scaffold28097 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold28097 |
1 |
245 |
- |
RS14 |
Unspecified |
| scaffold28097 |
285 |
431 |
+ |
RS8733 |
Unspecified |
| scaffold28097 |
290 |
1291 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold28097 |
644 |
920 |
+ |
RS7889 |
Unspecified |
| scaffold28097 |
1097 |
1477 |
+ |
RS3309 |
Unspecified |
| scaffold28097 |
1502 |
1537 |
+ |
(TCGTATG)n |
Simple_repeat |
| scaffold28097 |
1753 |
2014 |
+ |
RS4039 |
Unspecified |
| scaffold28097 |
2081 |
2199 |
- |
RS3254 |
Unspecified |
| scaffold28097 |
2632 |
2749 |
- |
RS6533 |
Unspecified |
| scaffold28097 |
3122 |
3169 |
+ |
(ACAATTT)n |
Simple_repeat |
| scaffold28097 |
3412 |
3679 |
+ |
RS10 |
Unspecified |
| scaffold28097 |
3880 |
3917 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
4233 |
4368 |
+ |
RS10478 |
Unspecified |
| scaffold28097 |
4571 |
4681 |
+ |
RS13968 |
Unspecified |
| scaffold28097 |
4685 |
4886 |
+ |
PL663 |
Unspecified |
| scaffold28097 |
4736 |
4904 |
+ |
RS4333 |
Unspecified |
| scaffold28097 |
4971 |
4993 |
+ |
(A)n |
Simple_repeat |
| scaffold28097 |
5008 |
5457 |
+ |
RS6744 |
Unspecified |
| scaffold28097 |
5480 |
5538 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
6223 |
6256 |
+ |
GA-rich |
Low_complexity |
| scaffold28097 |
6450 |
6801 |
+ |
RS1813 |
Unspecified |
| scaffold28097 |
7247 |
7436 |
+ |
RS10985 |
Unspecified |
| scaffold28097 |
7645 |
7674 |
+ |
(A)n |
Simple_repeat |
| scaffold28097 |
9644 |
9801 |
+ |
RS9760 |
Unspecified |
| scaffold28097 |
11016 |
11034 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
13011 |
13034 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
14593 |
14618 |
+ |
(TTC)n |
Simple_repeat |
| scaffold28097 |
18983 |
19007 |
+ |
(TACA)n |
Simple_repeat |
| scaffold28097 |
19124 |
19172 |
+ |
(TT)n |
Simple_repeat |
| scaffold28097 |
19270 |
19618 |
- |
RS42 |
Unspecified |
| scaffold28097 |
20001 |
20228 |
+ |
RS2992 |
Unspecified |
| scaffold28097 |
20279 |
20435 |
+ |
RS79 |
Unspecified |
| scaffold28097 |
20426 |
20534 |
- |
RS10158 |
Unspecified |
| scaffold28097 |
20436 |
20532 |
+ |
RS79 |
Unspecified |
| scaffold28097 |
20571 |
20831 |
- |
RS11043 |
Unspecified |
| scaffold28097 |
21793 |
21969 |
+ |
RS79 |
Unspecified |
| scaffold28097 |
22022 |
22296 |
+ |
RS17600 |
Unspecified |
| scaffold28097 |
22693 |
22731 |
+ |
RS17600 |
Unspecified |
| scaffold28097 |
22699 |
22963 |
- |
RS17600 |
Unspecified |
| scaffold28097 |
23199 |
23244 |
+ |
EnSpm-N1_HV |
DNA/CMC-EnSpm |
| scaffold28097 |
24011 |
24037 |
+ |
(A)n |
Simple_repeat |
| scaffold28097 |
24083 |
24138 |
+ |
(ATT)n |
Simple_repeat |
| scaffold28097 |
24276 |
24421 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
25001 |
25294 |
+ |
RS1746 |
Unspecified |
| scaffold28097 |
25069 |
25362 |
- |
RS1746 |
Unspecified |
| scaffold28097 |
25497 |
25636 |
+ |
RS4 |
Unspecified |
| scaffold28097 |
25640 |
25671 |
+ |
GA-rich |
Low_complexity |
| scaffold28097 |
26076 |
26391 |
- |
RS1746 |
Unspecified |
| scaffold28097 |
27073 |
27632 |
- |
RS1248 |
Unspecified |
| scaffold28097 |
27354 |
27665 |
+ |
RS1612 |
Unspecified |
| scaffold28097 |
27552 |
27684 |
- |
RS7557 |
Unspecified |
| scaffold28097 |
28765 |
28809 |
+ |
(CT)n |
Simple_repeat |
| scaffold28097 |
29522 |
29540 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
29884 |
30360 |
- |
RS2835 |
Unspecified |
| scaffold28097 |
29975 |
30637 |
- |
RS3407 |
Unspecified |
| scaffold28097 |
30989 |
31052 |
+ |
(CAACCAA)n |
Simple_repeat |
| scaffold28097 |
31194 |
31632 |
- |
RS2626 |
Unspecified |
| scaffold28097 |
31873 |
31920 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
32446 |
32482 |
+ |
RS917 |
Unspecified |
| scaffold28097 |
32450 |
