scaffold29245 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold29245 |
1 |
162 |
- |
PL503 |
Unspecified |
| scaffold29245 |
1234 |
1347 |
- |
RS31 |
Unspecified |
| scaffold29245 |
1349 |
1463 |
- |
RS7411 |
Unspecified |
| scaffold29245 |
1858 |
1984 |
- |
RS9563 |
Unspecified |
| scaffold29245 |
2521 |
2537 |
+ |
(A)n |
Simple_repeat |
| scaffold29245 |
2701 |
2808 |
- |
RS11783 |
Unspecified |
| scaffold29245 |
2867 |
2940 |
- |
RS11783 |
Unspecified |
| scaffold29245 |
4566 |
4584 |
+ |
(TA)n |
Simple_repeat |
| scaffold29245 |
4903 |
4927 |
+ |
(A)n |
Simple_repeat |
| scaffold29245 |
5480 |
5559 |
+ |
(TATTTTA)n |
Simple_repeat |
| scaffold29245 |
5559 |
5583 |
+ |
(A)n |
Simple_repeat |
| scaffold29245 |
5896 |
5925 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold29245 |
6143 |
6195 |
+ |
(TAATA)n |
Simple_repeat |
| scaffold29245 |
6801 |
6837 |
+ |
(T)n |
Simple_repeat |
| scaffold29245 |
7007 |
7018 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold29245 |
7019 |
7080 |
+ |
A-rich |
Low_complexity |
| scaffold29245 |
7111 |
7662 |
+ |
RS5785 |
Unspecified |
| scaffold29245 |
7302 |
7714 |
+ |
RS5595 |
Unspecified |
| scaffold29245 |
11358 |
11395 |
+ |
(AATCA)n |
Simple_repeat |
| scaffold29245 |
12551 |
12664 |
- |
RS11629 |
Unspecified |
| scaffold29245 |
12568 |
12857 |
- |
RS2079 |
Unspecified |
| scaffold29245 |
16110 |
16219 |
- |
RS458 |
Unspecified |
| scaffold29245 |
16223 |
16447 |
+ |
RS18 |
Unspecified |
| scaffold29245 |
16579 |
16611 |
+ |
(GTATAC)n |
Simple_repeat |
| scaffold29245 |
16697 |
16840 |
- |
RS452 |
Unspecified |
| scaffold29245 |
16906 |
17122 |
- |
RS677 |
Unspecified |
| scaffold29245 |
17094 |
17282 |
+ |
PL690 |
Unspecified |
| scaffold29245 |
17532 |
17550 |
+ |
(A)n |
Simple_repeat |
| scaffold29245 |
18692 |
19079 |
- |
RS5028 |
Unspecified |
| scaffold29245 |
18915 |
19161 |
+ |
RS10691 |
Unspecified |
| scaffold29245 |
19171 |
19210 |
+ |
(ATA)n |
Simple_repeat |
| scaffold29245 |
19171 |
19297 |
+ |
(ATA)n |
Simple_repeat |
| scaffold29245 |
19196 |
19297 |
+ |
RS6917 |
Unspecified |
| scaffold29245 |
19942 |
20242 |
+ |
RS12789 |
Unspecified |
| scaffold29245 |
20362 |
20512 |
- |
RS6506 |
Unspecified |
| scaffold29245 |
20500 |
20617 |
- |
RS328 |
Unspecified |
| scaffold29245 |
22400 |
22473 |
+ |
A-rich |
Low_complexity |
| scaffold29245 |
23049 |
23094 |
- |
EnSpm2_PTr |
DNA/CMC-EnSpm |
| scaffold29245 |
23095 |
23149 |
+ |
(TCT)n |
Simple_repeat |
| scaffold29245 |
23150 |
23174 |
- |
EnSpm2_PTr |
DNA/CMC-EnSpm |
| scaffold29245 |
23308 |
23538 |
- |
EnSpm-2_STu |
DNA/CMC-EnSpm |
| scaffold29245 |
23534 |
23636 |
- |
RS16677 |
Unspecified |
| scaffold29245 |
23716 |
23894 |
+ |
RS38 |
Unspecified |
| scaffold29245 |
24383 |
24560 |
+ |
