scaffold2629 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold2629 |
1 |
277 |
- |
PL741 |
Unspecified |
scaffold2629 |
71 |
746 |
- |
PL867 |
Unspecified |
scaffold2629 |
1618 |
1778 |
- |
RS6462 |
Unspecified |
scaffold2629 |
2090 |
2509 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
scaffold2629 |
2810 |
3394 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
scaffold2629 |
3537 |
3612 |
+ |
(TTTAA)n |
Simple_repeat |
scaffold2629 |
4191 |
4217 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
4425 |
4688 |
- |
RS356 |
Unspecified |
scaffold2629 |
5049 |
5084 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
5466 |
5715 |
- |
Harbinger1_PTr |
DNA/PIF-Harbinger |
scaffold2629 |
6696 |
6737 |
+ |
(AATTGAT)n |
Simple_repeat |
scaffold2629 |
7011 |
7052 |
+ |
(TCTTCG)n |
Simple_repeat |
scaffold2629 |
7392 |
7413 |
+ |
(TTAA)n |
Simple_repeat |
scaffold2629 |
7731 |
8564 |
- |
RS355 |
Unspecified |
scaffold2629 |
8557 |
8959 |
- |
PL699 |
Unspecified |
scaffold2629 |
9894 |
10901 |
- |
LINE |
LINE(TransposonPSI) |
scaffold2629 |
10114 |
10862 |
- |
L1-1_PTr |
LINE/L1 |
scaffold2629 |
12664 |
12691 |
+ |
(TTTTA)n |
Simple_repeat |
scaffold2629 |
13248 |
13352 |
+ |
(TTAAT)n |
Simple_repeat |
scaffold2629 |
14222 |
14244 |
+ |
(A)n |
Simple_repeat |
scaffold2629 |
14749 |
14770 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
15304 |
15364 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
15543 |
15595 |
+ |
(TTTTATT)n |
Simple_repeat |
scaffold2629 |
16231 |
16263 |
+ |
(ATTT)n |
Simple_repeat |
scaffold2629 |
18348 |
18514 |
- |
RS1035 |
Unspecified |
scaffold2629 |
18674 |
18704 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
19338 |
19731 |
+ |
RS29 |
Unspecified |
scaffold2629 |
20219 |
20363 |
+ |
RS115 |
Unspecified |
scaffold2629 |
20373 |
20683 |
- |
RS2926 |
Unspecified |
scaffold2629 |
20725 |
20920 |
+ |
RS458 |
Unspecified |
scaffold2629 |
23278 |
23347 |
+ |
(TTA)n |
Simple_repeat |
scaffold2629 |
23729 |
23786 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
24613 |
24876 |
- |
RS10 |
Unspecified |
scaffold2629 |
25107 |
25141 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
25142 |
25172 |
+ |
(ATTTTTA)n |
Simple_repeat |
scaffold2629 |
25492 |
25570 |
+ |
(AATTC)n |
Simple_repeat |
scaffold2629 |
25731 |
25980 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
25959 |
25980 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
25998 |
26025 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
26060 |
26135 |
+ |
(CCA)n |
Simple_repeat |
scaffold2629 |
26492 |
26519 |
+ |
(ATAAT)n |
Simple_repeat |
scaffold2629 |
26589 |
26624 |
+ |
(A)n |
Simple_repeat |
scaffold2629 |
26734 |
27364 |
- |
PL408 |
Unspecified |
scaffold2629 |
27570 |
27617 |
+ |
(TGTT)n |
Simple_repeat |
scaffold2629 |
27649 |
28348 |
+ |
RS10286 |
Unspecified |
scaffold2629 |
30410 |
30438 |
+ |
GA-rich |
Low_complexity |
scaffold2629 |
30584 |
30622 |
+ |
GA-rich |
Low_complexity |
scaffold2629 |
31056 |
31539 |
- |
PL6 |
Unspecified |
scaffold2629 |
31916 |
32180 |
+ |
RS106 |
Unspecified |
scaffold2629 |
33499 |
33652 |
+ |
RS992 |
Unspecified |
scaffold2629 |