32482 |
- |
PL840 |
Unspecified |
| scaffold28097 |
32507 |
32583 |
+ |
(AGCTG)n |
Simple_repeat |
| scaffold28097 |
34234 |
34295 |
+ |
(ATA)n |
Simple_repeat |
| scaffold28097 |
34299 |
34418 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold28097 |
34445 |
35052 |
+ |
RS6081 |
Unspecified |
| scaffold28097 |
35107 |
35416 |
- |
RS112 |
Unspecified |
| scaffold28097 |
36943 |
37324 |
- |
RS14764 |
Unspecified |
| scaffold28097 |
37334 |
38164 |
+ |
RS5002 |
Unspecified |
| scaffold28097 |
38090 |
38243 |
+ |
RS5002 |
Unspecified |
| scaffold28097 |
38441 |
38619 |
+ |
RS6827 |
Unspecified |
| scaffold28097 |
39480 |
39576 |
- |
hAT-20_Mad |
DNA/hAT-Ac |
| scaffold28097 |
40111 |
40370 |
+ |
RS1 |
Unspecified |
| scaffold28097 |
40901 |
41065 |
+ |
RS4 |
Unspecified |
| scaffold28097 |
41286 |
41562 |
- |
RS2013 |
Unspecified |
| scaffold28097 |
42182 |
42237 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
42368 |
42400 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
42494 |
42538 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold28097 |
42555 |
42598 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
42555 |
42741 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
42585 |
42741 |
- |
RS2013 |
Unspecified |
| scaffold28097 |
42883 |
43199 |
+ |
RS1680 |
Unspecified |
| scaffold28097 |
42943 |
43191 |
+ |
RS3896 |
Unspecified |
| scaffold28097 |
43146 |
43362 |
+ |
RS1232 |
Unspecified |
| scaffold28097 |
43360 |
43441 |
- |
PL754 |
Unspecified |
| scaffold28097 |
43615 |
43667 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
43853 |
44567 |
+ |
RS1560 |
Unspecified |
| scaffold28097 |
44611 |
44629 |
+ |
(AG)n |
Simple_repeat |
| scaffold28097 |
44644 |
44663 |
+ |
(C)n |
Simple_repeat |
| scaffold28097 |
44974 |
45335 |
- |
RS52 |
Unspecified |
| scaffold28097 |
45404 |
45439 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
47092 |
47121 |
+ |
(TTGAA)n |
Simple_repeat |
| scaffold28097 |
47162 |
47181 |
+ |
(A)n |
Simple_repeat |
| scaffold28097 |
47915 |
47967 |
+ |
(ATG)n |
Simple_repeat |
| scaffold28097 |
51472 |
51527 |
+ |
(CAATT)n |
Simple_repeat |
| scaffold28097 |
52051 |
52228 |
- |
RS3745 |
Unspecified |
| scaffold28097 |
52240 |
52260 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
52335 |
52891 |
- |
RS6981 |
Unspecified |
| scaffold28097 |
52930 |
54798 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold28097 |
55100 |
55475 |
- |
RS5595 |
Unspecified |
| scaffold28097 |
55152 |
55685 |
- |
RS5785 |
Unspecified |
| scaffold28097 |
56665 |
56691 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
57228 |
57253 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
57300 |
57403 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold28097 |
57867 |
57889 |
+ |
(AT)n |
Simple_repeat |
| scaffold28097 |
58298 |
58472 |
- |
RS3184 |
Unspecified |
| scaffold28097 |
58956 |
59045 |
+ |
RS11783 |
Unspecified |
| scaffold28097 |
59104 |
59211 |
+ |
RS11783 |
Unspecified |
| scaffold28097 |
59929 |
60055 |
+ |
RS9563 |
Unspecified |
| scaffold28097 |
60447 |
60559 |
+ |
RS7411 |
Unspecified |
| scaffold28097 |
61594 |
62160 |
+ |
PL301 |
Unspecified |
| scaffold28097 |
63113 |
63142 |
+ |
(TGTATA)n |
Simple_repeat |
| scaffold28097 |
63147 |
63234 |
- |
RS217 |
Unspecified |
| scaffold28097 |
63433 |
63566 |
+ |
RS1764 |
Unspecified |
| scaffold28097 |
63708 |
63761 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
63825 |
64058 |
- |
RS4294 |
Unspecified |
| scaffold28097 |
64068 |
64089 |
+ |
(A)n |
Simple_repeat |
| scaffold28097 |
64927 |
64973 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
65297 |
65831 |
+ |
RS1069 |
Unspecified |
| scaffold28097 |
65947 |
66007 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold28097 |
