scaffold29296 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold29296 |
496 |
524 |
+ |
(TG)n |
Simple_repeat |
| scaffold29296 |
564 |
1258 |
+ |
RS564 |
Unspecified |
| scaffold29296 |
1178 |
1271 |
+ |
A-rich |
Low_complexity |
| scaffold29296 |
5441 |
5480 |
+ |
(TTCATCT)n |
Simple_repeat |
| scaffold29296 |
5873 |
6102 |
+ |
(TGTAGC)n |
Simple_repeat |
| scaffold29296 |
6030 |
6102 |
+ |
(TGTAGC)n |
Simple_repeat |
| scaffold29296 |
6287 |
6714 |
- |
RS226 |
Unspecified |
| scaffold29296 |
6413 |
6925 |
- |
RS621 |
Unspecified |
| scaffold29296 |
7479 |
7515 |
+ |
(CTTCTTT)n |
Simple_repeat |
| scaffold29296 |
8543 |
8586 |
+ |
(CTCTTTT)n |
Simple_repeat |
| scaffold29296 |
10755 |
11824 |
+ |
RS169 |
Unspecified |
| scaffold29296 |
12108 |
12284 |
+ |
RS11080 |
Unspecified |
| scaffold29296 |
12504 |
12531 |
+ |
(T)n |
Simple_repeat |
| scaffold29296 |
13942 |
14049 |
+ |
RS7215 |
Unspecified |
| scaffold29296 |
14295 |
14383 |
+ |
(TAT)n |
Simple_repeat |
| scaffold29296 |
14616 |
14781 |
- |
RS2851 |
Unspecified |
| scaffold29296 |
14758 |
14858 |
- |
RS2851 |
Unspecified |
| scaffold29296 |
14835 |
14935 |
- |
RS2851 |
Unspecified |
| scaffold29296 |
15899 |
16212 |
- |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold29296 |
16544 |
16657 |
- |
RS16396 |
Unspecified |
| scaffold29296 |
17000 |
17044 |
+ |
(T)n |
Simple_repeat |
| scaffold29296 |
17334 |
17599 |
+ |
RS76 |
Unspecified |
| scaffold29296 |
18363 |
18405 |
+ |
(ATT)n |
Simple_repeat |
| scaffold29296 |
20805 |
21770 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold29296 |
20822 |
21766 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold29296 |
22608 |
23567 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold29296 |
24140 |
24191 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold29296 |
24375 |
25366 |
- |
RS446 |
Unspecified |
| scaffold29296 |
25831 |
25846 |
+ |
Copia-10_TC-I |
LTR/Copia |
| scaffold29296 |
25847 |
25912 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold29296 |
25913 |
25958 |
+ |
Copia-10_TC-I |
LTR/Copia |
| scaffold29296 |
25952 |
26042 |
+ |
Ogre-MT3_I-int |
LTR/Gypsy |
| scaffold29296 |
26706 |
26745 |
+ |
Gypsy-120_SB-I |
LTR/Gypsy |
| scaffold29296 |
26707 |
26751 |
- |
RLG_scTat_2_1-I |
LTR/Gypsy |
| scaffold29296 |
27342 |
27404 |
+ |
(TTGATTA)n |
Simple_repeat |
| scaffold29296 |
27602 |
27680 |
+ |
Gypsy18-PTR_LTR |
LTR/Gypsy |
| scaffold29296 |
27922 |
28183 |
- |
PL541 |
Unspecified |
| scaffold29296 |
28184 |
29268 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold29296 |
29688 |
29728 |
+ |
A-rich |
Low_complexity |
| scaffold29296 |
30102 |
30144 |
+ |
A-rich |
Low_complexity |
| scaffold29296 |
31221 |
31252 |
+ |
(AGTTTT)n |
Simple_repeat |
| scaffold29296 |
31332 |
31357 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold29296 |
31387 |
31558 |
+ |
RS5630 |
Unspecified |
| scaffold29296 |
31696 |
31804 |
- |
RS8868 |
Unspecified |
| scaffold29296 |
32290 |
32356 |
+ |
COPI1_LTR |
LTR/Copia |
| scaffold29296 |
32592 |
32623 |
+ |
(A)n |
Simple_repeat |
| scaffold29296 |
32646 |
32674 |
+ |
(A)n |
Simple_repeat |
| scaffold29296 |
33349 |
33410 |
+ |
(A)n |
Simple_repeat |
| scaffold29296 |
33472 |
33495 |
+ |
(TA)n |
Simple_repeat |
