scaffold28880 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold28880 |
1 |
173 |
+ |
PL329 |
Unspecified |
| scaffold28880 |
333 |
357 |
+ |
(T)n |
Simple_repeat |
| scaffold28880 |
702 |
1235 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold28880 |
1463 |
1724 |
- |
RS365 |
Unspecified |
| scaffold28880 |
1723 |
1940 |
+ |
RS376 |
Unspecified |
| scaffold28880 |
2171 |
2202 |
+ |
(T)n |
Simple_repeat |
| scaffold28880 |
2302 |
2799 |
+ |
RS461 |
Unspecified |
| scaffold28880 |
2995 |
3016 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
4895 |
4993 |
+ |
RS4475 |
Unspecified |
| scaffold28880 |
5205 |
5261 |
- |
Copia-88_ST-LTR |
LTR/Copia |
| scaffold28880 |
5720 |
5936 |
- |
RS3535 |
Unspecified |
| scaffold28880 |
6304 |
6555 |
+ |
RS356 |
Unspecified |
| scaffold28880 |
6788 |
6863 |
+ |
RS598 |
Unspecified |
| scaffold28880 |
6951 |
7078 |
+ |
RS335 |
Unspecified |
| scaffold28880 |
7955 |
7985 |
+ |
(T)n |
Simple_repeat |
| scaffold28880 |
8434 |
8522 |
+ |
(TAA)n |
Simple_repeat |
| scaffold28880 |
8700 |
8727 |
+ |
(T)n |
Simple_repeat |
| scaffold28880 |
9004 |
9047 |
+ |
(TTGATTT)n |
Simple_repeat |
| scaffold28880 |
11279 |
11330 |
+ |
(CGCCTTG)n |
Simple_repeat |
| scaffold28880 |
12562 |
12612 |
+ |
(CTTTAT)n |
Simple_repeat |
| scaffold28880 |
15256 |
15397 |
- |
RS13229 |
Unspecified |
| scaffold28880 |
16502 |
16614 |
+ |
RS14303 |
Unspecified |
| scaffold28880 |
16646 |
16789 |
+ |
RS14636 |
Unspecified |
| scaffold28880 |
20911 |
20948 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
22519 |
22585 |
+ |
GA-rich |
Low_complexity |
| scaffold28880 |
22701 |
22783 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
23998 |
24139 |
- |
RS13229 |
Unspecified |
| scaffold28880 |
24855 |
24966 |
+ |
RS14303 |
Unspecified |
| scaffold28880 |
25007 |
25150 |
+ |
RS14636 |
Unspecified |
| scaffold28880 |
25190 |
25226 |
+ |
(AACAC)n |
Simple_repeat |
| scaffold28880 |
26792 |
26884 |
+ |
(AATC)n |
Simple_repeat |
| scaffold28880 |
26948 |
27013 |
+ |
(ATCACACA)n |
Simple_repeat |
| scaffold28880 |
27133 |
27314 |
+ |
RS2101 |
Unspecified |
| scaffold28880 |
27487 |
27524 |
+ |
(TCT)n |
Simple_repeat |
| scaffold28880 |
27579 |
27608 |
+ |
(TCA)n |
Simple_repeat |
| scaffold28880 |
27646 |
27672 |
+ |
(TAC)n |
Simple_repeat |
| scaffold28880 |
27712 |
27876 |
+ |
RS6676 |
Unspecified |
| scaffold28880 |
28008 |
28189 |
- |
RS2101 |
Unspecified |
| scaffold28880 |
28193 |
28255 |
+ |
(AATC)n |
Simple_repeat |
| scaffold28880 |
28377 |
28403 |
+ |
(CAAT)n |
Simple_repeat |
| scaffold28880 |
28810 |
28854 |
+ |
(GGAGGC)n |
Simple_repeat |
| scaffold28880 |
29142 |
29202 |
+ |
(GGT)n |
Simple_repeat |
| scaffold28880 |
29454 |
29487 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
29612 |
29784 |
- |
RS133 |
Unspecified |
| scaffold28880 |
30768 |
30808 |
+ |
(TAA)n |
Simple_repeat |
| scaffold28880 |
30954 |
31187 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold28880 |
31244 |
31566 |
+ |
RS557 |
Unspecified |
| scaffold28880 |
31889 |
32458 |
+ |
G-rich |
