scaffold28902 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold28902 |
4 |
1638 |
- |
Copia-4_GM-I |
LTR/Copia |
| scaffold28902 |
13 |
1284 |
- |
RS399 |
Unspecified |
| scaffold28902 |
1821 |
1877 |
+ |
A-rich |
Low_complexity |
| scaffold28902 |
1878 |
1895 |
+ |
(AATTCAA)n |
Simple_repeat |
| scaffold28902 |
2584 |
2635 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold28902 |
2641 |
2687 |
+ |
(TAATAC)n |
Simple_repeat |
| scaffold28902 |
3396 |
3435 |
+ |
(AAT)n |
Simple_repeat |
| scaffold28902 |
3796 |
4060 |
- |
RS356 |
Unspecified |
| scaffold28902 |
4805 |
4954 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold28902 |
5146 |
5246 |
+ |
A-rich |
Low_complexity |
| scaffold28902 |
6301 |
6435 |
+ |
(TTATATGC)n |
Simple_repeat |
| scaffold28902 |
6807 |
7816 |
- |
Copia-4_GM-I |
LTR/Copia |
| scaffold28902 |
7834 |
7966 |
- |
RS4679 |
Unspecified |
| scaffold28902 |
9081 |
9491 |
+ |
RS373 |
Unspecified |
| scaffold28902 |
9085 |
9343 |
- |
RS4679 |
Unspecified |
| scaffold28902 |
9410 |
9658 |
+ |
RS373 |
Unspecified |
| scaffold28902 |
13185 |
13217 |
+ |
(TATTGC)n |
Simple_repeat |
| scaffold28902 |
14457 |
14747 |
- |
PL9 |
Unspecified |
| scaffold28902 |
14609 |
15028 |
- |
PL9 |
Unspecified |
| scaffold28902 |
15378 |
15412 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold28902 |
15883 |
15927 |
- |
PL257 |
Unspecified |
| scaffold28902 |
16326 |
16423 |
- |
RS3226 |
Unspecified |
| scaffold28902 |
16546 |
16578 |
+ |
(TAATA)n |
Simple_repeat |
| scaffold28902 |
16603 |
16625 |
+ |
(T)n |
Simple_repeat |
| scaffold28902 |
17002 |
17048 |
+ |
A-rich |
Low_complexity |
| scaffold28902 |
17401 |
17457 |
+ |
A-rich |
Low_complexity |
| scaffold28902 |
19197 |
19250 |
+ |
(TTTGT)n |
Simple_repeat |
| scaffold28902 |
19785 |
19817 |
+ |
(T)n |
Simple_repeat |
| scaffold28902 |
19914 |
19951 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold28902 |
20626 |
20665 |
+ |
(AAC)n |
Simple_repeat |
| scaffold28902 |
20743 |
20770 |
+ |
(GAGGA)n |
Simple_repeat |
| scaffold28902 |
20775 |
20841 |
+ |
GA-rich |
Low_complexity |
| scaffold28902 |
20842 |
20863 |
+ |
(A)n |
Simple_repeat |
| scaffold28902 |
20864 |
20895 |
+ |
GA-rich |
Low_complexity |
| scaffold28902 |
20865 |
20896 |
+ |
(GAGAG)n |
Simple_repeat |
| scaffold28902 |
21889 |
21949 |
+ |
(T)n |
Simple_repeat |
| scaffold28902 |
22003 |
22077 |
- |
RS3226 |
Unspecified |
| scaffold28902 |
22157 |
22231 |
+ |
RS3226 |
Unspecified |
| scaffold28902 |
22285 |
22336 |
+ |
A-rich |
Low_complexity |
| scaffold28902 |
22456 |
22579 |
+ |
ATRAN |
DNA? |
| scaffold28902 |
22644 |
22739 |
- |
RS1347 |
Unspecified |
| scaffold28902 |
22865 |
22986 |
+ |
ATRAN |
DNA? |
| scaffold28902 |
23208 |
23471 |
+ |
RS365 |
Unspecified |
| scaffold28902 |
23864 |
23900 |
+ |
RS586 |
Unspecified |
| scaffold28902 |
23873 |
24092 |
- |
RS2496 |
Unspecified |
| scaffold28902 |
24235 |
24495 |
+ |
RS356 |
Unspecified |
| scaffold28902 |
25919 |
25968 |
+ |
(ATGG)n |
Simple_repeat |
| scaffold28902 |
26045 |
26314 |
- |
RS10 |
Unspecified |
| scaffold28902 |
26270 |
26320 |
+ |
RS10 |
Unspecified |
| scaffold28902 |
26425 |
26450 |
+ |
(A)n |
Simple_repeat |
| scaffold28902 |
26601 |
26650 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold28902 |
26719 |
26765 |
+ |
(GGAT)n |
Simple_repeat |
| scaffold28902 |
27019 |
27322 |
- |
RS221 |
Unspecified |
| scaffold28902 |
27525 |
27597 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold28902 |
27772 |
27832 |
+ |
(TGG)n |
Simple_repeat |