33521 |
33758 |
- |
RS5602 |
Unspecified |
scaffold2629 |
33642 |
34255 |
- |
RS992 |
Unspecified |
scaffold2629 |
34467 |
34846 |
+ |
RS5937 |
Unspecified |
scaffold2629 |
35166 |
35209 |
+ |
(ATTT)n |
Simple_repeat |
scaffold2629 |
35265 |
35688 |
+ |
RIRE1_I-int |
LTR/Copia |
scaffold2629 |
35678 |
36012 |
+ |
RS552 |
Unspecified |
scaffold2629 |
39101 |
39645 |
- |
RS156 |
Unspecified |
scaffold2629 |
39647 |
40623 |
+ |
RIRE1_I-int |
LTR/Copia |
scaffold2629 |
41244 |
41262 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
41426 |
41433 |
+ |
(ATTTTAT)n |
Simple_repeat |
scaffold2629 |
41434 |
41451 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
41452 |
41514 |
+ |
(ATTTTAT)n |
Simple_repeat |
scaffold2629 |
41907 |
41947 |
+ |
(TTTCTTC)n |
Simple_repeat |
scaffold2629 |
42042 |
42077 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
43187 |
43218 |
+ |
(AT)n |
Simple_repeat |
scaffold2629 |
43286 |
43316 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
43547 |
43565 |
+ |
(A)n |
Simple_repeat |
scaffold2629 |
43708 |
43738 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
45042 |
45316 |
+ |
RS17600 |
Unspecified |
scaffold2629 |
45334 |
45621 |
+ |
RS14 |
Unspecified |
scaffold2629 |
45622 |
45815 |
- |
RS11189 |
Unspecified |
scaffold2629 |
47081 |
47656 |
- |
PL862 |
Unspecified |
scaffold2629 |
47734 |
47752 |
+ |
(A)n |
Simple_repeat |
scaffold2629 |
48058 |
48096 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
48913 |
49329 |
+ |
RS6933 |
Unspecified |
scaffold2629 |
49359 |
49402 |
+ |
(AATCAT)n |
Simple_repeat |
scaffold2629 |
49830 |
49980 |
- |
RS7821 |
Unspecified |
scaffold2629 |
50151 |
50176 |
+ |
(AT)n |
Simple_repeat |
scaffold2629 |
50446 |
50480 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
50628 |
51063 |
+ |
RS6195 |
Unspecified |
scaffold2629 |
51122 |
51209 |
+ |
(TTATGTA)n |
Simple_repeat |
scaffold2629 |
51122 |
52077 |
+ |
(TTATGTA)n |
Simple_repeat |
scaffold2629 |
51190 |
52077 |
+ |
RS427 |
Unspecified |
scaffold2629 |
51336 |
52077 |
- |
PL44 |
Unspecified |
scaffold2629 |
52334 |
52515 |
+ |
RS79 |
Unspecified |
scaffold2629 |
52677 |
52815 |
+ |
(ATTT)n |
Simple_repeat |
scaffold2629 |
53246 |
53522 |
+ |
RS221 |
Unspecified |
scaffold2629 |
54674 |
54878 |
+ |
RS4 |
Unspecified |
scaffold2629 |
56602 |
56650 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
57128 |
57158 |
+ |
(CAACCA)n |
Simple_repeat |
scaffold2629 |
57280 |
57360 |
+ |
(ACT)n |
Simple_repeat |
scaffold2629 |
58725 |
58751 |
+ |
(TTAA)n |
Simple_repeat |
scaffold2629 |
59365 |
59397 |
+ |
(ATTTT)n |
Simple_repeat |
scaffold2629 |
60047 |
60274 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold2629 |
60268 |
60317 |
- |
Athila6B_I-int |
LTR/Gypsy |
scaffold2629 |
60778 |
61030 |
+ |
(CTGAA)n |
Simple_repeat |
scaffold2629 |
61454 |
61478 |
+ |
(A)n |
Simple_repeat |
scaffold2629 |
61615 |
61734 |
+ |
RS2634 |
Unspecified |
scaffold2629 |
61737 |
62012 |
- |
RS2369 |
Unspecified |
scaffold2629 |
61780 |
62085 |
- |
RS1223 |
Unspecified |
scaffold2629 |
62462 |
62866 |
- |
Copia-65_Mad-I |
LTR/Copia |
scaffold2629 |
63181 |
64737 |
- |
Copia-65_Mad-I |