Low_complexity |
| scaffold28880 |
32378 |
32458 |
+ |
G-rich |
Low_complexity |
| scaffold28880 |
33386 |
33404 |
+ |
(ATT)n |
Simple_repeat |
| scaffold28880 |
35000 |
35033 |
+ |
(CTCTTC)n |
Simple_repeat |
| scaffold28880 |
35150 |
35257 |
+ |
RS972 |
Unspecified |
| scaffold28880 |
38224 |
38249 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
40963 |
41032 |
- |
RS17326 |
Unspecified |
| scaffold28880 |
41442 |
41466 |
+ |
(AGATGA)n |
Simple_repeat |
| scaffold28880 |
41833 |
41850 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
41916 |
41961 |
+ |
(ATTGA)n |
Simple_repeat |
| scaffold28880 |
42482 |
42527 |
+ |
RS3465 |
Unspecified |
| scaffold28880 |
42776 |
42792 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
42776 |
42880 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
42785 |
42880 |
- |
RS18022 |
Unspecified |
| scaffold28880 |
42859 |
42994 |
+ |
RS1649 |
Unspecified |
| scaffold28880 |
43025 |
43051 |
+ |
(T)n |
Simple_repeat |
| scaffold28880 |
43280 |
43447 |
- |
RS1305 |
Unspecified |
| scaffold28880 |
44792 |
44833 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
46128 |
46214 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
48995 |
49361 |
- |
RS8 |
Unspecified |
| scaffold28880 |
49361 |
49382 |
+ |
(T)n |
Simple_repeat |
| scaffold28880 |
49512 |
49862 |
- |
RS132 |
Unspecified |
| scaffold28880 |
50190 |
50344 |
- |
RS324 |
Unspecified |
| scaffold28880 |
50350 |
50475 |
- |
RS324 |
Unspecified |
| scaffold28880 |
51038 |
51253 |
- |
LINE1-9_ZM |
LINE/L1 |
| scaffold28880 |
51201 |
51253 |
- |
LINE1-9_ZM |
LINE/L1 |
| scaffold28880 |
51576 |
51605 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
52668 |
52931 |
+ |
RS10 |
Unspecified |
| scaffold28880 |
53267 |
53302 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
53343 |
53595 |
- |
RS736 |
Unspecified |
| scaffold28880 |
55136 |
55296 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold28880 |
55458 |
55500 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold28880 |
55686 |
55853 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold28880 |
55944 |
56120 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold28880 |
56199 |
56288 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold28880 |
56315 |
56339 |
+ |
(TAT)n |
Simple_repeat |
| scaffold28880 |
57041 |
57193 |
- |
RS10 |
Unspecified |
| scaffold28880 |
57244 |
57320 |
+ |
(ATA)n |
Simple_repeat |
| scaffold28880 |
57350 |
57448 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold28880 |
57537 |
57566 |
+ |
(TACCAAC)n |
Simple_repeat |
| scaffold28880 |
58745 |
58793 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
61012 |
61110 |
- |
PL393 |
Unspecified |
| scaffold28880 |
61126 |
61156 |
+ |
(AAGAAA)n |
Simple_repeat |
| scaffold28880 |
63955 |
64020 |
+ |
(GAT)n |
Simple_repeat |
| scaffold28880 |
64146 |
64169 |
+ |
(TTA)n |
Simple_repeat |
| scaffold28880 |
64170 |
64212 |
+ |
(T)n |
Simple_repeat |
| scaffold28880 |
64454 |
64513 |
- |
RS13542 |
Unspecified |
| scaffold28880 |
64802 |
