scaffold31890 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold31890 |
1 |
480 |
- |
PL388 |
Unspecified |
| scaffold31890 |
148 |
437 |
+ |
RS6214 |
Unspecified |
| scaffold31890 |
2592 |
2993 |
- |
RS383 |
Unspecified |
| scaffold31890 |
3560 |
3585 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold31890 |
3865 |
4067 |
+ |
PL205 |
Unspecified |
| scaffold31890 |
4583 |
4634 |
+ |
(AACACG)n |
Simple_repeat |
| scaffold31890 |
5332 |
5499 |
+ |
RS782 |
Unspecified |
| scaffold31890 |
6158 |
6202 |
- |
RS16757 |
Unspecified |
| scaffold31890 |
6452 |
7752 |
- |
Copia-78_ST-I |
LTR/Copia |
| scaffold31890 |
7763 |
7931 |
- |
PL622 |
Unspecified |
| scaffold31890 |
8332 |
8377 |
- |
PL622 |
Unspecified |
| scaffold31890 |
8531 |
8580 |
+ |
(TAGATTATTC)n |
Simple_repeat |
| scaffold31890 |
8801 |
9476 |
- |
RS715 |
Unspecified |
| scaffold31890 |
9476 |
9525 |
+ |
(TAGATTATTC)n |
Simple_repeat |
| scaffold31890 |
9623 |
9655 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31890 |
10967 |
11201 |
- |
RS4635 |
Unspecified |
| scaffold31890 |
11220 |
11455 |
+ |
PL688 |
Unspecified |
| scaffold31890 |
11462 |
11562 |
+ |
GA-rich |
Low_complexity |
| scaffold31890 |
11565 |
11666 |
+ |
(CCAGCCA)n |
Simple_repeat |
| scaffold31890 |
11763 |
11810 |
+ |
(CGC)n |
Simple_repeat |
| scaffold31890 |
11865 |
11936 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold31890 |
12148 |
12291 |
+ |
RS4803 |
Unspecified |
| scaffold31890 |
12189 |
12636 |
+ |
RS4145 |
Unspecified |
| scaffold31890 |
12731 |
12890 |
+ |
RS4216 |
Unspecified |
| scaffold31890 |
13768 |
13794 |
+ |
(ATT)n |
Simple_repeat |
| scaffold31890 |
16369 |
16547 |
+ |
RS1546 |
Unspecified |
| scaffold31890 |
16733 |
16779 |
+ |
(TCCCC)n |
Simple_repeat |
| scaffold31890 |
17058 |
17074 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31890 |
17075 |
17114 |
+ |
A-rich |
Low_complexity |
| scaffold31890 |
18865 |
19031 |
- |
RS5245 |
Unspecified |
| scaffold31890 |
19031 |
19121 |
- |
PL177 |
Unspecified |
| scaffold31890 |
19034 |
19113 |
+ |
RS14487 |
Unspecified |
| scaffold31890 |
19614 |
19630 |
+ |
(TC)n |
Simple_repeat |
| scaffold31890 |
19630 |
19648 |
+ |
(T)n |
Simple_repeat |
| scaffold31890 |
20177 |
20207 |
+ |
(CTCTTT)n |
Simple_repeat |
| scaffold31890 |
22206 |
22223 |
+ |
(A)n |
Simple_repeat |
| scaffold31890 |
22864 |
22916 |
+ |
(CATGAAT)n |
Simple_repeat |
| scaffold31890 |
22990 |
23211 |
+ |
RS4 |
Unspecified |
| scaffold31890 |
24906 |
24931 |
+ |
(AT)n |
Simple_repeat |
| scaffold31890 |
25133 |
25168 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold31890 |
25297 |
25537 |
+ |
RS1095 |
Unspecified |
| scaffold31890 |
25436 |
25555 |
- |
RS4300 |
Unspecified |
| scaffold31890 |
25629 |
25703 |
- |
RS4475 |
Unspecified |
| scaffold31890 |
26042 |
26090 |
+ |
(CGGTCG)n |
Simple_repeat |
| scaffold31890 |
26160 |
26207 |
+ |
(AT)n |
Simple_repeat |
| scaffold31890 |
26351 |
26394 |
+ |
A-rich |
Low_complexity |
| scaffold31890 |
26643 |
26659 |
+ |
(A)n |
Simple_repeat |
| scaffold31890 |
27738 |
27787 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold31890 |
28504 |
28612 |
+ |
RS4475 |
Unspecified |
| scaffold31890 |
29870 |
30244 |
+ |
RS8 |
Unspecified |
| scaffold31890 |
31362 |
31378 |
+ |
(A)n |
Simple_repeat |
| scaffold31890 |
31811 |
32257 |
- |
PL542 |
Unspecified |
