scaffold29674 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold29674 |
1 |
1548 |
- |
RS420 |
Unspecified |
| scaffold29674 |
794 |
1698 |
- |
PL891 |
Unspecified |
| scaffold29674 |
1846 |
2388 |
- |
PL405 |
Unspecified |
| scaffold29674 |
3433 |
4886 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold29674 |
4671 |
5761 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold29674 |
4993 |
6566 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold29674 |
6470 |
7983 |
- |
PL816 |
Unspecified |
| scaffold29674 |
7378 |
8600 |
- |
RS420 |
Unspecified |
| scaffold29674 |
8601 |
8901 |
+ |
RS265 |
Unspecified |
| scaffold29674 |
9216 |
9304 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
11226 |
11265 |
+ |
(CTTCGT)n |
Simple_repeat |
| scaffold29674 |
11325 |
11387 |
+ |
(TTTTTGA)n |
Simple_repeat |
| scaffold29674 |
13393 |
13608 |
+ |
(CATCATT)n |
Simple_repeat |
| scaffold29674 |
15061 |
15537 |
- |
RS5460 |
Unspecified |
| scaffold29674 |
15879 |
16117 |
+ |
PL13 |
Unspecified |
| scaffold29674 |
18366 |
18434 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold29674 |
18836 |
18892 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold29674 |
18900 |
18933 |
+ |
(AATACC)n |
Simple_repeat |
| scaffold29674 |
19683 |
19728 |
+ |
(TAA)n |
Simple_repeat |
| scaffold29674 |
19986 |
20028 |
+ |
(TATGT)n |
Simple_repeat |
| scaffold29674 |
20192 |
20235 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold29674 |
20498 |
20556 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
21062 |
21140 |
- |
COP14_I_MT-int |
LTR/Copia |
| scaffold29674 |
21343 |
21424 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
21621 |
21660 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
22551 |
22615 |
+ |
(TATTTA)n |
Simple_repeat |
| scaffold29674 |
23167 |
23459 |
+ |
(ATAC)n |
Simple_repeat |
| scaffold29674 |
23167 |
23233 |
+ |
(ATAC)n |
Simple_repeat |
| scaffold29674 |
23220 |
23459 |
+ |
RS10486 |
Unspecified |
| scaffold29674 |
23460 |
24434 |
+ |
RS1447 |
Unspecified |
| scaffold29674 |
24785 |
25877 |
- |
RS471 |
Unspecified |
| scaffold29674 |
27544 |
27573 |
+ |
(A)n |
Simple_repeat |
| scaffold29674 |
28312 |
28337 |
+ |
(G)n |
Simple_repeat |
| scaffold29674 |
28368 |
28396 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
28620 |
28680 |
+ |
(ACA)n |
Simple_repeat |
| scaffold29674 |
29114 |
29179 |
+ |
(ACCAT)n |
Simple_repeat |
| scaffold29674 |
29327 |
29354 |
+ |
(ACAC)n |
Simple_repeat |
| scaffold29674 |
29565 |
29600 |
+ |
GA-rich |
Low_complexity |
| scaffold29674 |
30845 |
30881 |
+ |
RS549 |
Unspecified |
| scaffold29674 |
30883 |
31105 |
+ |
RS549 |
Unspecified |
| scaffold29674 |
31100 |
31153 |
+ |
RS549 |
Unspecified |
| scaffold29674 |
31916 |
31955 |
+ |
GA-rich |
Low_complexity |
| scaffold29674 |
32850 |
32978 |
+ |
(GAACT)n |
Simple_repeat |
| scaffold29674 |
32940 |
32979 |
+ |
(AACTGA)n |
Simple_repeat |
| scaffold29674 |
33640 |
33714 |
+ |
(GTTTGT)n |
Simple_repeat |
| scaffold29674 |
34390 |
34816 |
+ |
RS227 |
Unspecified |
| scaffold29674 |
34461 |
34886 |
+ |
RS227 |
Unspecified |
| scaffold29674 |
34530 |
34955 |
+ |
RS227 |
Unspecified |
| scaffold29674 |
34600 |
35024 |
+ |
RS227 |
Unspecified |
| scaffold29674 |
36217 |
36255 |
+ |
(TTTTGT)n |
Simple_repeat |
| scaffold29674 |
36984 |
37130 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold29674 |
37131 |
37399 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold29674 |
37473 |
37614 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold29674 |