PL610 |
Unspecified |
| scaffold29245 |
25705 |
27470 |
- |
EnSpm-6_STu |
DNA/CMC-EnSpm |
| scaffold29245 |
27476 |
27571 |
+ |
(ATTATA)n |
Simple_repeat |
| scaffold29245 |
27572 |
27675 |
+ |
(ATATAAT)n |
Simple_repeat |
| scaffold29245 |
28330 |
28359 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold29245 |
28457 |
28492 |
+ |
(ATTTCTT)n |
Simple_repeat |
| scaffold29245 |
28864 |
29183 |
- |
RS2389 |
Unspecified |
| scaffold29245 |
29578 |
29723 |
- |
RS7618 |
Unspecified |
| scaffold29245 |
29724 |
29982 |
- |
RS7618 |
Unspecified |
| scaffold29245 |
29981 |
30182 |
- |
RS757 |
Unspecified |
| scaffold29245 |
29981 |
30248 |
+ |
RS68 |
Unspecified |
| scaffold29245 |
30013 |
30248 |
+ |
RS13348 |
Unspecified |
| scaffold29245 |
30245 |
30747 |
+ |
PL883 |
Unspecified |
| scaffold29245 |
31500 |
31531 |
+ |
A-rich |
Low_complexity |
| scaffold29245 |
32201 |
32343 |
+ |
RS1045 |
Unspecified |
| scaffold29245 |
32547 |
32766 |
- |
RS7618 |
Unspecified |
| scaffold29245 |
32765 |
33028 |
+ |
RS68 |
Unspecified |
| scaffold29245 |
32765 |
32962 |
- |
RS757 |
Unspecified |
| scaffold29245 |
32797 |
33028 |
+ |
RS13348 |
Unspecified |
| scaffold29245 |
33025 |
33529 |
+ |
PL883 |
Unspecified |
| scaffold29245 |
33853 |
34374 |
+ |
PL392 |
Unspecified |
| scaffold29245 |
34875 |
35073 |
+ |
RS1900 |
Unspecified |
| scaffold29245 |
37078 |
37115 |
+ |
(TGT)n |
Simple_repeat |
| scaffold29245 |
37978 |
38006 |
+ |
A-rich |
Low_complexity |
| scaffold29245 |
38097 |
38298 |
+ |
RS5119 |
Unspecified |
| scaffold29245 |
38393 |
38462 |
+ |
RS13214 |
Unspecified |
| scaffold29245 |
39023 |
39048 |
+ |
(TGT)n |
Simple_repeat |
| scaffold29245 |
39846 |
39863 |
+ |
(T)n |
Simple_repeat |
| scaffold29245 |
40273 |
40311 |
+ |
(TAGTGAA)n |
Simple_repeat |
| scaffold29245 |
40613 |
40823 |
+ |
RS4503 |
Unspecified |
| scaffold29245 |
40974 |
41013 |
+ |
A-rich |
Low_complexity |
| scaffold29245 |
41125 |
41264 |
- |
RS2846 |
Unspecified |
| scaffold29245 |
41685 |
41757 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold29245 |
42147 |
42327 |
+ |
RS38 |
Unspecified |
| scaffold29245 |
42591 |
42978 |
- |
RS637 |
Unspecified |
| scaffold29245 |
43278 |
43521 |
- |
RS581 |
Unspecified |
| scaffold29245 |
43742 |
43771 |
+ |
(A)n |
Simple_repeat |
| scaffold29245 |
44004 |
44049 |
+ |
(T)n |
Simple_repeat |
| scaffold29245 |
44083 |
44154 |
+ |
(TTT)n |
Simple_repeat |
| scaffold29245 |
44231 |
44290 |
+ |
(TCT)n |
Simple_repeat |
| scaffold29245 |
44607 |
44649 |
+ |
(TTTGAG)n |
Simple_repeat |
| scaffold29245 |
45136 |
45160 |
+ |
(A)n |
Simple_repeat |
| scaffold29245 |
47714 |
47765 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold29245 |
51787 |
51826 |
+ |
(TGA)n |
Simple_repeat |
| scaffold29245 |
