |
| scaffold25850 |
42837 |
42960 |
- |
PL248 |
Unspecified |
| scaffold25850 |
43253 |
43903 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold25850 |
44078 |
44113 |
+ |
(TGA)n |
Simple_repeat |
| scaffold25850 |
44310 |
44457 |
+ |
Athila0_I-int |
LTR/Gypsy |
| scaffold25850 |
45135 |
45187 |
+ |
A-rich |
Low_complexity |
| scaffold25850 |
45799 |
45868 |
+ |
OPHELIA3_HV |
LTR/Gypsy |
| scaffold25850 |
47259 |
47694 |
+ |
RS1496 |
Unspecified |
| scaffold25850 |
47583 |
47738 |
+ |
RS105 |
Unspecified |
| scaffold25850 |
48528 |
48565 |
+ |
(CTCGA)n |
Simple_repeat |
| scaffold25850 |
48975 |
49329 |
+ |
RS2947 |
Unspecified |
| scaffold25850 |
50656 |
50788 |
+ |
A-rich |
Low_complexity |
| scaffold25850 |
50860 |
50898 |
+ |
(AACAAGC)n |
Simple_repeat |
| scaffold25850 |
51275 |
51597 |
- |
RS78 |
Unspecified |
| scaffold25850 |
51598 |
52378 |
+ |
PL333 |
Unspecified |
| scaffold25850 |
53711 |
54180 |
- |
RS247 |
Unspecified |
| scaffold25850 |
53792 |
54240 |
- |
RS247 |
Unspecified |
| scaffold25850 |
53855 |
54297 |
- |
RS247 |
Unspecified |
| scaffold25850 |
53925 |
54386 |
- |
RS247 |
Unspecified |
| scaffold25850 |
53985 |
54450 |
- |
RS247 |
Unspecified |
| scaffold25850 |
54075 |
54541 |
- |
RS247 |
Unspecified |
| scaffold25850 |
54245 |
54690 |
- |
RS247 |
Unspecified |
| scaffold25850 |
55056 |
56050 |
+ |
RS709 |
Unspecified |
| scaffold25850 |
55416 |
56541 |
- |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold25850 |
56459 |
56541 |
- |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold25850 |
57546 |
57654 |
- |
Ogre-VP1_I-int |
LTR/Gypsy |
| scaffold25850 |
58376 |
58477 |
- |
Ogre-PT1_I-int |
LTR/Gypsy |
| scaffold25850 |
59175 |
59204 |
+ |
(TGTTT)n |
Simple_repeat |
| scaffold25850 |
59397 |
59453 |
- |
Gypsy-21_ST-I |
LTR/Gypsy |
| scaffold25850 |
61398 |
61487 |
+ |
PL333 |
Unspecified |