37674 |
37721 |
+ |
PL608 |
Unspecified |
| scaffold29674 |
38086 |
38451 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold29674 |
38130 |
38370 |
- |
Gypsy21-PTR_I-int |
LTR/Gypsy |
| scaffold29674 |
40891 |
40975 |
+ |
(TTTCTT)n |
Simple_repeat |
| scaffold29674 |
41702 |
42263 |
- |
RS3005 |
Unspecified |
| scaffold29674 |
41763 |
42398 |
+ |
RS661 |
Unspecified |
| scaffold29674 |
43485 |
43524 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
43552 |
43854 |
- |
PL5 |
Unspecified |
| scaffold29674 |
45602 |
45716 |
- |
RS64 |
Unspecified |
| scaffold29674 |
48094 |
48125 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold29674 |
48412 |
48443 |
+ |
(TTTGCA)n |
Simple_repeat |
| scaffold29674 |
48591 |
48652 |
+ |
(TTTGA)n |
Simple_repeat |
| scaffold29674 |
49076 |
49143 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
50346 |
50382 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold29674 |
50471 |
50527 |
+ |
(TTATGT)n |
Simple_repeat |
| scaffold29674 |
51177 |
51272 |
+ |
RS1494 |
Unspecified |
| scaffold29674 |
51321 |
51389 |
+ |
RS868 |
Unspecified |
| scaffold29674 |
51501 |
51598 |
+ |
Gypsy22-ZM_I-int |
LTR/Gypsy |
| scaffold29674 |
51765 |
52812 |
+ |
Gypsy-6_CP-I |
LTR/Gypsy |
| scaffold29674 |
52968 |
53015 |
+ |
Gypsy-13_TA-I |
LTR/Gypsy |
| scaffold29674 |
53356 |
53476 |
+ |
(TATAATT)n |
Simple_repeat |
| scaffold29674 |
53620 |
53678 |
+ |
(AAT)n |
Simple_repeat |
| scaffold29674 |
53754 |
53796 |
+ |
(ATA)n |
Simple_repeat |
| scaffold29674 |
54877 |
54907 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
54947 |
54985 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
55191 |
55281 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
55336 |
55381 |
+ |
(TA)n |
Simple_repeat |
| scaffold29674 |
55539 |
55956 |
+ |
PL874 |
Unspecified |
| scaffold29674 |
55989 |
56078 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold29674 |
56168 |
56483 |
- |
RS14 |
Unspecified |
| scaffold29674 |
56485 |
57524 |
- |
RS14 |
Unspecified |
| scaffold29674 |
57101 |
57731 |
+ |
RS936 |
Unspecified |
| scaffold29674 |
57235 |
57877 |
+ |
RS642 |
Unspecified |
| scaffold29674 |
57544 |
58338 |
+ |
RS902 |
Unspecified |
| scaffold29674 |
58337 |
58393 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold29674 |
59242 |
59295 |
+ |
Gypsy-13_TA-I |
LTR/Gypsy |
| scaffold29674 |
59297 |
59352 |
+ |
(TTAATAA)n |
Simple_repeat |
| scaffold29674 |
59331 |
59375 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold29674 |
59949 |
59989 |
+ |
(TTCTTT)n |
Simple_repeat |
| scaffold29674 |
60003 |
60080 |
+ |
(CAA)n |
Simple_repeat |
| scaffold29674 |
60498 |
60552 |
+ |
(TTTCA)n |
Simple_repeat |
| scaffold29674 |
60702 |
60779 |
+ |
(GCTCT)n |
Simple_repeat |
| scaffold29674 |
60961 |
61030 |
- |
RS4284 |
Unspecified |
| scaffold29674 |
61311 |
61341 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
61381 |
61419 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
61580 |
61724 |
+ |
A-rich |
Low_complexity |
| scaffold29674 |
61779 |
61824 |
+ |
(TA)n |
Simple_repeat |
| scaffold29674 |
63787 |
63923 |
- |
RS1173 |
Unspecified |
| scaffold29674 |
63953 |
64059 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold29674 |
64096 |
65279 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold29674 |
65836 |
66186 |
+ |
RS273 |
Unspecified |
| scaffold29674 |
68107 |
68142 |
+ |
(TTGACT)n |
Simple_repeat |
| scaffold29674 |
68457 |
68482 |
+ |
(A)n |
Simple_repeat |
| scaffold29674 |
69372 |
69694 |
+ |
RS748 |
Unspecified |