| scaffold29296 |
34007 |
34060 |
+ |
A-rich |
Low_complexity |
| scaffold29296 |
34106 |
34131 |
+ |
(ATCTAC)n |
Simple_repeat |
| scaffold29296 |
34685 |
34797 |
+ |
RS4331 |
Unspecified |
| scaffold29296 |
35702 |
35733 |
+ |
(TTTAAA)n |
Simple_repeat |
| scaffold29296 |
35739 |
36337 |
+ |
(A)n |
Simple_repeat |
| scaffold29296 |
36316 |
36392 |
+ |
(A)n |
Simple_repeat |
| scaffold29296 |
36316 |
36337 |
+ |
(A)n |
Simple_repeat |
| scaffold29296 |
36332 |
36392 |
- |
RS986 |
Unspecified |
| scaffold29296 |
36845 |
36914 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold29296 |
36910 |
37208 |
- |
RS986 |
Unspecified |
| scaffold29296 |
37024 |
37552 |
- |
RS1358 |
Unspecified |
| scaffold29296 |
37549 |
37619 |
- |
RS15302 |
Unspecified |
| scaffold29296 |
37562 |
38297 |
+ |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold29296 |
38069 |
38297 |
+ |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold29296 |
39040 |
39629 |
+ |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold29296 |
39880 |
40555 |
+ |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold29296 |
40598 |
40660 |
+ |
(A)n |
Simple_repeat |
| scaffold29296 |
40715 |
40846 |
+ |
RS14455 |
Unspecified |
| scaffold29296 |
41077 |
41249 |
- |
RS11139 |
Unspecified |
| scaffold29296 |
41691 |
41731 |
+ |
A-rich |
Low_complexity |
| scaffold29296 |
42456 |
42588 |
- |
RS15302 |
Unspecified |
| scaffold29296 |
42531 |
42786 |
- |
RS1464 |
Unspecified |
| scaffold29296 |
43066 |
43176 |
+ |
(ATT)n |
Simple_repeat |
| scaffold29296 |
43388 |
43419 |
+ |
(T)n |
Simple_repeat |
| scaffold29296 |
43936 |
44156 |
+ |
MtPH-A5-Ia |
DNA/PIF-Harbinger |
| scaffold29296 |
44284 |
44874 |
+ |
MtPH-A5-Ia |
DNA/PIF-Harbinger |
| scaffold29296 |
44894 |
44955 |
+ |
(GAT)n |
Simple_repeat |
| scaffold29296 |
45408 |
45607 |
+ |
MtPH-A5-Ia |
DNA/PIF-Harbinger |
| scaffold29296 |
45696 |
45774 |
+ |
MtPH-A6-1-Ia |
DNA/PIF-Harbinger |
| scaffold29296 |
46711 |
46737 |
+ |
(ATTCC)n |
Simple_repeat |
| scaffold29296 |
46757 |
47137 |
+ |
Gypsy-13_Mad-I |
LTR/Gypsy |
| scaffold29296 |
47008 |
47137 |
+ |
Gypsy-13_Mad-I |
LTR/Gypsy |
| scaffold29296 |
47192 |
47206 |
+ |
(TTTTTTC)n |
Simple_repeat |
| scaffold29296 |
47207 |
47241 |
+ |
(TTTTTC)n |
Simple_repeat |
| scaffold29296 |
47242 |
47264 |
+ |
(TTTTTTC)n |
Simple_repeat |
| scaffold29296 |
47285 |
47342 |
+ |
(TGATTT)n |
Simple_repeat |
| scaffold29296 |
49996 |
50601 |
+ |
(A)n |
Simple_repeat |
| scaffold29296 |
50576 |
50601 |
+ |
(A)n |
Simple_repeat |
| scaffold29296 |
50801 |
50829 |
+ |
(TCA)n |
Simple_repeat |
| scaffold29296 |
50896 |
50924 |
+ |
(T)n |
Simple_repeat |
| scaffold29296 |
52659 |
53174 |
+ |
RS14314 |
Unspecified |
| scaffold29296 |
53178 |
53693 |
+ |
RS14314 |
Unspecified |
| scaffold29296 |
53697 |
54212 |
+ |
RS14314 |
Unspecified |
| scaffold29296 |
54413 |
54453 |
+ |
A-rich |
Low_complexity |
| scaffold29296 |
57114 |
57193 |
+ |
(ACGAGC)n |
Simple_repeat |
| scaffold29296 |
58185 |
58211 |
+ |
(G)n |
Simple_repeat |
| scaffold29296 |
58280 |
58995 |
- |
RS1560 |
Unspecified |
| scaffold29296 |
58286 |
59139 |
- |
RS869 |
Unspecified |
| scaffold29296 |
59431 |
59684 |
- |
RS26 |
Unspecified |
| scaffold29296 |
60017 |
60039 |
+ |
(T)n |