64831 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
64879 |
64908 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
65291 |
65325 |
+ |
(TCTTCA)n |
Simple_repeat |
| scaffold28880 |
65404 |
65619 |
+ |
RS6306 |
Unspecified |
| scaffold28880 |
65998 |
66236 |
+ |
RS73 |
Unspecified |
| scaffold28880 |
66291 |
66315 |
+ |
(T)n |
Simple_repeat |
| scaffold28880 |
66485 |
66504 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold28880 |
66505 |
66550 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
66843 |
66941 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
67420 |
67457 |
+ |
(TCAG)n |
Simple_repeat |
| scaffold28880 |
67773 |
67815 |
+ |
RS826 |
Unspecified |
| scaffold28880 |
68227 |
68406 |
+ |
RS431 |
Unspecified |
| scaffold28880 |
68507 |
68574 |
+ |
(AAC)n |
Simple_repeat |
| scaffold28880 |
68575 |
68608 |
+ |
(ATA)n |
Simple_repeat |
| scaffold28880 |
68609 |
68647 |
+ |
(AAC)n |
Simple_repeat |
| scaffold28880 |
68648 |
68700 |
+ |
(AAT)n |
Simple_repeat |
| scaffold28880 |
68701 |
68774 |
+ |
(AAC)n |
Simple_repeat |
| scaffold28880 |
69103 |
69291 |
- |
RS3628 |
Unspecified |
| scaffold28880 |
69257 |
69392 |
- |
RS8209 |
Unspecified |
| scaffold28880 |
70033 |
70147 |
- |
RS17600 |
Unspecified |
| scaffold28880 |
70144 |
70546 |
- |
PL344 |
Unspecified |
| scaffold28880 |
70652 |
70697 |
+ |
(TA)n |
Simple_repeat |
| scaffold28880 |
70996 |
71258 |
+ |
RS240 |
Unspecified |
| scaffold28880 |
71257 |
72117 |
+ |
RS403 |
Unspecified |
| scaffold28880 |
73074 |
73380 |
- |
RS57 |
Unspecified |
| scaffold28880 |
73708 |
73734 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
73791 |
73903 |
- |
RS96 |
Unspecified |
| scaffold28880 |
73791 |
73929 |
- |
RS4042 |
Unspecified |
| scaffold28880 |
74136 |
74354 |
+ |
RS4896 |
Unspecified |
| scaffold28880 |
74275 |
74544 |
+ |
RS1866 |
Unspecified |
| scaffold28880 |
74953 |
75136 |
- |
RS5984 |
Unspecified |
| scaffold28880 |
75478 |
76759 |
+ |
RS716 |
Unspecified |
| scaffold28880 |
77286 |
77557 |
+ |
Copia-3_SL-I |
LTR/Copia |
| scaffold28880 |
78311 |
78354 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
78446 |
78485 |
+ |
(TTATGT)n |
Simple_repeat |
| scaffold28880 |
81555 |
81580 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
81581 |
81601 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
87466 |
87507 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
88536 |
88644 |
+ |
RS13542 |
Unspecified |
| scaffold28880 |
88982 |
89172 |
- |
RS1743 |
Unspecified |
| scaffold28880 |
89172 |
89219 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold28880 |
89719 |
89777 |
- |
HAT-N11_Mad |
DNA/hAT-Ac |
| scaffold28880 |
90267 |
90324 |
+ |
(ATGGAT)n |
Simple_repeat |
| scaffold28880 |
90359 |
90424 |
- |
PL2 |
Unspecified |
| scaffold28880 |
90453 |
90795 |
- |
PL2 |
Unspecified |
| scaffold28880 |
90941 |
91200 |
+ |
RS1377 |
Unspecified |
| scaffold28880 |
92074 |
92202 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold28880 |
92806 |
93123 |
- |
RS846 |
Unspecified |
| scaffold28880 |
92880 |
93123 |
+ |
RS326 |
