scaffold3294 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3294 |
22 |
129 |
- |
Copia-86_VV-I |
LTR/Copia |
| scaffold3294 |
534 |
594 |
+ |
A-rich |
Low_complexity |
| scaffold3294 |
878 |
918 |
+ |
(T)n |
Simple_repeat |
| scaffold3294 |
939 |
1010 |
+ |
A-rich |
Low_complexity |
| scaffold3294 |
1117 |
1161 |
- |
Copia-86_VV-I |
LTR/Copia |
| scaffold3294 |
3342 |
3395 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold3294 |
3516 |
3551 |
+ |
(T)n |
Simple_repeat |
| scaffold3294 |
3974 |
4061 |
+ |
G-rich |
Low_complexity |
| scaffold3294 |
4247 |
4292 |
+ |
(ATTATA)n |
Simple_repeat |
| scaffold3294 |
4548 |
4578 |
- |
RS528 |
Unspecified |
| scaffold3294 |
4577 |
4602 |
+ |
(T)n |
Simple_repeat |
| scaffold3294 |
4602 |
4752 |
+ |
PL209 |
Unspecified |
| scaffold3294 |
5346 |
5397 |
+ |
(TTTTCTA)n |
Simple_repeat |
| scaffold3294 |
5973 |
6023 |
+ |
(TTCAT)n |
Simple_repeat |
| scaffold3294 |
6152 |
6359 |
+ |
RS6436 |
Unspecified |
| scaffold3294 |
7649 |
7903 |
+ |
RS264 |
Unspecified |
| scaffold3294 |
7900 |
9103 |
- |
RS232 |
Unspecified |
| scaffold3294 |
9243 |
9365 |
+ |
RS15733 |
Unspecified |
| scaffold3294 |
9641 |
9787 |
+ |
RS8587 |
Unspecified |
| scaffold3294 |
9932 |
9983 |
+ |
(TTA)n |
Simple_repeat |
| scaffold3294 |
10127 |
10144 |
+ |
(T)n |
Simple_repeat |
| scaffold3294 |
10252 |
10338 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold3294 |
10339 |
10386 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3294 |
10387 |
10456 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold3294 |
11519 |
11546 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold3294 |
12560 |
13336 |
- |
L1-1_GM |
LINE/L1 |
| scaffold3294 |
15755 |
15871 |
+ |
RS14491 |
Unspecified |
| scaffold3294 |
15770 |
15908 |
+ |
RS17890 |
Unspecified |
| scaffold3294 |
22480 |
22732 |
+ |
RS2064 |
Unspecified |
| scaffold3294 |
22743 |
22772 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold3294 |
23391 |
23478 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3294 |
23543 |
23574 |
+ |
(TCTTT)n |
Simple_repeat |
| scaffold3294 |
23872 |
24076 |
- |
Copia-67_GM-I |
LTR/Copia |
| scaffold3294 |
24155 |
25009 |
- |
Copia-67_GM-I |
LTR/Copia |
| scaffold3294 |
25010 |
25336 |
- |
PL208 |
Unspecified |
| scaffold3294 |
26450 |
26699 |
- |
PL670 |
Unspecified |
| scaffold3294 |
26700 |
27077 |
- |
Copia-67_GM-I |
LTR/Copia |
| scaffold3294 |
26700 |
27909 |
- |
Copia-67_GM-I |
LTR/Copia |
| scaffold3294 |
27038 |
27909 |
- |
RS351 |
Unspecified |
| scaffold3294 |
28468 |
28949 |
+ |
PL600 |
Unspecified |
| scaffold3294 |
28950 |
29771 |
- |
Copia-67_GM-I |
LTR/Copia |
| scaffold3294 |
29827 |
31075 |
- |
Copia-86_ST-I |
LTR/Copia |
| scaffold3294 |
31074 |
31157 |
- |
Copia-86_ST-I |
LTR/Copia |
| scaffold3294 |
31553 |
31853 |
- |
RS96 |
Unspecified |
| scaffold3294 |
32148 |
32181 |
+ |
A-rich |
Low_complexity |
| scaffold3294 |
32393 |
32428 |
+ |
A-rich |
Low_complexity |
| scaffold3294 |
32667 |
