scaffold3004 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3004 |
34 |
170 |
+ |
RS9352 |
Unspecified |
| scaffold3004 |
171 |
337 |
+ |
RS4744 |
Unspecified |
| scaffold3004 |
384 |
859 |
- |
RS6763 |
Unspecified |
| scaffold3004 |
592 |
906 |
+ |
RS1559 |
Unspecified |
| scaffold3004 |
1115 |
1473 |
- |
RS1042 |
Unspecified |
| scaffold3004 |
1501 |
1530 |
+ |
(GACAC)n |
Simple_repeat |
| scaffold3004 |
2399 |
2524 |
+ |
(TTATAA)n |
Simple_repeat |
| scaffold3004 |
5178 |
5407 |
+ |
PL131 |
Unspecified |
| scaffold3004 |
6567 |
6802 |
+ |
RS1578 |
Unspecified |
| scaffold3004 |
6984 |
7579 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold3004 |
7527 |
7579 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold3004 |
11297 |
11320 |
+ |
(AG)n |
Simple_repeat |
| scaffold3004 |
12775 |
12842 |
+ |
(TTCCTC)n |
Simple_repeat |
| scaffold3004 |
13718 |
13820 |
+ |
RS14892 |
Unspecified |
| scaffold3004 |
15092 |
15122 |
+ |
(ATTTGA)n |
Simple_repeat |
| scaffold3004 |
15340 |
15764 |
- |
PL3 |
Unspecified |
| scaffold3004 |
15797 |
15842 |
+ |
(TT)n |
Simple_repeat |
| scaffold3004 |
15797 |
16039 |
+ |
(TT)n |
Simple_repeat |
| scaffold3004 |
15827 |
16039 |
- |
RS41 |
Unspecified |
| scaffold3004 |
16347 |
16418 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3004 |
16850 |
16940 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold3004 |
17210 |
17300 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold3004 |
17912 |
18189 |
+ |
RS970 |
Unspecified |
| scaffold3004 |
18609 |
18657 |
+ |
(GGT)n |
Simple_repeat |
| scaffold3004 |
20025 |
20173 |
+ |
(ATCCGAT)n |
Simple_repeat |
| scaffold3004 |
20361 |
20395 |
+ |
(TACAA)n |
Simple_repeat |
| scaffold3004 |
20904 |
20959 |
+ |
(CGATATC)n |
Simple_repeat |
| scaffold3004 |
21013 |
21044 |
+ |
(TCGGA)n |
Simple_repeat |
| scaffold3004 |
21330 |
21832 |
+ |
RS5002 |
Unspecified |
| scaffold3004 |
22537 |
22571 |
+ |
(CATAT)n |
Simple_repeat |
| scaffold3004 |
23473 |
23656 |
- |
RS1337 |
Unspecified |
| scaffold3004 |
23837 |
23862 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3004 |
24355 |
24385 |
+ |
(T)n |
Simple_repeat |
| scaffold3004 |
24617 |
24676 |
+ |
(T)n |
Simple_repeat |
| scaffold3004 |
26089 |
26162 |
+ |
RS13271 |
Unspecified |
| scaffold3004 |
26163 |
26222 |
- |
Copia-36_GM-I |
LTR/Copia |
| scaffold3004 |
26178 |
27409 |
+ |
COP3_I_MT-int |
LTR/Copia |
| scaffold3004 |
27403 |
27589 |
+ |
RS13271 |
Unspecified |
| scaffold3004 |
28237 |
28328 |
+ |
(AAGTTTTCTG)n |
Simple_repeat |
| scaffold3004 |
28339 |
28581 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3004 |
28339 |
28495 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3004 |
28426 |
28581 |
- |
RS1323 |
Unspecified |
| scaffold3004 |
29746 |
30807 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold3004 |
31716 |
31776 |
+ |
(CA)n |