| scaffold31890 |
32363 |
32393 |
+ |
(T)n |
Simple_repeat |
| scaffold31890 |
33109 |
33153 |
+ |
(TAACGTT)n |
Simple_repeat |
| scaffold31890 |
33673 |
34131 |
+ |
PL352 |
Unspecified |
| scaffold31890 |
36519 |
36543 |
+ |
(CAAA)n |
Simple_repeat |
| scaffold31890 |
38266 |
38422 |
+ |
Copia-78_ST-I |
LTR/Copia |
| scaffold31890 |
39436 |
39708 |
+ |
Copia-78_ST-I |
LTR/Copia |
| scaffold31890 |
40009 |
40774 |
+ |
Copia-78_ST-I |
LTR/Copia |
| scaffold31890 |
41298 |
42801 |
+ |
Copia-78_ST-I |
LTR/Copia |
| scaffold31890 |
46569 |
46782 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold31890 |
47694 |
47846 |
+ |
RS992 |
Unspecified |
| scaffold31890 |
47716 |
47938 |
- |
RS5602 |
Unspecified |
| scaffold31890 |
47836 |
48439 |
- |
RS992 |
Unspecified |
| scaffold31890 |
48710 |
48740 |
+ |
(ATATG)n |
Simple_repeat |
| scaffold31890 |
48951 |
49580 |
- |
PL504 |
Unspecified |
| scaffold31890 |
50465 |
50537 |
- |
RS15302 |
Unspecified |
| scaffold31890 |
50771 |
50804 |
+ |
A-rich |
Low_complexity |
| scaffold31890 |
50999 |
51225 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold31890 |
51966 |
52566 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold31890 |
52808 |
52987 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold31890 |
53337 |
53475 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold31890 |
54853 |
54883 |
+ |
(A)n |
Simple_repeat |
| scaffold31890 |
55478 |
55593 |
+ |
RS5923 |
Unspecified |
| scaffold31890 |
55507 |
55642 |
- |
RS15302 |
Unspecified |
| scaffold31890 |
55876 |
55909 |
+ |
A-rich |
Low_complexity |
| scaffold31890 |
56104 |
56239 |
+ |
Gypsy-13_Mad-I |
LTR/Gypsy |
| scaffold31890 |
60628 |
60754 |
- |
RS79 |
Unspecified |
| scaffold31890 |
60628 |
60774 |
- |
RS9289 |
Unspecified |
| scaffold31890 |
61138 |
61155 |
+ |
(T)n |
Simple_repeat |
| scaffold31890 |
61841 |
61872 |
+ |
(T)n |
Simple_repeat |
| scaffold31890 |
62979 |
63078 |
+ |
RS1874 |
Unspecified |
| scaffold31890 |
63069 |
63277 |
+ |
RS86 |
Unspecified |
| scaffold31890 |
63263 |
63381 |
+ |
RS1874 |
Unspecified |
| scaffold31890 |
66233 |
66307 |
+ |
(ATTAAT)n |
Simple_repeat |
| scaffold31890 |
68339 |
68441 |
+ |
RS573 |
Unspecified |
| scaffold31890 |
68737 |
68756 |
+ |
(A)n |
Simple_repeat |
| scaffold31890 |
69020 |
69276 |
+ |
RS1 |
Unspecified |
| scaffold31890 |
70466 |
70492 |
+ |
(ATT)n |
Simple_repeat |
| scaffold31890 |
70529 |
70545 |
+ |
(A)n |
Simple_repeat |
| scaffold31890 |
71035 |
71143 |
+ |
RS16382 |
Unspecified |
| scaffold31890 |
72074 |
72110 |
+ |
(TTCACAT)n |
Simple_repeat |
| scaffold31890 |
72118 |
72210 |
+ |
(CAA)n |
Simple_repeat |
| scaffold31890 |
72520 |
72592 |
+ |
(TTATGT)n |
Simple_repeat |
| scaffold31890 |
72677 |
72788 |
- |
RS3706 |
Unspecified |
| scaffold31890 |
73040 |
73085 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold31890 |
73323 |
73359 |
+ |
A-rich |
Low_complexity |
| scaffold31890 |
73577 |
73682 |
- |
RS223 |
Unspecified |
| scaffold31890 |
74020 |
74118 |
+ |
A-rich |
Low_complexity |
| scaffold31890 |
74855 |
74877 |
+ |
(T)n |
Simple_repeat |
| scaffold31890 |
75151 |
75174 |
+ |
(A)n |
Simple_repeat |
| scaffold31890 |
75260 |
75305 |
+ |
RS18371 |
Unspecified |
| scaffold31890 |
75288 |
75458 |
+ |
RS17860 |
Unspecified |
| scaffold31890 |
75983 |
76057 |
- |
RS5271 |
Unspecified |
| scaffold31890 |
76004 |