32701 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3294 |
32766 |
32802 |
+ |
(TCTTT)n |
Simple_repeat |
| scaffold3294 |
33741 |
33800 |
+ |
(TGATAT)n |
Simple_repeat |
| scaffold3294 |
34532 |
35090 |
- |
RS72 |
Unspecified |
| scaffold3294 |
35212 |
35238 |
+ |
(T)n |
Simple_repeat |
| scaffold3294 |
35614 |
35635 |
+ |
(T)n |
Simple_repeat |
| scaffold3294 |
35677 |
35756 |
- |
RS6506 |
Unspecified |
| scaffold3294 |
37132 |
37158 |
+ |
(TGA)n |
Simple_repeat |
| scaffold3294 |
41123 |
41163 |
+ |
GA-rich |
Low_complexity |
| scaffold3294 |
41340 |
41380 |
+ |
(TATCATA)n |
Simple_repeat |
| scaffold3294 |
41380 |
41470 |
- |
RS11189 |
Unspecified |
| scaffold3294 |
41469 |
41735 |
+ |
RS356 |
Unspecified |
| scaffold3294 |
41922 |
42026 |
+ |
RS4475 |
Unspecified |
| scaffold3294 |
41922 |
42014 |
- |
RS16382 |
Unspecified |
| scaffold3294 |
42397 |
42432 |
+ |
(A)n |
Simple_repeat |
| scaffold3294 |
42617 |
42664 |
+ |
A-rich |
Low_complexity |
| scaffold3294 |
42861 |
43009 |
+ |
RS2902 |
Unspecified |
| scaffold3294 |
43524 |
43602 |
+ |
RS17927 |
Unspecified |
| scaffold3294 |
43605 |
43670 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3294 |
44779 |
45713 |
- |
LINE1I_MT |
LINE/L1 |
| scaffold3294 |
47955 |
47999 |
+ |
(T)n |
Simple_repeat |
| scaffold3294 |
48013 |
48046 |
+ |
(T)n |
Simple_repeat |
| scaffold3294 |
48067 |
48119 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3294 |
48337 |
48418 |
+ |
RS306 |
Unspecified |
| scaffold3294 |
48777 |
48981 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3294 |
48891 |
48981 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3294 |
48982 |
49039 |
+ |
(TTA)n |
Simple_repeat |
| scaffold3294 |
49036 |
49144 |
- |
PL400 |
Unspecified |
| scaffold3294 |
49039 |
49187 |
+ |
RS5314 |
Unspecified |
| scaffold3294 |
49039 |
49135 |
- |
PL577 |
Unspecified |
| scaffold3294 |
49080 |
49473 |
- |
RS1010 |
Unspecified |
| scaffold3294 |
49865 |
50785 |
+ |
RS649 |
Unspecified |
| scaffold3294 |
52123 |
52432 |
- |
RIRE1_I-int |
LTR/Copia |
| scaffold3294 |
54788 |
54812 |
+ |
(A)n |
Simple_repeat |
| scaffold3294 |
55443 |
55479 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold3294 |
58317 |
58353 |
+ |
(ATG)n |
Simple_repeat |
| scaffold3294 |
58731 |
59313 |
+ |
PL268 |
Unspecified |
| scaffold3294 |
59485 |
59933 |
- |
RS458 |
Unspecified |
| scaffold3294 |
60349 |
60715 |
+ |
PL859 |
Unspecified |
| scaffold3294 |
61276 |
61553 |
+ |
RS595 |
Unspecified |
| scaffold3294 |
61330 |
61704 |
+ |
RS1818 |
Unspecified |
| scaffold3294 |
61865 |
62056 |
+ |
RS10972 |
Unspecified |
| scaffold3294 |
62176 |
62416 |
- |
RS4 |
Unspecified |
| scaffold3294 |
62448 |
62489 |
+ |
A-rich |
Low_complexity |
| scaffold3294 |
62814 |
62836 |
+ |
(CACT)n |
Simple_repeat |
| scaffold3294 |
62837 |
62855 |
+ |
(CT)n |
Simple_repeat |
| scaffold3294 |
63111 |
63142 |
+ |
(T)n |
Simple_repeat |
| scaffold3294 |
63275 |
63284 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold3294 |