| scaffold28902 |
27912 |
27940 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold28902 |
27965 |
27988 |
+ |
(T)n |
Simple_repeat |
| scaffold28902 |
27986 |
28048 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold28902 |
28486 |
28731 |
+ |
RS4 |
Unspecified |
| scaffold28902 |
28788 |
28842 |
+ |
(A)n |
Simple_repeat |
| scaffold28902 |
28899 |
29019 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold28902 |
29893 |
29984 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold28902 |
31723 |
31898 |
+ |
Copia-84_ST-I |
LTR/Copia |
| scaffold28902 |
31742 |
31898 |
+ |
Copia-84_ST-I |
LTR/Copia |
| scaffold28902 |
31831 |
32335 |
+ |
Copia-84_ST-I |
LTR/Copia |
| scaffold28902 |
31831 |
31898 |
+ |
Copia-84_ST-I |
LTR/Copia |
| scaffold28902 |
31881 |
32335 |
+ |
PL582 |
Unspecified |
| scaffold28902 |
32686 |
32761 |
+ |
(ATGTCAA)n |
Simple_repeat |
| scaffold28902 |
32863 |
32896 |
+ |
A-rich |
Low_complexity |
| scaffold28902 |
32942 |
33005 |
- |
PL413 |
Unspecified |
| scaffold28902 |
33153 |
33656 |
- |
PL413 |
Unspecified |
| scaffold28902 |
34004 |
34118 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold28902 |
34157 |
34241 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold28902 |
34500 |
34580 |
+ |
(TT)n |
Simple_repeat |
| scaffold28902 |
34641 |
34668 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold28902 |
35181 |
35260 |
+ |
A-rich |
Low_complexity |
| scaffold28902 |
35307 |
35364 |
+ |
A-rich |
Low_complexity |
| scaffold28902 |
35494 |
35608 |
+ |
GA-rich |
Low_complexity |
| scaffold28902 |
35877 |
36012 |
+ |
RS499 |
Unspecified |
| scaffold28902 |
36203 |
36374 |
+ |
RS499 |
Unspecified |
| scaffold28902 |
36432 |
36469 |
+ |
(TATAGAC)n |
Simple_repeat |
| scaffold28902 |
36568 |
36601 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold28902 |
36822 |
36960 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold28902 |
38254 |
38285 |
+ |
(AT)n |
Simple_repeat |
| scaffold28902 |
38409 |
38449 |
+ |
(T)n |
Simple_repeat |
| scaffold28902 |
38590 |
38617 |
+ |
(T)n |
Simple_repeat |
| scaffold28902 |
39192 |
39250 |
+ |
(TTTCT)n |
Simple_repeat |
| scaffold28902 |
40049 |
40158 |
+ |
TPN1_IN |
DNA/CMC-EnSpm |
| scaffold28902 |
40290 |
40829 |
+ |
RS1563 |
Unspecified |
| scaffold28902 |
41505 |
41613 |
- |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold28902 |
42850 |
44660 |
- |
RS200 |
Unspecified |
| scaffold28902 |
43740 |
45242 |
- |
RS801 |
Unspecified |
| scaffold28902 |
44961 |
45396 |
- |
PL770 |
Unspecified |
| scaffold28902 |
45197 |
45583 |
- |
RS21 |
Unspecified |
| scaffold28902 |
45603 |
48254 |
- |
RS51 |
Unspecified |
| scaffold28902 |
48344 |
48693 |
+ |
L1-2_EPa |
LINE/L1 |
| scaffold28902 |
50120 |
50148 |
+ |
(T)n |
Simple_repeat |
| scaffold28902 |
50191 |
50212 |
+ |
(A)n |
Simple_repeat |
| scaffold28902 |
51369 |
51736 |
- |
RS8 |
Unspecified |
| scaffold28902 |
51883 |
51972 |
- |
Copia-62_GM-LTR |
LTR/Copia |
| scaffold28902 |
53951 |
54268 |
- |
RS3356 |
Unspecified |
| scaffold28902 |
53988 |
54268 |
- |
RS3356 |
Unspecified |
| scaffold28902 |
54939 |
55241 |
- |
PL470 |
Unspecified |
| scaffold28902 |
55487 |
55752 |
- |
RS533 |
Unspecified |
| scaffold28902 |
56026 |
56047 |
+ |
(AAT)n |
Simple_repeat |
| scaffold28902 |
56760 |
56793 |
+ |
(T)n |
Simple_repeat |
| scaffold28902 |
57027 |
58244 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold28902 |
59333 |
59435 |
- |
PL470 |
Unspecified |
| scaffold28902 |
59424 |
59715 |
- |
PL469 |
Unspecified |
| scaffold28902 |
