scaffold30546 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold30546 |
91 |
1125 |
- |
RS955 |
Unspecified |
| scaffold30546 |
531 |
1095 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold30546 |
1293 |
1534 |
- |
RS11088 |
Unspecified |
| scaffold30546 |
1890 |
1914 |
+ |
(T)n |
Simple_repeat |
| scaffold30546 |
2941 |
2979 |
+ |
(ACTTTTT)n |
Simple_repeat |
| scaffold30546 |
4952 |
5360 |
- |
RS29 |
Unspecified |
| scaffold30546 |
6099 |
6151 |
+ |
A-rich |
Low_complexity |
| scaffold30546 |
6971 |
7030 |
+ |
(TTATTG)n |
Simple_repeat |
| scaffold30546 |
9514 |
9665 |
- |
RS16339 |
Unspecified |
| scaffold30546 |
9691 |
9711 |
+ |
(T)n |
Simple_repeat |
| scaffold30546 |
9781 |
9850 |
+ |
(TTGTTA)n |
Simple_repeat |
| scaffold30546 |
9848 |
10184 |
- |
PL920 |
Unspecified |
| scaffold30546 |
10536 |
10578 |
+ |
A-rich |
Low_complexity |
| scaffold30546 |
10860 |
10934 |
- |
Gypsy-27_VV-I |
LTR/Gypsy |
| scaffold30546 |
14584 |
14621 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold30546 |
15105 |
15196 |
- |
RS2709 |
Unspecified |
| scaffold30546 |
15218 |
15259 |
+ |
A-rich |
Low_complexity |
| scaffold30546 |
16111 |
16165 |
- |
LINE1-42_SBi |
LINE/L1 |
| scaffold30546 |
16461 |
16503 |
+ |
A-rich |
Low_complexity |
| scaffold30546 |
16657 |
16682 |
+ |
(TATA)n |
Simple_repeat |
| scaffold30546 |
18109 |
18134 |
+ |
(GGAATT)n |
Simple_repeat |
| scaffold30546 |
18268 |
18285 |
+ |
(T)n |
Simple_repeat |
| scaffold30546 |
19712 |
19744 |
+ |
(T)n |
Simple_repeat |
| scaffold30546 |
20122 |
20147 |
+ |
(CTTTT)n |
Simple_repeat |
| scaffold30546 |
21541 |
21579 |
+ |
G-rich |
Low_complexity |
| scaffold30546 |
22047 |
22399 |
+ |
RS221 |
Unspecified |
| scaffold30546 |
27497 |
27532 |
+ |
A-rich |
Low_complexity |
| scaffold30546 |
29793 |
29812 |
+ |
(A)n |
Simple_repeat |
| scaffold30546 |
29909 |
30122 |
- |
RS139 |
Unspecified |
| scaffold30546 |
29944 |
30122 |
+ |
RS678 |
Unspecified |
| scaffold30546 |
30123 |
30515 |
+ |
RS309 |
Unspecified |
| scaffold30546 |
31590 |
31708 |
+ |
RS1149 |
Unspecified |
| scaffold30546 |
32416 |
32439 |
+ |
(T)n |
Simple_repeat |
| scaffold30546 |
33645 |
33702 |
- |
PL133 |
Unspecified |
| scaffold30546 |
33701 |
34008 |
- |
PL573 |
Unspecified |
| scaffold30546 |
34394 |
34723 |
+ |
RS15463 |
Unspecified |
| scaffold30546 |
34727 |
34983 |
+ |
RS185 |
Unspecified |
| scaffold30546 |
35574 |
35594 |
+ |
(T)n |
Simple_repeat |
| scaffold30546 |
35740 |
36004 |
+ |
(GGC)n |
Simple_repeat |
| scaffold30546 |
35922 |
36004 |
+ |
(GGC)n |
Simple_repeat |
| scaffold30546 |
36285 |
36370 |
+ |
(GCC)n |
Simple_repeat |
| scaffold30546 |
36390 |
36514 |
+ |
(AATTGAA)n |
Simple_repeat |
| scaffold30546 |
36797 |
36878 |
+ |
(TAATAAT)n |
Simple_repeat |
| scaffold30546 |
37019 |
37222 |
- |
RS611 |
Unspecified |
| scaffold30546 |
37019 |
37258 |
+ |
RS3118 |
Unspecified |
| scaffold30546 |
37259 |
37294 |
+ |
(A)n |
Simple_repeat |
| scaffold30546 |
37518 |
37546 |
+ |
(A)n |
Simple_repeat |
| scaffold30546 |
37716 |
37749 |
+ |
G-rich |
Low_complexity |
| scaffold30546 |
38807 |
38921 |
+ |
(ATTTAA)n |
Simple_repeat |
| scaffold30546 |
39204 |
39264 |
+ |
Gypsy-13_TA-I |
LTR/Gypsy |
| scaffold30546 |
39204 |
40119 |
+ |
Gypsy-13_TA-I |
LTR/Gypsy |
| scaffold30546 |
39254 |
40119 |
+ |
PL532 |
Unspecified |
| scaffold30546 |
40230 |
40297 |
+ |
(TAA)n |
Simple_repeat |
| scaffold30546 |
40319 |
40918 |
+ |
RS69 |
Unspecified |
| scaffold30546 |
40982 |
41017 |
+ |
(TTTGT)n |
Simple_repeat |
| scaffold30546 |
41281 |
41322 |
+ |
(TAA)n |
Simple_repeat |
| scaffold30546 |
41323 |
41334 |
+ |
(AAGTAAT)n |
Simple_repeat |
| scaffold30546 |
41349 |
41403 |
+ |
(ATTTTA)n |
Simple_repeat |
| scaffold30546 |
41409 |
42024 |
+ |