63285 |
63353 |
+ |
(T)n |
Simple_repeat |
| scaffold3294 |
64224 |
64690 |
- |
PL582 |
Unspecified |
| scaffold3294 |
64998 |
65250 |
+ |
PL228 |
Unspecified |
| scaffold3294 |
65260 |
65483 |
+ |
RS1639 |
Unspecified |
| scaffold3294 |
66014 |
66187 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold3294 |
66178 |
66727 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold3294 |
66978 |
67383 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold3294 |
67394 |
68026 |
+ |
PL849 |
Unspecified |
| scaffold3294 |
67394 |
68128 |
+ |
RS480 |
Unspecified |
| scaffold3294 |
67850 |
68176 |
- |
RS3266 |
Unspecified |
| scaffold3294 |
68635 |
69910 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold3294 |
68743 |
69910 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold3294 |
69906 |
70129 |
+ |
RS1639 |
Unspecified |
| scaffold3294 |
70266 |
70414 |
+ |
PL228 |
Unspecified |
| scaffold3294 |
70545 |
70590 |
+ |
(AATTTAT)n |
Simple_repeat |
| scaffold3294 |
71715 |
71812 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3294 |
72667 |
72688 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3294 |
73734 |
73869 |
- |
RS7852 |
Unspecified |
| scaffold3294 |
73855 |
73975 |
+ |
RS13077 |
Unspecified |
| scaffold3294 |
75661 |
75899 |
+ |
RS14098 |
Unspecified |
| scaffold3294 |
76210 |
76252 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold3294 |
78259 |
78470 |
+ |
(CTG)n |
Simple_repeat |
| scaffold3294 |
79864 |
80131 |
+ |
RS4289 |
Unspecified |
| scaffold3294 |
80522 |
80634 |
- |
RS2276 |
Unspecified |
| scaffold3294 |
80630 |
80928 |
- |
RS2276 |
Unspecified |
| scaffold3294 |
80968 |
81194 |
+ |
(CAATTA)n |
Simple_repeat |
| scaffold3294 |
81136 |
81194 |
+ |
(CAATTA)n |
Simple_repeat |
| scaffold3294 |
81872 |
81931 |
+ |
HAT-N16_Mad |
DNA/hAT-Tip100 |
| scaffold3294 |
82156 |
82182 |
+ |
(TAAAA)n |
Simple_repeat |
| scaffold3294 |
82541 |
82632 |
+ |
(TCTG)n |
Simple_repeat |
| scaffold3294 |
82807 |
82842 |
+ |
(ATCT)n |
Simple_repeat |
| scaffold3294 |
82915 |
83044 |
- |
RS1599 |
Unspecified |
| scaffold3294 |
83989 |
84005 |
+ |
(GAA)n |
Simple_repeat |
| scaffold3294 |
84852 |
84910 |
+ |
(GT)n |
Simple_repeat |
| scaffold3294 |
85948 |
86000 |
+ |
(AATATT)n |
Simple_repeat |
| scaffold3294 |
87791 |
88509 |
+ |
PL209 |
Unspecified |
| scaffold3294 |
89139 |
89268 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold3294 |
89693 |
89725 |
+ |
(AATT)n |
Simple_repeat |
| scaffold3294 |
89955 |
90088 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3294 |
90093 |
90151 |
+ |
G-rich |
Low_complexity |
| scaffold3294 |
90231 |
90364 |
+ |
RS9351 |
Unspecified |
| scaffold3294 |
90323 |
90371 |
+ |
PL375 |
Unspecified |
| scaffold3294 |
90485 |
90526 |
+ |
PL375 |
Unspecified |
| scaffold3294 |
90716 |
90789 |
+ |
(TT)n |
Simple_repeat |
| scaffold3294 |
90803 |
90923 |
+ |
(GGCGGT)n |
Simple_repeat |
| scaffold3294 |
91055 |
91115 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3294 |
91097 |