Simple_repeat |
| scaffold3004 |
31877 |
31969 |
+ |
(TATATAA)n |
Simple_repeat |
| scaffold3004 |
32180 |
32191 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold3004 |
32192 |
32363 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3004 |
32364 |
32424 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold3004 |
32598 |
32653 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold3004 |
33738 |
34342 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold3004 |
34603 |
34650 |
+ |
(ATGATGG)n |
Simple_repeat |
| scaffold3004 |
34763 |
34782 |
+ |
(G)n |
Simple_repeat |
| scaffold3004 |
34923 |
34980 |
+ |
(TTTTCTT)n |
Simple_repeat |
| scaffold3004 |
36368 |
36430 |
+ |
Gypsy-9_Mad-I |
LTR/Gypsy |
| scaffold3004 |
38237 |
38277 |
+ |
A-rich |
Low_complexity |
| scaffold3004 |
38712 |
38754 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold3004 |
39202 |
39247 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3004 |
39349 |
39382 |
+ |
(AT)n |
Simple_repeat |
| scaffold3004 |
39489 |
39510 |
+ |
(A)n |
Simple_repeat |
| scaffold3004 |
40142 |
40176 |
+ |
(T)n |
Simple_repeat |
| scaffold3004 |
40696 |
41084 |
+ |
RS11398 |
Unspecified |
| scaffold3004 |
41935 |
41973 |
+ |
A-rich |
Low_complexity |
| scaffold3004 |
42380 |
42409 |
+ |
(TA)n |
Simple_repeat |
| scaffold3004 |
43835 |
43913 |
+ |
A-rich |
Low_complexity |
| scaffold3004 |
44497 |
45358 |
+ |
RS13496 |
Unspecified |
| scaffold3004 |
45356 |
45805 |
+ |
PL304 |
Unspecified |
| scaffold3004 |
45855 |
45891 |
+ |
(T)n |
Simple_repeat |
| scaffold3004 |
46013 |
46031 |
+ |
(A)n |
Simple_repeat |
| scaffold3004 |
46035 |
46077 |
+ |
GA-rich |
Low_complexity |
| scaffold3004 |
46154 |
46344 |
+ |
RS1631 |
Unspecified |
| scaffold3004 |
46629 |
46781 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold3004 |
46896 |
46924 |
+ |
(GTCGG)n |
Simple_repeat |
| scaffold3004 |
47134 |
47503 |
+ |
RS2487 |
Unspecified |
| scaffold3004 |
47581 |
47642 |
+ |
(T)n |
Simple_repeat |
| scaffold3004 |
48268 |
48685 |
+ |
RS8950 |
Unspecified |
| scaffold3004 |
49143 |
49228 |
- |
TA11 |
LINE/L1 |
| scaffold3004 |
49287 |
50534 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold3004 |
49626 |
50491 |
- |
ATLINE1_12 |
LINE/L1 |
| scaffold3004 |
50883 |
50912 |
+ |
(TGAAT)n |
Simple_repeat |
| scaffold3004 |
50999 |
51089 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3004 |
51098 |
51201 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold3004 |
52359 |
52457 |
- |
MuDR-11_GM |
DNA/MULE-MuDR |
| scaffold3004 |
52579 |
52683 |
+ |
RS3132 |
Unspecified |
| scaffold3004 |
52935 |
52981 |
+ |
A-rich |
Low_complexity |
| scaffold3004 |
53734 |
53794 |
+ |
(ATAATA)n |
Simple_repeat |
| scaffold3004 |
55339 |
55739 |
- |
RS29 |
Unspecified |
| scaffold3004 |
56622 |
56730 |
+ |
(TTTTTTA)n |
Simple_repeat |
| scaffold3004 |