51968 |
52404 |
+ |
RS343 |
Unspecified |
| scaffold29245 |
52377 |
52581 |
- |
RS486 |
Unspecified |
| scaffold29245 |
52575 |
52662 |
+ |
A-rich |
Low_complexity |
| scaffold29245 |
52575 |
52868 |
+ |
A-rich |
Low_complexity |
| scaffold29245 |
52644 |
52868 |
+ |
RS486 |
Unspecified |
| scaffold29245 |
53145 |
53163 |
+ |
(A)n |
Simple_repeat |
| scaffold29245 |
53660 |
53703 |
+ |
(T)n |
Simple_repeat |
| scaffold29245 |
53740 |
54350 |
- |
RS161 |
Unspecified |
| scaffold29245 |
54385 |
54536 |
- |
RS4768 |
Unspecified |
| scaffold29245 |
54794 |
55068 |
- |
RS1888 |
Unspecified |
| scaffold29245 |
55104 |
55258 |
- |
RS1305 |
Unspecified |
| scaffold29245 |
55403 |
57049 |
- |
Copia-106_BRa-I |
LTR/Copia |
| scaffold29245 |
57312 |
58242 |
- |
Copia-106_BRa-I |
LTR/Copia |
| scaffold29245 |
58626 |
58668 |
+ |
(T)n |
Simple_repeat |
| scaffold29245 |
58699 |
59072 |
- |
RS8 |
Unspecified |
| scaffold29245 |
59176 |
59269 |
+ |
PL228 |
Unspecified |
| scaffold29245 |
59468 |
59515 |
+ |
(GACCGC)n |
Simple_repeat |
| scaffold29245 |
59559 |
59641 |
+ |
Copia1-PTR_I-int |
LTR/Copia |
| scaffold29245 |
59568 |
59708 |
- |
Copia-106_BRa-I |
LTR/Copia |
| scaffold29245 |
60242 |
60464 |
+ |
RS4 |
Unspecified |
| scaffold29245 |
60472 |
60730 |
+ |
RS1 |
Unspecified |
| scaffold29245 |
61108 |
61377 |
+ |
RS26 |
Unspecified |
| scaffold29245 |
61819 |
61877 |
+ |
(ATAC)n |
Simple_repeat |
| scaffold29245 |
62066 |
62106 |
+ |
(TTTCAA)n |
Simple_repeat |
| scaffold29245 |
62254 |
62275 |
+ |
(ATAC)n |
Simple_repeat |
| scaffold29245 |
62265 |
62301 |
+ |
(CATT)n |
Simple_repeat |
| scaffold29245 |
62614 |
63249 |
+ |
Copia-27_ST-I |
LTR/Copia |
| scaffold29245 |
63285 |
63602 |
- |
RS14053 |
Unspecified |
| scaffold29245 |
63691 |
64048 |
+ |
Copia-27_ST-I |
LTR/Copia |
| scaffold29245 |
64130 |
65231 |
+ |
Copia-27_ST-I |
LTR/Copia |
| scaffold29245 |
65921 |
66844 |
+ |
Copia-17_ST-I |
LTR/Copia |
| scaffold29245 |
66995 |
68552 |
+ |
Copia-17_ST-I |
LTR/Copia |
| scaffold29245 |
68629 |
68675 |
+ |
(ATTC)n |
Simple_repeat |
| scaffold29245 |
70235 |
70287 |
+ |
A-rich |
Low_complexity |
| scaffold29245 |
70268 |
70326 |
+ |
(TATTAA)n |
Simple_repeat |
| scaffold29245 |
70411 |
70516 |
- |
RS7455 |
Unspecified |
| scaffold29245 |
70526 |
70734 |
- |
RS2090 |
Unspecified |
| scaffold29245 |
72361 |
72415 |
+ |
(TTATAA)n |
Simple_repeat |
| scaffold29245 |
72525 |
72662 |
+ |
RS43 |
Unspecified |
| scaffold29245 |
72727 |
72784 |
+ |
(GACCCA)n |
Simple_repeat |
| scaffold29245 |
72787 |
72821 |
+ |
(TGGGTC)n |
Simple_repeat |
| scaffold29245 |
73052 |
73115 |
+ |
A-rich |
Low_complexity |
| scaffold29245 |
73158 |
73216 |
+ |
(CCAGAC)n |
Simple_repeat |
| scaffold29245 |
73256 |
73285 |
+ |
(GGGTC)n |
Simple_repeat |