66691 |
66726 |
+ |
(AATATAG)n |
Simple_repeat |
| scaffold28097 |
67591 |
67625 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
67790 |
67829 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
68537 |
68611 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold28097 |
69112 |
69151 |
+ |
(CCCCAT)n |
Simple_repeat |
| scaffold28097 |
69187 |
69357 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold28097 |
69601 |
70465 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold28097 |
70804 |
72415 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold28097 |
72573 |
72837 |
- |
RS10 |
Unspecified |
| scaffold28097 |
73344 |
73604 |
- |
RS365 |
Unspecified |
| scaffold28097 |
74189 |
74232 |
+ |
(A)n |
Simple_repeat |
| scaffold28097 |
74264 |
74355 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold28097 |
75158 |
75235 |
- |
RS15470 |
Unspecified |
| scaffold28097 |
75234 |
75327 |
+ |
RS16382 |
Unspecified |
| scaffold28097 |
76033 |
76073 |
+ |
(ACGGAC)n |
Simple_repeat |
| scaffold28097 |
76214 |
76264 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
76447 |
76743 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
76447 |
76473 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
76465 |
76743 |
- |
RS301 |
Unspecified |
| scaffold28097 |
77830 |
77876 |
+ |
(A)n |
Simple_repeat |
| scaffold28097 |
79696 |
79730 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
79865 |
79892 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold28097 |
80225 |
80248 |
+ |
(A)n |
Simple_repeat |
| scaffold28097 |
85395 |
85443 |
+ |
(GGCCCAC)n |
Simple_repeat |
| scaffold28097 |
85821 |
85891 |
+ |
(CGTGC)n |
Simple_repeat |
| scaffold28097 |
85948 |
86018 |
+ |
(TGCCG)n |
Simple_repeat |
| scaffold28097 |
86838 |
86883 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
87468 |
87500 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
87869 |
87906 |
+ |
(TATATTA)n |
Simple_repeat |
| scaffold28097 |
88239 |
88329 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold28097 |
89403 |
89508 |
- |
RS640 |
Unspecified |
| scaffold28097 |
90012 |
90097 |
+ |
RS4475 |
Unspecified |
| scaffold28097 |
90346 |
90521 |
+ |
RS1098 |
Unspecified |
| scaffold28097 |
92128 |
92159 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
92723 |
92785 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
92884 |
92941 |
+ |
(CTACTC)n |
Simple_repeat |
| scaffold28097 |
93125 |
93311 |
- |
RS5318 |
Unspecified |
| scaffold28097 |
94500 |
94568 |
- |
RS950 |
Unspecified |
| scaffold28097 |
94736 |
94774 |
+ |
(ATT)n |
Simple_repeat |
| scaffold28097 |
94960 |
95290 |
- |
RS1404 |
Unspecified |
| scaffold28097 |
95253 |
95574 |
- |
RS950 |
Unspecified |
| scaffold28097 |
96626 |
96882 |
+ |
RS47 |
Unspecified |
| scaffold28097 |
96890 |
96909 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
97072 |
97250 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold28097 |
98130 |
98398 |
+ |
RS10 |
Unspecified |
| scaffold28097 |
98871 |
99321 |
+ |
PL352 |
Unspecified |
| scaffold28097 |
101684 |
101919 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
101891 |
101919 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
102971 |
103234 |
- |
RS356 |
Unspecified |
| scaffold28097 |
103433 |
103453 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
105710 |
105762 |
- |
RLG_scMaximus_1_1-I |
LTR/Copia |
| scaffold28097 |
105969 |
106037 |
+ |
(A)n |
Simple_repeat |
| scaffold28097 |
106311 |
106381 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold28097 |
106544 |
106584 |
+ |
(AT)n |
Simple_repeat |
| scaffold28097 |
106644 |
106735 |
+ |
(ATT)n |
Simple_repeat |
| scaffold28097 |
107751 |