57977 |
57995 |
+ |
(A)n |
Simple_repeat |
| scaffold3004 |
59107 |
59203 |
+ |
PL436 |
Unspecified |
| scaffold3004 |
59121 |
59214 |
- |
RS4475 |
Unspecified |
| scaffold3004 |
59809 |
59958 |
- |
PL476 |
Unspecified |
| scaffold3004 |
60052 |
60133 |
+ |
Sat-1_CPa |
Satellite |
| scaffold3004 |
60087 |
60151 |
+ |
EnSpm1_SB |
DNA/CMC-EnSpm |
| scaffold3004 |
61062 |
61284 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold3004 |
61571 |
61613 |
+ |
(T)n |
Simple_repeat |
| scaffold3004 |
62123 |
62221 |
- |
RS2229 |
Unspecified |
| scaffold3004 |
63828 |
63868 |
+ |
(ATGAATG)n |
Simple_repeat |
| scaffold3004 |
64166 |
64198 |
+ |
RS248 |
Unspecified |
| scaffold3004 |
64612 |
64642 |
+ |
(GGCCC)n |
Simple_repeat |
| scaffold3004 |
64768 |
64984 |
+ |
PL2 |
Unspecified |
| scaffold3004 |
64997 |
65065 |
+ |
(ACA)n |
Simple_repeat |
| scaffold3004 |
65321 |
65758 |
- |
RS1594 |
Unspecified |
| scaffold3004 |
65758 |
66005 |
+ |
PL2 |
Unspecified |
| scaffold3004 |
66730 |
66817 |
+ |
Copia-75_ST-I |
LTR/Copia |
| scaffold3004 |
67258 |
67465 |
+ |
RS2092 |
Unspecified |
| scaffold3004 |
68394 |
68427 |
+ |
A-rich |
Low_complexity |
| scaffold3004 |
68677 |
68732 |
+ |
RS6434 |
Unspecified |
| scaffold3004 |
68750 |
68865 |
+ |
RS6434 |
Unspecified |
| scaffold3004 |
69000 |
69185 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold3004 |
71390 |
71459 |
- |
EnSpm-39_SBi |
DNA/CMC-EnSpm |
| scaffold3004 |
71410 |
71467 |
- |
SINE2-1_STu |
SINE/tRNA |
| scaffold3004 |
75409 |
75511 |
+ |
RS14892 |
Unspecified |
| scaffold3004 |
76411 |
76431 |
+ |
(A)n |
Simple_repeat |
| scaffold3004 |
77193 |
77216 |
+ |
(A)n |
Simple_repeat |
| scaffold3004 |
77348 |
77386 |
+ |
(CTCTTT)n |
Simple_repeat |
| scaffold3004 |
77387 |
77393 |
+ |
(CTCCTT)n |
Simple_repeat |
| scaffold3004 |
77688 |
77704 |
+ |
(A)n |
Simple_repeat |
| scaffold3004 |
77830 |
78173 |
- |
RS1351 |
Unspecified |
| scaffold3004 |
78171 |
78222 |
- |
PL169 |
Unspecified |
| scaffold3004 |
79034 |
79256 |
- |
RS12651 |
Unspecified |
| scaffold3004 |
79357 |
79473 |
- |
RS9126 |
Unspecified |
| scaffold3004 |
79553 |
79652 |
- |
RS7349 |
Unspecified |
| scaffold3004 |
79579 |
80047 |
- |
RS12063 |
Unspecified |
| scaffold3004 |
79916 |
80125 |
+ |
RS2863 |
Unspecified |
| scaffold3004 |
80494 |
80615 |
- |
RS6880 |
Unspecified |
| scaffold3004 |
82143 |
82474 |
+ |
RS319 |
Unspecified |
| scaffold3004 |
83466 |
83572 |
- |
RS4475 |
Unspecified |
| scaffold3004 |
84980 |
85071 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold3004 |
85834 |
85996 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold3004 |
85990 |
86856 |
+ |
RS446 |
Unspecified |
| scaffold3004 |
89814 |
89860 |
+ |
A-rich |
Low_complexity |
| scaffold3004 |
90090 |
90121 |
+ |
(CAT)n |
Simple_repeat |
| scaffold3004 |
90307 |
90983 |
- |
PIGY-I_PS |
LTR/Gypsy |