| scaffold29245 |
73307 |
73338 |
+ |
RS43 |
Unspecified |
| scaffold29245 |
73500 |
73539 |
+ |
RS16607 |
Unspecified |
| scaffold29245 |
73521 |
73577 |
+ |
RS16607 |
Unspecified |
| scaffold29245 |
73545 |
73663 |
+ |
RS16607 |
Unspecified |
| scaffold29245 |
73725 |
74037 |
- |
RS518 |
Unspecified |
| scaffold29245 |
74163 |
74193 |
+ |
(T)n |
Simple_repeat |
| scaffold29245 |
74364 |
74496 |
- |
RS94 |
Unspecified |
| scaffold29245 |
74537 |
74751 |
- |
PL255 |
Unspecified |
| scaffold29245 |
76245 |
76366 |
+ |
(TGTTGT)n |
Simple_repeat |
| scaffold29245 |
76368 |
76611 |
+ |
RS5691 |
Unspecified |
| scaffold29245 |
77053 |
77087 |
+ |
(TAATTT)n |
Simple_repeat |
| scaffold29245 |
77213 |
77498 |
- |
RS1921 |
Unspecified |
| scaffold29245 |
77545 |
77624 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold29245 |
77625 |
77653 |
+ |
(TTG)n |
Simple_repeat |
| scaffold29245 |
77654 |
77786 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold29245 |
77787 |
77806 |
+ |
(TTG)n |
Simple_repeat |
| scaffold29245 |
77807 |
77989 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold29245 |
77990 |
78023 |
+ |
(TATG)n |
Simple_repeat |
| scaffold29245 |
78024 |
78064 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold29245 |
78713 |
79084 |
- |
RS2487 |
Unspecified |
| scaffold29245 |
78713 |
79316 |
- |
RS835 |
Unspecified |
| scaffold29245 |
79311 |
79592 |
- |
RS243 |
Unspecified |
| scaffold29245 |
79638 |
79658 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold29245 |
79916 |
79943 |
+ |
(T)n |
Simple_repeat |
| scaffold29245 |
80645 |
80809 |
+ |
RS2208 |
Unspecified |
| scaffold29245 |
81312 |
81447 |
+ |
RS2208 |
Unspecified |
| scaffold29245 |
82862 |
83295 |
- |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold29245 |
83539 |
83846 |
- |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold29245 |
83861 |
84224 |
- |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold29245 |
84898 |
85116 |
- |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold29245 |
85172 |
85208 |
+ |
(TCTGTCT)n |
Simple_repeat |
| scaffold29245 |
85315 |
85350 |
+ |
(TTTGA)n |
Simple_repeat |
| scaffold29245 |
85638 |
85657 |
+ |
(TAATA)n |
Simple_repeat |
| scaffold29245 |
85658 |
86030 |
+ |
(AT)n |
Simple_repeat |
| scaffold29245 |
85658 |
85681 |
+ |
(AT)n |
Simple_repeat |
| scaffold29245 |
85676 |
86030 |
+ |
RS2305 |
Unspecified |
| scaffold29245 |
86083 |
86119 |
+ |
(TGAATGT)n |
Simple_repeat |
| scaffold29245 |
86150 |
86189 |
+ |
(TTGTGTA)n |
Simple_repeat |
| scaffold29245 |
86247 |
86273 |
+ |
(A)n |
Simple_repeat |
| scaffold29245 |
86474 |
86486 |
+ |
(TATAAT)n |
Simple_repeat |
| scaffold29245 |
86487 |
86529 |
+ |
(ATTAAT)n |
Simple_repeat |
| scaffold29245 |
86850 |