107804 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold28097 |
107822 |
107861 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold28097 |
108169 |
108210 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold28097 |
109090 |
109352 |
- |
RS1 |
Unspecified |
| scaffold28097 |
109255 |
109370 |
+ |
RS15138 |
Unspecified |
| scaffold28097 |
109705 |
109811 |
+ |
(TTTTTC)n |
Simple_repeat |
| scaffold28097 |
110026 |
110377 |
+ |
RS3208 |
Unspecified |
| scaffold28097 |
111756 |
111772 |
+ |
(A)n |
Simple_repeat |
| scaffold28097 |
112221 |
112273 |
+ |
(TTATATAA)n |
Simple_repeat |
| scaffold28097 |
112475 |
112556 |
- |
COPI1_LTR |
LTR/Copia |
| scaffold28097 |
113247 |
113267 |
+ |
(AT)n |
Simple_repeat |
| scaffold28097 |
113351 |
113411 |
+ |
(AATAATT)n |
Simple_repeat |
| scaffold28097 |
114381 |
114438 |
+ |
(AATAATC)n |
Simple_repeat |
| scaffold28097 |
114608 |
114647 |
+ |
(ATATAA)n |
Simple_repeat |
| scaffold28097 |
114848 |
114978 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold28097 |
115094 |
115257 |
+ |
RS503 |
Unspecified |
| scaffold28097 |
115269 |
115464 |
- |
RS152 |
Unspecified |
| scaffold28097 |
116656 |
116748 |
+ |
RS4475 |
Unspecified |
| scaffold28097 |
118744 |
118891 |
+ |
RS17383 |
Unspecified |
| scaffold28097 |
119777 |
119813 |
+ |
(CAACTCT)n |
Simple_repeat |
| scaffold28097 |
121121 |
121161 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
121214 |
121344 |
+ |
RS248 |
Unspecified |
| scaffold28097 |
121365 |
121735 |
+ |
RS221 |
Unspecified |
| scaffold28097 |
122015 |
122177 |
+ |
RS133 |
Unspecified |
| scaffold28097 |
123198 |
123340 |
- |
RS115 |
Unspecified |
| scaffold28097 |
123595 |
123626 |
+ |
(TATGTA)n |
Simple_repeat |
| scaffold28097 |
123783 |
123822 |
+ |
(TC)n |
Simple_repeat |
| scaffold28097 |
128784 |
128810 |
+ |
(T)n |
Simple_repeat |
| scaffold28097 |
129874 |
130194 |
- |
RS63 |
Unspecified |
| scaffold28097 |
131180 |
131919 |
+ |
OSMAR1 |
DNA/TcMar-Stowaway |
| scaffold28097 |
132208 |
132246 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold28097 |
133987 |
134416 |
- |
RS5662 |
Unspecified |
| scaffold28097 |
134433 |
134471 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
134481 |
134549 |
+ |
GA-rich |
Low_complexity |
| scaffold28097 |
134874 |
134918 |
- |
RS1076 |
Unspecified |
| scaffold28097 |
134920 |
135067 |
- |
RS63 |
Unspecified |
| scaffold28097 |
135543 |
135597 |
+ |
(TTA)n |
Simple_repeat |
| scaffold28097 |
135919 |
136070 |
+ |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold28097 |
136008 |
136081 |
- |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold28097 |
136245 |
136282 |
+ |
(AATTTCA)n |
Simple_repeat |
| scaffold28097 |
136724 |
136889 |
+ |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold28097 |
136959 |
137118 |
+ |
DS-RICE3N |
DNA/hAT-Ac |
| scaffold28097 |
137270 |
137708 |
- |
PL352 |
Unspecified |
| scaffold28097 |
137748 |
137895 |
- |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold28097 |
137913 |
137937 |
+ |
(CATT)n |
Simple_repeat |
| scaffold28097 |
138251 |
138365 |
+ |
PL340 |
Unspecified |
| scaffold28097 |
138364 |
138541 |
- |
PL670 |
Unspecified |
| scaffold28097 |
139784 |
139890 |
- |
PL913 |
Unspecified |
| scaffold28097 |
139901 |
140114 |
+ |
PL670 |
Unspecified |
| scaffold28097 |
141277 |
141677 |
+ |
PL443 |
Unspecified |
| scaffold28097 |
141677 |
141930 |
- |
PL57 |
Unspecified |
| scaffold28097 |
142703 |
142736 |
+ |
(CAAGCC)n |
Simple_repeat |
| scaffold28097 |
142768 |
142898 |
- |
RS2262 |
Unspecified |
| scaffold28097 |
143868 |
143961 |
+ |
A-rich |
Low_complexity |
| scaffold28097 |
145107 |
145145 |
+ |
(CCTCAG)n |
Simple_repeat |
| scaffold28097 |
145551 |
148009 |
+ |
(A)n |
Simple_repeat |