76090 |
- |
RS1155 |
Unspecified |
| scaffold31890 |
76093 |
76352 |
- |
RS1155 |
Unspecified |
| scaffold31890 |
76362 |
76406 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold31890 |
77175 |
77329 |
+ |
(TAT)n |
Simple_repeat |
| scaffold31890 |
77175 |
77233 |
+ |
(TAT)n |
Simple_repeat |
| scaffold31890 |
77204 |
77329 |
- |
RS15138 |
Unspecified |
| scaffold31890 |
77232 |
77506 |
+ |
RS1 |
Unspecified |
| scaffold31890 |
77678 |
78926 |
+ |
RS673 |
Unspecified |
| scaffold31890 |
79457 |
79491 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold31890 |
79532 |
80067 |
- |
PL753 |
Unspecified |
| scaffold31890 |
79940 |
80114 |
+ |
(TTCA)n |
Simple_repeat |
| scaffold31890 |
80081 |
80114 |
+ |
(TTCA)n |
Simple_repeat |
| scaffold31890 |
80344 |
80779 |
+ |
PL3 |
Unspecified |
| scaffold31890 |
80770 |
80844 |
- |
RS2855 |
Unspecified |
| scaffold31890 |
86393 |
86420 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold31890 |
86421 |
86525 |
- |
RS13832 |
Unspecified |
| scaffold31890 |
86589 |
86664 |
+ |
RS4475 |
Unspecified |
| scaffold31890 |
86690 |
86748 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold31890 |
86773 |
86824 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold31890 |
89213 |
89280 |
+ |
(GTTATT)n |
Simple_repeat |
| scaffold31890 |
90580 |
91160 |
- |
PL490 |
Unspecified |
| scaffold31890 |
91233 |
91348 |
+ |
PL276 |
Unspecified |
| scaffold31890 |
91408 |
91522 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold31890 |
91622 |
91696 |
+ |
(GGT)n |
Simple_repeat |
| scaffold31890 |
91859 |
91920 |
+ |
(T)n |
Simple_repeat |
| scaffold31890 |
91950 |
92245 |
- |
RS7727 |
Unspecified |
| scaffold31890 |
92486 |
92525 |
+ |
(ATATTTT)n |
Simple_repeat |
| scaffold31890 |
93044 |
93288 |
+ |
RS4 |
Unspecified |
| scaffold31890 |
93357 |
93404 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31890 |
93562 |
93594 |
+ |
(TATT)n |
Simple_repeat |
| scaffold31890 |
93730 |
93852 |
+ |
RS2401 |
Unspecified |
| scaffold31890 |
94052 |
94788 |
+ |
PL328 |
Unspecified |
| scaffold31890 |
95125 |
95391 |
+ |
RS736 |
Unspecified |
| scaffold31890 |
95580 |
95596 |
+ |
(A)n |
Simple_repeat |
| scaffold31890 |
95681 |
96173 |
- |
PL271 |
Unspecified |
| scaffold31890 |
96228 |
96584 |
+ |
RS1188 |
Unspecified |
| scaffold31890 |
96582 |
96661 |
+ |
(CATACGT)n |
Simple_repeat |
| scaffold31890 |
96582 |
96977 |
+ |
(CATACGT)n |
Simple_repeat |
| scaffold31890 |
96647 |
96977 |
+ |
RS925 |
Unspecified |
| scaffold31890 |
97426 |
97447 |
+ |
(A)n |
Simple_repeat |
| scaffold31890 |
97467 |
97512 |
+ |
(T)n |
Simple_repeat |
| scaffold31890 |
97767 |
97793 |
+ |
(A)n |
Simple_repeat |
| scaffold31890 |
97811 |
98052 |
- |
RS1295 |
Unspecified |
| scaffold31890 |
98058 |
98316 |
- |
RS26 |
Unspecified |
| scaffold31890 |
101797 |
101963 |
- |
PL469 |
Unspecified |
| scaffold31890 |
102010 |
102087 |
- |
PL469 |
Unspecified |
| scaffold31890 |
102236 |
102303 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold31890 |
102582 |
102622 |
+ |
(TTTCATA)n |
Simple_repeat |
| scaffold31890 |
102833 |
102871 |
+ |
(AATTAT)n |
Simple_repeat |
| scaffold31890 |
103450 |
103524 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31890 |
103692 |
104135 |
+ |
PL580 |
Unspecified |
| scaffold31890 |
105517 |
105663 |
+ |
RS581 |
Unspecified |
| scaffold31890 |