91161 |
+ |
(ATTAT)n |
Simple_repeat |
| scaffold3294 |
91193 |
91235 |
+ |
A-rich |
Low_complexity |
| scaffold3294 |
91269 |
91446 |
- |
RS325 |
Unspecified |
| scaffold3294 |
91448 |
91560 |
+ |
RS8312 |
Unspecified |
| scaffold3294 |
91526 |
91696 |
- |
RS439 |
Unspecified |
| scaffold3294 |
91545 |
91677 |
+ |
RS8312 |
Unspecified |
| scaffold3294 |
91596 |
91811 |
+ |
A-rich |
Low_complexity |
| scaffold3294 |
91772 |
91811 |
+ |
A-rich |
Low_complexity |
| scaffold3294 |
92380 |
92854 |
+ |
PL276 |
Unspecified |
| scaffold3294 |
93622 |
93645 |
+ |
(A)n |
Simple_repeat |
| scaffold3294 |
94652 |
94707 |
- |
RS47 |
Unspecified |
| scaffold3294 |
94703 |
94779 |
- |
RS47 |
Unspecified |
| scaffold3294 |
95150 |
95265 |
+ |
(T)n |
Simple_repeat |
| scaffold3294 |
96365 |
96855 |
- |
PL501 |
Unspecified |
| scaffold3294 |
98423 |
98446 |
- |
ENSPM2_VV |
DNA/CMC-EnSpm |
| scaffold3294 |
98447 |
98510 |
- |
DNA3-8_STu |
DNA |
| scaffold3294 |
98854 |
98969 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3294 |
99212 |
99257 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3294 |
99398 |
99463 |
+ |
(ATATTTA)n |
Simple_repeat |
| scaffold3294 |
100768 |
100825 |
+ |
A-rich |
Low_complexity |
| scaffold3294 |
100842 |
100945 |
- |
RS12254 |
Unspecified |
| scaffold3294 |
101687 |
101873 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3294 |
101822 |
101873 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3294 |
103163 |
103179 |
+ |
(AC)n |
Simple_repeat |
| scaffold3294 |
103488 |
103543 |
+ |
(ATCATT)n |
Simple_repeat |
| scaffold3294 |
104112 |
104143 |
+ |
(TAAA)n |
Simple_repeat |
| scaffold3294 |
104593 |
104664 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3294 |
104990 |
105043 |
+ |
A-rich |
Low_complexity |
| scaffold3294 |
105504 |
105710 |
- |
RS13085 |
Unspecified |
| scaffold3294 |
105721 |
105896 |
- |
RS356 |
Unspecified |
| scaffold3294 |
105986 |
106077 |
- |
RS356 |
Unspecified |
| scaffold3294 |
106577 |
106690 |
+ |
(TCT)n |
Simple_repeat |
| scaffold3294 |
107560 |
107610 |
+ |
(TAAA)n |
Simple_repeat |
| scaffold3294 |
108532 |
110762 |
+ |
Copia-66_GM-I |
LTR/Copia |
| scaffold3294 |
110754 |
110805 |
- |
Copia17-VV_I-int |
LTR/Copia |
| scaffold3294 |
110865 |
110885 |
+ |
(A)n |
Simple_repeat |
| scaffold3294 |
110901 |
111009 |
+ |
(CGC)n |
Simple_repeat |
| scaffold3294 |
111131 |
111654 |
+ |
EnSpm6_SB |
DNA/CMC-EnSpm |
| scaffold3294 |
112086 |
112221 |
+ |
EnSpm-1_GM |
DNA/CMC-EnSpm |
| scaffold3294 |
112930 |
113129 |
+ |
EnSpm-11_ZM |
DNA/CMC-EnSpm |
| scaffold3294 |
113207 |
113757 |
+ |
EnSpm-1_EPa |
DNA/CMC-EnSpm |
| scaffold3294 |
113843 |
113889 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold3294 |
114101 |
114194 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold3294 |
114357 |
114385 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold3294 |
115459 |
115615 |
+ |
RS1136 |
Unspecified |
| scaffold3294 |
117432 |
117633 |
+ |
ATENSPM1A |
DNA/CMC-EnSpm |