Simple_repeat |
| scaffold29296 |
60058 |
60135 |
- |
PL261 |
Unspecified |
| scaffold29296 |
60237 |
60293 |
+ |
(ATTCTTA)n |
Simple_repeat |
| scaffold29296 |
60550 |
60585 |
+ |
(T)n |
Simple_repeat |
| scaffold29296 |
60619 |
60730 |
- |
RS228 |
Unspecified |
| scaffold29296 |
62198 |
62288 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold29296 |
62626 |
62680 |
+ |
A-rich |
Low_complexity |
| scaffold29296 |
64078 |
64106 |
+ |
A-rich |
Low_complexity |
| scaffold29296 |
64281 |
64458 |
+ |
RS1230 |
Unspecified |
| scaffold29296 |
64745 |
65082 |
+ |
RS9672 |
Unspecified |
| scaffold29296 |
65623 |
66006 |
+ |
RS1230 |
Unspecified |
| scaffold29296 |
66088 |
66123 |
+ |
(TATACA)n |
Simple_repeat |
| scaffold29296 |
66352 |
66379 |
+ |
(GGATC)n |
Simple_repeat |
| scaffold29296 |
66557 |
66604 |
+ |
A-rich |
Low_complexity |
| scaffold29296 |
67021 |
67056 |
+ |
(TTA)n |
Simple_repeat |
| scaffold29296 |
67206 |
67260 |
+ |
(CTT)n |
Simple_repeat |
| scaffold29296 |
68055 |
68088 |
- |
RS1468 |
Unspecified |
| scaffold29296 |
68269 |
68524 |
- |
RS1468 |
Unspecified |
| scaffold29296 |
68801 |
69774 |
+ |
RS218 |
Unspecified |
| scaffold29296 |
68968 |
69820 |
+ |
PL761 |
Unspecified |
| scaffold29296 |
69832 |
69869 |
+ |
(TTAG)n |
Simple_repeat |
| scaffold29296 |
70413 |
70756 |
+ |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold29296 |
71176 |
71235 |
+ |
Gypsy-9_Mad-I |
LTR/Gypsy |
| scaffold29296 |
71727 |
71756 |
+ |
(GAA)n |
Simple_repeat |
| scaffold29296 |
71951 |
72611 |
+ |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold29296 |
73021 |
75871 |
+ |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold29296 |
76226 |
76266 |
+ |
A-rich |
Low_complexity |
| scaffold29296 |
76906 |
76938 |
+ |
(TTGTTGT)n |
Simple_repeat |
| scaffold29296 |
79299 |
79336 |
+ |
A-rich |
Low_complexity |
| scaffold29296 |
79551 |
80111 |
+ |
RS2758 |
Unspecified |
| scaffold29296 |
80113 |
80633 |
- |
RS934 |
Unspecified |
| scaffold29296 |
80768 |
80794 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold29296 |
81446 |
81486 |
+ |
(TAGCAA)n |
Simple_repeat |
| scaffold29296 |
82759 |
82796 |
+ |
GA-rich |
Low_complexity |
| scaffold29296 |
83775 |
83806 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold29296 |
84176 |
84504 |
+ |
RS228 |
Unspecified |
| scaffold29296 |
84953 |
85033 |
+ |
(ATATA)n |
Simple_repeat |
| scaffold29296 |
85896 |
86240 |
- |
SZ-52_int-int |
LTR/Gypsy |
| scaffold29296 |
90114 |
90389 |
- |
RS2187 |
Unspecified |
| scaffold29296 |
90192 |
90613 |
- |
PL706 |
Unspecified |
| scaffold29296 |
90387 |
91644 |
- |
RS23 |
Unspecified |
| scaffold29296 |
92169 |
92504 |
+ |
RS5987 |
Unspecified |
| scaffold29296 |
93198 |
93250 |
+ |
Ogre-MT3_I-int |
LTR/Gypsy |
| scaffold29296 |
93219 |
93335 |
+ |
Gypsy-21_ST-I |
LTR/Gypsy |
| scaffold29296 |
94249 |
94370 |
+ |
Ogre-PT3_I-int |
LTR/Gypsy |
| scaffold29296 |
94686 |
96770 |
- |
RS254 |
Unspecified |
| scaffold29296 |
96766 |
97107 |
+ |
RS667 |
Unspecified |
| scaffold29296 |
96767 |
97246 |
- |
RS348 |
Unspecified |
| scaffold29296 |
96880 |
97246 |
- |
RS66 |
Unspecified |
| scaffold29296 |
98729 |
99903 |
+ |
RS9 |
Unspecified |
| scaffold29296 |
102106 |
102145 |
+ |
(TTTTGAA)n |
Simple_repeat |