106372 |
106401 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold31890 |
109412 |
109462 |
+ |
RS13658 |
Unspecified |
| scaffold31890 |
109444 |
109897 |
+ |
RS13658 |
Unspecified |
| scaffold31890 |
109739 |
110064 |
+ |
RS2637 |
Unspecified |
| scaffold31890 |
110369 |
110409 |
- |
Copia-7_TA-I |
LTR/Copia |
| scaffold31890 |
110825 |
111115 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold31890 |
112386 |
112973 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold31890 |
112636 |
112892 |
- |
L1-1_PTr |
LINE/L1 |
| scaffold31890 |
113541 |
113649 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold31890 |
114754 |
115132 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold31890 |
115328 |
115366 |
+ |
A-rich |
Low_complexity |
| scaffold31890 |
116740 |
116787 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold31890 |
117706 |
117746 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold31890 |
117800 |
117839 |
+ |
A-rich |
Low_complexity |
| scaffold31890 |
118545 |
118618 |
+ |
A-rich |
Low_complexity |
| scaffold31890 |
121020 |
121088 |
+ |
Gypsy-9_Mad-I |
LTR/Gypsy |
| scaffold31890 |
121481 |
122050 |
+ |
RS1455 |
Unspecified |
| scaffold31890 |
122108 |
122605 |
+ |
RS12047 |
Unspecified |
| scaffold31890 |
123241 |
123509 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold31890 |
123810 |
124075 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold31890 |
124497 |
124533 |
+ |
(ACACAT)n |
Simple_repeat |
| scaffold31890 |
125018 |
125226 |
+ |
RS2778 |
Unspecified |
| scaffold31890 |
125374 |
125402 |
+ |
(ATT)n |
Simple_repeat |
| scaffold31890 |
135067 |
135118 |
+ |
(GCC)n |
Simple_repeat |
| scaffold31890 |
135259 |
135349 |
+ |
(CCG)n |
Simple_repeat |
| scaffold31890 |
135406 |
135432 |
+ |
(A)n |
Simple_repeat |
| scaffold31890 |
135524 |
135560 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold31890 |
135615 |
135660 |
+ |
(AC)n |
Simple_repeat |
| scaffold31890 |
135660 |
135703 |
+ |
GA-rich |
Low_complexity |
| scaffold31890 |
135780 |
135798 |
+ |
(TTA)n |
Simple_repeat |
| scaffold31890 |
135799 |
135833 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold31890 |
135834 |
135883 |
+ |
(TTA)n |
Simple_repeat |
| scaffold31890 |
136181 |
136333 |
- |
PL413 |
Unspecified |
| scaffold31890 |
136458 |
136591 |
- |
RS748 |
Unspecified |
| scaffold31890 |
136752 |
136788 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31890 |
137073 |
137392 |
- |
RS748 |
Unspecified |
| scaffold31890 |
137548 |
137594 |
+ |
(TTTTAAT)n |
Simple_repeat |
| scaffold31890 |
137810 |
138009 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31890 |
138010 |
138048 |
+ |
(GAA)n |
Simple_repeat |
| scaffold31890 |
139235 |
139267 |
+ |
(TGTTAA)n |
Simple_repeat |
| scaffold31890 |
139838 |
139873 |
+ |
(ATCTT)n |
Simple_repeat |
| scaffold31890 |
141444 |
141467 |
+ |
(GTT)n |
Simple_repeat |
| scaffold31890 |
141779 |
142016 |
- |
RS234 |
Unspecified |
| scaffold31890 |
142013 |
142053 |
+ |
(T)n |
Simple_repeat |
| scaffold31890 |
142538 |
142594 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold31890 |
142902 |
142924 |
+ |
(T)n |
Simple_repeat |
| scaffold31890 |
143715 |
143752 |
+ |
A-rich |
Low_complexity |
| scaffold31890 |
144146 |
144459 |
+ |
PL319 |
Unspecified |
| scaffold31890 |
144589 |
144605 |
+ |
(A)n |
Simple_repeat |