87066 |
+ |
RS234 |
Unspecified |
| scaffold29245 |
87069 |
87357 |
- |
RS7118 |
Unspecified |
| scaffold29245 |
87676 |
87904 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold29245 |
87887 |
88116 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold29245 |
88263 |
88470 |
+ |
RS3947 |
Unspecified |
| scaffold29245 |
88484 |
89153 |
- |
RS646 |
Unspecified |
| scaffold29245 |
90585 |
90742 |
- |
RS280 |
Unspecified |
| scaffold29245 |
90756 |
90811 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold29245 |
90889 |
90951 |
+ |
(TTC)n |
Simple_repeat |
| scaffold29245 |
91340 |
91377 |
+ |
A-rich |
Low_complexity |
| scaffold29245 |
91769 |
91877 |
- |
RS110 |
Unspecified |
| scaffold29245 |
91771 |
91893 |
- |
RS1285 |
Unspecified |
| scaffold29245 |
91966 |
92047 |
+ |
(CATAA)n |
Simple_repeat |
| scaffold29245 |
92250 |
93158 |
- |
RS313 |
Unspecified |
| scaffold29245 |
95701 |
97198 |
+ |
RS434 |
Unspecified |
| scaffold29245 |
96781 |
98138 |
+ |
RS405 |
Unspecified |
| scaffold29245 |
97580 |
98644 |
- |
RS313 |
Unspecified |
| scaffold29245 |
97757 |
98644 |
- |
RS1120 |
Unspecified |
| scaffold29245 |
99239 |
99295 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold29245 |
99887 |
100017 |
+ |
(AAC)n |
Simple_repeat |
| scaffold29245 |
100019 |
100078 |
+ |
(ACCTGCC)n |
Simple_repeat |
| scaffold29245 |
100444 |
100691 |
+ |
RS8935 |
Unspecified |
| scaffold29245 |
100702 |
100973 |
- |
RS4284 |
Unspecified |
| scaffold29245 |
100732 |
101494 |
- |
PL344 |
Unspecified |
| scaffold29245 |
101592 |
101637 |
+ |
(TA)n |
Simple_repeat |
| scaffold29245 |
102625 |
102784 |
+ |
GYPSHAN_MT_gag |
LTR/Gypsy |
| scaffold29245 |
103421 |
103577 |
- |
RS11629 |
Unspecified |
| scaffold29245 |
103438 |
103628 |
+ |
RS259 |
Unspecified |
| scaffold29245 |
103470 |
104421 |
- |
RS218 |
Unspecified |
| scaffold29245 |
104725 |
104785 |
+ |
(GACTTT)n |
Simple_repeat |
| scaffold29245 |
104911 |
105243 |
- |
RS4732 |
Unspecified |
| scaffold29245 |
105639 |
105825 |
- |
RS3094 |
Unspecified |
| scaffold29245 |
105881 |
106064 |
- |
RS3094 |
Unspecified |
| scaffold29245 |
106480 |
106486 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold29245 |
106487 |
106520 |
+ |
(T)n |
Simple_repeat |
| scaffold29245 |
106620 |
106674 |
+ |
(AATCA)n |
Simple_repeat |
| scaffold29245 |
107059 |
107133 |
+ |
(A)n |
Simple_repeat |
| scaffold29245 |
107146 |
107165 |
+ |
(AGT)n |
Simple_repeat |
| scaffold29245 |
111097 |
111141 |
+ |
(CA)n |
Simple_repeat |
| scaffold29245 |
111805 |
111846 |
+ |
(A)n |
Simple_repeat |
| scaffold29245 |
113108 |
113138 |
+ |
(A)n |
Simple_repeat |
| scaffold29245 |
113809 |
113859 |
+ |
(TCTA)n |
Simple_repeat |
| scaffold29245 |
114064 |
114099 |
+ |
(ATAATA)n |
Simple_repeat |