LTR/Copia |
scaffold2629 |
63181 |
64864 |
- |
Copia-65_Mad-I |
LTR/Copia |
scaffold2629 |
64678 |
64864 |
- |
RS8747 |
Unspecified |
scaffold2629 |
65072 |
65996 |
- |
Copia-65_Mad-I |
LTR/Copia |
scaffold2629 |
66178 |
66527 |
- |
Copia-65_Mad-I |
LTR/Copia |
scaffold2629 |
66852 |
67367 |
- |
Copia-65_Mad-I |
LTR/Copia |
scaffold2629 |
66852 |
67453 |
- |
Copia-65_Mad-I |
LTR/Copia |
scaffold2629 |
67295 |
67453 |
+ |
RS6745 |
Unspecified |
scaffold2629 |
67519 |
67933 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
67519 |
67566 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
67557 |
67933 |
+ |
RS12643 |
Unspecified |
scaffold2629 |
68567 |
68842 |
- |
RS2369 |
Unspecified |
scaffold2629 |
68610 |
68911 |
- |
RS1223 |
Unspecified |
scaffold2629 |
68913 |
69033 |
+ |
RS13542 |
Unspecified |
scaffold2629 |
69518 |
69554 |
+ |
(CAACATA)n |
Simple_repeat |
scaffold2629 |
69657 |
69684 |
+ |
(TCAA)n |
Simple_repeat |
scaffold2629 |
69805 |
70174 |
- |
LTR2-ZM_LTR |
LTR |
scaffold2629 |
69915 |
70174 |
- |
LTR2-ZM_LTR |
LTR |
scaffold2629 |
70414 |
70672 |
- |
LTR2-ZM_LTR |
LTR |
scaffold2629 |
70757 |
71527 |
+ |
RS1894 |
Unspecified |
scaffold2629 |
71556 |
71643 |
+ |
(TAA)n |
Simple_repeat |
scaffold2629 |
72369 |
72632 |
+ |
RS356 |
Unspecified |
scaffold2629 |
73253 |
73291 |
+ |
(TTTTAA)n |
Simple_repeat |
scaffold2629 |
73292 |
73303 |
+ |
(TAATTTT)n |
Simple_repeat |
scaffold2629 |
73671 |
73781 |
+ |
RS13542 |
Unspecified |
scaffold2629 |
73798 |
73856 |
+ |
(ATATTG)n |
Simple_repeat |
scaffold2629 |
74260 |
74480 |
+ |
RS442 |
Unspecified |
scaffold2629 |
74508 |
74538 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
75013 |
75087 |
- |
RS5996 |
Unspecified |
scaffold2629 |
75122 |
75196 |
+ |
(TTTGAACCGT)n |
Simple_repeat |
scaffold2629 |
75216 |
75279 |
+ |
(CCGCAC)n |
Simple_repeat |
scaffold2629 |
76265 |
76331 |
+ |
RS18111 |
Unspecified |
scaffold2629 |
78837 |
78915 |
+ |
(CTA)n |
Simple_repeat |
scaffold2629 |
79208 |
79250 |
+ |
(TGA)n |
Simple_repeat |
scaffold2629 |
79709 |
80270 |
- |
PL8 |
Unspecified |
scaffold2629 |
80162 |
80283 |
+ |
PL358 |
Unspecified |
scaffold2629 |
84560 |
84593 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
84913 |
84943 |
+ |
(GAA)n |
Simple_repeat |
scaffold2629 |
85162 |
85272 |
- |
RS1417 |
Unspecified |
scaffold2629 |
85270 |
85537 |
+ |
RS106 |
Unspecified |
scaffold2629 |
85533 |
85639 |
- |
RS1417 |
Unspecified |
scaffold2629 |
86449 |
86721 |
+ |
Copia-53_VV-I |
LTR/Copia |
scaffold2629 |
87082 |
87484 |
+ |
Copia-53_VV-I |
LTR/Copia |
scaffold2629 |
87485 |
87515 |
+ |
(TGTTTC)n |
Simple_repeat |
scaffold2629 |
87516 |
88425 |
+ |
Copia-53_VV-I |
LTR/Copia |
scaffold2629 |
88631 |
90030 |
+ |
Copia-53_VV-I |
LTR/Copia |
scaffold2629 |
90592 |
90681 |
+ |
(AT)n |
Simple_repeat |
scaffold2629 |
91782 |
92135 |
+ |
RS13056 |
Unspecified |
scaffold2629 |
93039 |
93062 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
93174 |
93229 |
+ |
Copia-86_ST-I |
LTR/Copia |
scaffold2629 |
96379 |
96477 |
+ |
(CTTTCT)n |
Simple_repeat |
scaffold2629 |
96581 |
96794 |
+ |
RS3252 |
Unspecified |
scaffold2629 |
96888 |
96965 |