Unspecified |
| scaffold28880 |
93745 |
93925 |
- |
RS7468 |
Unspecified |
| scaffold28880 |
94089 |
94403 |
+ |
RS326 |
Unspecified |
| scaffold28880 |
95079 |
95122 |
- |
PL424 |
Unspecified |
| scaffold28880 |
95482 |
95604 |
+ |
EnSpm-38_SBi |
DNA/CMC-EnSpm |
| scaffold28880 |
95724 |
95756 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold28880 |
95876 |
95908 |
+ |
(ATAT)n |
Simple_repeat |
| scaffold28880 |
96056 |
96083 |
- |
PL17 |
Unspecified |
| scaffold28880 |
96947 |
97011 |
- |
EnSpm-5_Mad |
DNA/CMC-EnSpm |
| scaffold28880 |
97020 |
97208 |
- |
RS795 |
Unspecified |
| scaffold28880 |
97459 |
97523 |
+ |
EnSpm-5_Mad |
DNA/CMC-EnSpm |
| scaffold28880 |
98527 |
98561 |
+ |
(GGTTTG)n |
Simple_repeat |
| scaffold28880 |
99741 |
99798 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
99956 |
100152 |
- |
RS7079 |
Unspecified |
| scaffold28880 |
100703 |
100801 |
- |
RS3537 |
Unspecified |
| scaffold28880 |
101923 |
101961 |
+ |
(AATATT)n |
Simple_repeat |
| scaffold28880 |
102096 |
102408 |
- |
PL9 |
Unspecified |
| scaffold28880 |
102644 |
102683 |
+ |
(CGG)n |
Simple_repeat |
| scaffold28880 |
104585 |
104634 |
+ |
(CTAG)n |
Simple_repeat |
| scaffold28880 |
107029 |
107196 |
+ |
RS1546 |
Unspecified |
| scaffold28880 |
109641 |
110001 |
+ |
RS221 |
Unspecified |
| scaffold28880 |
112694 |
112712 |
+ |
(T)n |
Simple_repeat |
| scaffold28880 |
115712 |
115740 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
115969 |
115998 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
120300 |
120363 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
121730 |
121772 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
123115 |
123179 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
125663 |
125713 |
+ |
(CTT)n |
Simple_repeat |
| scaffold28880 |
125997 |
126106 |
- |
PL413 |
Unspecified |
| scaffold28880 |
126107 |
126408 |
- |
RS10112 |
Unspecified |
| scaffold28880 |
126598 |
126638 |
+ |
(T)n |
Simple_repeat |
| scaffold28880 |
127714 |
127743 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
127840 |
127981 |
+ |
PL209 |
Unspecified |
| scaffold28880 |
127982 |
128073 |
- |
RS9311 |
Unspecified |
| scaffold28880 |
128101 |
128122 |
+ |
(A)n |
Simple_repeat |
| scaffold28880 |
128123 |
128708 |
+ |
PL209 |
Unspecified |
| scaffold28880 |
128783 |
128910 |
- |
RS1599 |
Unspecified |
| scaffold28880 |
128950 |
128983 |
+ |
(T)n |
Simple_repeat |
| scaffold28880 |
128988 |
129045 |
+ |
A-rich |
Low_complexity |
| scaffold28880 |
129170 |
129468 |
- |
RS1178 |
Unspecified |
| scaffold28880 |
129733 |
129771 |
+ |
(TGAAT)n |
Simple_repeat |
| scaffold28880 |
130014 |
130340 |
+ |
RS1178 |
Unspecified |
| scaffold28880 |
130989 |
131098 |
+ |
(ATGAGAA)n |
Simple_repeat |
| scaffold28880 |
131343 |
131521 |
+ |
RS38 |
Unspecified |
| scaffold28880 |
132087 |
132130 |
+ |
(GTCGGT)n |
Simple_repeat |
| scaffold28880 |
132257 |
132436 |
+ |
RS1332 |
Unspecified |
| scaffold28880 |
132414 |
132561 |
- |
RS3580 |
Unspecified |
| scaffold28880 |
134208 |
134316 |
- |
RS337 |
Unspecified |