62065 |
62107 |
+ |
(GCCCCAGCA)n |
Simple_repeat |
| scaffold28902 |
63668 |
63810 |
- |
RS1094 |
Unspecified |
| scaffold28902 |
63815 |
64118 |
- |
RS1094 |
Unspecified |
| scaffold28902 |
64043 |
64130 |
- |
RS2055 |
Unspecified |
| scaffold28902 |
64123 |
64254 |
- |
RS2055 |
Unspecified |
| scaffold28902 |
64329 |
64567 |
- |
RS2055 |
Unspecified |
| scaffold28902 |
64647 |
64834 |
- |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold28902 |
65004 |
65687 |
- |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold28902 |
66156 |
66323 |
- |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold28902 |
66365 |
67733 |
- |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold28902 |
68326 |
69206 |
+ |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold28902 |
69274 |
69603 |
+ |
Gypsy27-ZM_I-int |
LTR/Gypsy |
| scaffold28902 |
69775 |
70894 |
+ |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold28902 |
71306 |
71350 |
+ |
(CATAA)n |
Simple_repeat |
| scaffold28902 |
73070 |
73114 |
+ |
A-rich |
Low_complexity |
| scaffold28902 |
73363 |
74316 |
- |
Copia10-ZM_I-int |
LTR/Copia |
| scaffold28902 |
74536 |
75833 |
- |
Copia10-ZM_I-int |
LTR/Copia |
| scaffold28902 |
75894 |
76332 |
+ |
PL60 |
Unspecified |
| scaffold28902 |
76623 |
76671 |
+ |
(TTATA)n |
Simple_repeat |
| scaffold28902 |
77141 |
78045 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold28902 |
77480 |
78045 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold28902 |
78129 |
78414 |
- |
RS10321 |
Unspecified |
| scaffold28902 |
78161 |
78700 |
- |
RS3329 |
Unspecified |
| scaffold28902 |
79770 |
80097 |
- |
RS695 |
Unspecified |
| scaffold28902 |
79837 |
80097 |
+ |
PL60 |
Unspecified |
| scaffold28902 |
80089 |
80218 |
+ |
RS4278 |
Unspecified |
| scaffold28902 |
80176 |
80798 |
- |
RS1210 |
Unspecified |
| scaffold28902 |
81088 |
81123 |
+ |
(T)n |
Simple_repeat |
| scaffold28902 |
82118 |
82153 |
+ |
(AACAA)n |
Simple_repeat |
| scaffold28902 |
82290 |
82428 |
+ |
RS4278 |
Unspecified |
| scaffold28902 |
84372 |
84401 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold28902 |
84641 |
84688 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold28902 |
85100 |
85147 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold28902 |
86152 |
86561 |
+ |
PL519 |
Unspecified |
| scaffold28902 |
87218 |
88248 |
+ |
Copia-4_GM-I |
LTR/Copia |
| scaffold28902 |
88256 |
88290 |
+ |
(GTAACT)n |
Simple_repeat |
| scaffold28902 |
89047 |
89118 |
+ |
A-rich |
Low_complexity |
| scaffold28902 |
89721 |
89780 |
+ |
A-rich |
Low_complexity |
| scaffold28902 |
90330 |
90378 |
+ |
(AGCTC)n |
Simple_repeat |
| scaffold28902 |
91101 |
91189 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold28902 |
93151 |
93827 |
- |
RS139 |
Unspecified |
| scaffold28902 |
93151 |
93737 |
- |
RS3023 |
Unspecified |
| scaffold28902 |
93508 |
94056 |
- |
RS6988 |
Unspecified |
| scaffold28902 |
93731 |
94679 |
- |
RS1446 |
Unspecified |
| scaffold28902 |
93988 |
94868 |
+ |
RS644 |
Unspecified |
| scaffold28902 |
96683 |
98069 |
- |
RS1149 |
Unspecified |
| scaffold28902 |
97298 |
98509 |
- |
RS139 |
Unspecified |
| scaffold28902 |
98190 |
98709 |
- |
RS6988 |
Unspecified |
| scaffold28902 |
99348 |
99564 |
- |
RS139 |
Unspecified |
| scaffold28902 |
100764 |
100812 |
+ |
(TTTAG)n |
Simple_repeat |
| scaffold28902 |
100887 |
102187 |
+ |
RAM12_I-int |
LTR/Gypsy |
| scaffold28902 |
102435 |
102522 |
+ |
Gypsy-193_ZM-I |
LTR/Gypsy |
| scaffold28902 |
103061 |
103103 |
+ |
(TTTAG)n |
Simple_repeat |