+ |
(ATTTTTA)n |
Simple_repeat |
scaffold2629 |
96954 |
96970 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
97394 |
97436 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
97445 |
97501 |
+ |
(TTAAT)n |
Simple_repeat |
scaffold2629 |
97762 |
98199 |
+ |
RS1751 |
Unspecified |
scaffold2629 |
97994 |
98452 |
+ |
RS3835 |
Unspecified |
scaffold2629 |
98468 |
98516 |
+ |
RS3835 |
Unspecified |
scaffold2629 |
98508 |
98598 |
+ |
RS1528 |
Unspecified |
scaffold2629 |
98532 |
98663 |
+ |
RS3835 |
Unspecified |
scaffold2629 |
98597 |
98909 |
+ |
RS1554 |
Unspecified |
scaffold2629 |
99001 |
99035 |
+ |
(TCTTAAC)n |
Simple_repeat |
scaffold2629 |
99112 |
99155 |
+ |
(AT)n |
Simple_repeat |
scaffold2629 |
99285 |
102444 |
+ |
Copia-101_Mad-I |
LTR/Copia |
scaffold2629 |
103019 |
103092 |
+ |
Copia-35_GM-I |
LTR/Copia |
scaffold2629 |
104635 |
105154 |
- |
RS2013 |
Unspecified |
scaffold2629 |
105186 |
105209 |
+ |
(TTAA)n |
Simple_repeat |
scaffold2629 |
105523 |
105574 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
106009 |
106050 |
+ |
(A)n |
Simple_repeat |
scaffold2629 |
106868 |
106905 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
106940 |
107030 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
107221 |
110710 |
- |
Copia-85_ST-I |
LTR/Copia |
scaffold2629 |
111229 |
111285 |
+ |
(TCGACC)n |
Simple_repeat |
scaffold2629 |
111536 |
111784 |
- |
Copia-85_ST-I |
LTR/Copia |
scaffold2629 |
112024 |
112105 |
+ |
(TTA)n |
Simple_repeat |
scaffold2629 |
112209 |
112243 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
112299 |
112380 |
+ |
(TTT)n |
Simple_repeat |
scaffold2629 |
112913 |
112973 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
113704 |
113789 |
+ |
(TCTCATT)n |
Simple_repeat |
scaffold2629 |
113997 |
114020 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
114032 |
114078 |
+ |
(ATTGTG)n |
Simple_repeat |
scaffold2629 |
114643 |
114848 |
- |
RS8802 |
Unspecified |
scaffold2629 |
116950 |
117289 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
117269 |
117289 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
118977 |
119026 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold2629 |
119056 |
119180 |
+ |
(ATT)n |
Simple_repeat |
scaffold2629 |
119455 |
119473 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
119776 |
119802 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
119803 |
119811 |
+ |
(ATTTT)n |
Simple_repeat |
scaffold2629 |
120065 |
120099 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
120330 |
120525 |
+ |
RS5771 |
Unspecified |
scaffold2629 |
120330 |
120553 |
+ |
RS5771 |
Unspecified |
scaffold2629 |
120589 |
120670 |
+ |
(TAT)n |
Simple_repeat |
scaffold2629 |
120671 |
120693 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
121459 |
121503 |
+ |
(TTA)n |
Simple_repeat |
scaffold2629 |
121459 |
121553 |
+ |
(TTA)n |
Simple_repeat |
scaffold2629 |
121495 |
121553 |
+ |
RS177 |
Unspecified |
scaffold2629 |
121551 |
121978 |
+ |
RS288 |
Unspecified |
scaffold2629 |
121985 |
122044 |
+ |
PIGY-I_PS |
LTR/Gypsy |
scaffold2629 |
122164 |
122241 |
+ |
RS530 |
Unspecified |
scaffold2629 |
122176 |
122964 |
+ |
RS2778 |