RS535 |
Unspecified |
| scaffold30546 |
42540 |
42591 |
+ |
(TATTCT)n |
Simple_repeat |
| scaffold30546 |
43265 |
43320 |
+ |
A-rich |
Low_complexity |
| scaffold30546 |
43556 |
43632 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold30546 |
43939 |
44002 |
+ |
A-rich |
Low_complexity |
| scaffold30546 |
44321 |
44436 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold30546 |
44641 |
44718 |
+ |
A-rich |
Low_complexity |
| scaffold30546 |
44908 |
44940 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold30546 |
45312 |
46121 |
+ |
RS13496 |
Unspecified |
| scaffold30546 |
46271 |
46325 |
+ |
(AAGACT)n |
Simple_repeat |
| scaffold30546 |
47359 |
47557 |
+ |
RS245 |
Unspecified |
| scaffold30546 |
47830 |
48240 |
- |
RS11758 |
Unspecified |
| scaffold30546 |
48373 |
48417 |
+ |
(AAT)n |
Simple_repeat |
| scaffold30546 |
49248 |
49273 |
+ |
(AG)n |
Simple_repeat |
| scaffold30546 |
51344 |
51413 |
- |
PL699 |
Unspecified |
| scaffold30546 |
51538 |
51640 |
+ |
G-rich |
Low_complexity |
| scaffold30546 |
52080 |
52141 |
+ |
Gypsy-13_SMo-LTR |
LTR/Gypsy |
| scaffold30546 |
52337 |
52410 |
- |
PL831 |
Unspecified |
| scaffold30546 |
52469 |
52506 |
+ |
(TTTCACC)n |
Simple_repeat |
| scaffold30546 |
53588 |
53661 |
+ |
(AATATTT)n |
Simple_repeat |
| scaffold30546 |
53980 |
54017 |
+ |
(AATAATT)n |
Simple_repeat |
| scaffold30546 |
54527 |
54555 |
+ |
A-rich |
Low_complexity |
| scaffold30546 |
54684 |
54742 |
+ |
A-rich |
Low_complexity |
| scaffold30546 |
56273 |
57248 |
+ |
PL465 |
Unspecified |
| scaffold30546 |
58058 |
58084 |
+ |
(T)n |
Simple_repeat |
| scaffold30546 |
58679 |
58742 |
- |
RS1041 |
Unspecified |
| scaffold30546 |
58936 |
58993 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold30546 |
59298 |
59331 |
+ |
(T)n |
Simple_repeat |
| scaffold30546 |
59501 |
59552 |
+ |
A-rich |
Low_complexity |
| scaffold30546 |
59602 |
59630 |
+ |
(ATGTAA)n |
Simple_repeat |
| scaffold30546 |
59998 |
60029 |
+ |
(A)n |
Simple_repeat |
| scaffold30546 |
60849 |
61146 |
- |
RS1401 |
Unspecified |
| scaffold30546 |
61215 |
61264 |
+ |
GA-rich |
Low_complexity |
| scaffold30546 |
61362 |
63347 |
- |
RS51 |
Unspecified |
| scaffold30546 |
62350 |
63614 |
- |
RS387 |
Unspecified |
| scaffold30546 |
63307 |
63825 |
- |
RS44 |
Unspecified |
| scaffold30546 |
63364 |
64636 |
- |
RS205 |
Unspecified |
| scaffold30546 |
63542 |
64910 |
- |
RS44 |
Unspecified |
| scaffold30546 |
63704 |
64806 |
- |
RS878 |
Unspecified |
| scaffold30546 |
64750 |
65105 |
- |
RS1001 |
Unspecified |
| scaffold30546 |
65620 |
65699 |
- |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold30546 |
66481 |
67239 |
- |
RS21 |
Unspecified |
| scaffold30546 |
67528 |
67570 |
+ |
(CTTGTA)n |
Simple_repeat |
| scaffold30546 |
67646 |
68191 |
- |
RS730 |
Unspecified |
| scaffold30546 |
68154 |
68795 |
- |
RS730 |
Unspecified |
| scaffold30546 |
68817 |
68889 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold30546 |
70330 |
70879 |
- |
RS21 |
Unspecified |
| scaffold30546 |
70437 |
71401 |
+ |
RS2700 |
Unspecified |
| scaffold30546 |
70662 |
71993 |
- |
RS51 |
Unspecified |
| scaffold30546 |
72354 |
73429 |
- |
RS51 |
Unspecified |
| scaffold30546 |
73764 |
73790 |
+ |
(TTG)n |
Simple_repeat |
| scaffold30546 |
73845 |
73890 |
+ |
(TAGTT)n |
Simple_repeat |
| scaffold30546 |
74280 |
74314 |
+ |
(TTTGTT)n |
Simple_repeat |
| scaffold30546 |
74426 |
74460 |
+ |
(T)n |
Simple_repeat |
| scaffold30546 |
75836 |
75867 |
+ |
(GAAATT)n |
Simple_repeat |
| scaffold30546 |
75951 |
76001 |
+ |
(CCA)n |
Simple_repeat |
| scaffold30546 |
76452 |
76488 |
+ |
(GGCGG)n |
Simple_repeat |
| scaffold30546 |
78613 |
78645 |
+ |
(AAACACG)n |
Simple_repeat |
| scaffold30546 |
79224 |
79372 |
- |
RS369 |
Unspecified |