Unspecified |
scaffold2629 |
123384 |
123783 |
+ |
RS1129 |
Unspecified |
scaffold2629 |
123783 |
123937 |
+ |
(TTA)n |
Simple_repeat |
scaffold2629 |
123938 |
123988 |
- |
RS1879 |
Unspecified |
scaffold2629 |
123992 |
124250 |
+ |
RS1377 |
Unspecified |
scaffold2629 |
125224 |
125251 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
scaffold2629 |
125914 |
126125 |
+ |
MEGY-I_MT |
LTR/Gypsy |
scaffold2629 |
126276 |
126773 |
- |
RS2642 |
Unspecified |
scaffold2629 |
126811 |
126970 |
+ |
RS131 |
Unspecified |
scaffold2629 |
126849 |
127067 |
- |
RS6230 |
Unspecified |
scaffold2629 |
126895 |
127087 |
+ |
RS5864 |
Unspecified |
scaffold2629 |
127226 |
127233 |
+ |
(ACAACAC)n |
Simple_repeat |
scaffold2629 |
127234 |
127266 |
+ |
(CA)n |
Simple_repeat |
scaffold2629 |
127267 |
127314 |
+ |
(ACAACAC)n |
Simple_repeat |
scaffold2629 |
129493 |
130136 |
+ |
MEGY-I_MT |
LTR/Gypsy |
scaffold2629 |
130353 |
133449 |
+ |
MEGY-I_MT |
LTR/Gypsy |
scaffold2629 |
130353 |
133197 |
+ |
MEGY-I_MT |
LTR/Gypsy |
scaffold2629 |
133102 |
133449 |
+ |
RS14569 |
Unspecified |
scaffold2629 |
133456 |
133512 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
136362 |
136377 |
+ |
(ATT)n |
Simple_repeat |
scaffold2629 |
136378 |
136415 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
136416 |
136444 |
+ |
(ATT)n |
Simple_repeat |
scaffold2629 |
137687 |
138790 |
- |
LINE |
LINE(TransposonPSI) |
scaffold2629 |
138825 |
139711 |
+ |
RS12612 |
Unspecified |
scaffold2629 |
140244 |
140373 |
+ |
(ATT)n |
Simple_repeat |
scaffold2629 |
141831 |
141881 |
+ |
(TATAT)n |
Simple_repeat |
scaffold2629 |
141969 |
142232 |
+ |
RS68 |
Unspecified |
scaffold2629 |
142835 |
142880 |
+ |
(AAT)n |
Simple_repeat |
scaffold2629 |
142963 |
142997 |
+ |
(TAATAT)n |
Simple_repeat |
scaffold2629 |
143130 |
143159 |
+ |
(A)n |
Simple_repeat |
scaffold2629 |
143412 |
143433 |
+ |
(A)n |
Simple_repeat |
scaffold2629 |
143455 |
143913 |
+ |
PL773 |
Unspecified |
scaffold2629 |
144037 |
144061 |
+ |
(A)n |
Simple_repeat |
scaffold2629 |
144609 |
144627 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
148162 |
148198 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
157046 |
157224 |
- |
RS79 |
Unspecified |
scaffold2629 |
157253 |
157353 |
+ |
(CTGAA)n |
Simple_repeat |
scaffold2629 |
157368 |
157472 |
+ |
(TAT)n |
Simple_repeat |
scaffold2629 |
157481 |
157490 |
+ |
(CAA)n |
Simple_repeat |
scaffold2629 |
157491 |
157676 |
+ |
EnSpm-34_SBi |
DNA/CMC-EnSpm |
scaffold2629 |
157647 |
157726 |
- |
DNA3-8_STu |
DNA |
scaffold2629 |
157677 |
157704 |
+ |
(CAA)n |
Simple_repeat |
scaffold2629 |
157731 |
157779 |
+ |
(TGAAC)n |
Simple_repeat |
scaffold2629 |
160151 |
160187 |
+ |
(T)n |
Simple_repeat |
scaffold2629 |
162787 |
162848 |
- |
RTE-1_Mad |
LINE/RTE-BovB |
scaffold2629 |
165219 |
165252 |
+ |
A-rich |
Low_complexity |
scaffold2629 |
165830 |
165868 |
+ |
(AAC)n |
Simple_repeat |
scaffold2629 |
165985 |
166066 |
+ |
L1-4_VC |
LINE/L1 |
scaffold2629 |
166142 |
166355 |
- |
RS10864 |
Unspecified |
scaffold2629 |
166887 |
166960 |
+ |
(ATATTT)n |
Simple_repeat |
scaffold2629 |
166930 |
166994 |
+ |
(TTGAATT)n |
Simple_repeat |