scaffold32979 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold32979 |
357 |
591 |
- |
RS1401 |
Unspecified |
| scaffold32979 |
593 |
879 |
- |
RS1401 |
Unspecified |
| scaffold32979 |
897 |
967 |
- |
RS7417 |
Unspecified |
| scaffold32979 |
969 |
1017 |
+ |
GA-rich |
Low_complexity |
| scaffold32979 |
1090 |
1246 |
+ |
RS361 |
Unspecified |
| scaffold32979 |
1220 |
1323 |
- |
RS212 |
Unspecified |
| scaffold32979 |
2129 |
2174 |
+ |
(CA)n |
Simple_repeat |
| scaffold32979 |
2174 |
2191 |
+ |
(A)n |
Simple_repeat |
| scaffold32979 |
2790 |
3179 |
- |
PL470 |
Unspecified |
| scaffold32979 |
4427 |
5194 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold32979 |
7734 |
7781 |
+ |
PL470 |
Unspecified |
| scaffold32979 |
7822 |
7939 |
+ |
PL470 |
Unspecified |
| scaffold32979 |
8058 |
8145 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold32979 |
8635 |
8949 |
+ |
RS6506 |
Unspecified |
| scaffold32979 |
9329 |
9346 |
+ |
(T)n |
Simple_repeat |
| scaffold32979 |
9600 |
9703 |
- |
RS972 |
Unspecified |
| scaffold32979 |
12888 |
13517 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold32979 |
13469 |
13493 |
+ |
(TAA)n |
Simple_repeat |
| scaffold32979 |
13799 |
14173 |
+ |
COP3_I_MT-int |
LTR/Copia |
| scaffold32979 |
15305 |
15853 |
+ |
Copia-30-I_VV |
LTR/Copia |
| scaffold32979 |
16374 |
17649 |
+ |
Copia-30-I_VV |
LTR/Copia |
| scaffold32979 |
18033 |
19605 |
+ |
Copia-30-I_VV |
LTR/Copia |
| scaffold32979 |
19924 |
19974 |
+ |
(GTATAAT)n |
Simple_repeat |
| scaffold32979 |
20147 |
20369 |
+ |
PL727 |
Unspecified |
| scaffold32979 |
22226 |
22356 |
+ |
RS997 |
Unspecified |
| scaffold32979 |
22948 |
23010 |
+ |
(TAATA)n |
Simple_repeat |
| scaffold32979 |
24206 |
24258 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
25397 |
25444 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold32979 |
25670 |
25719 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold32979 |
25912 |
26051 |
- |
RS7851 |
Unspecified |
| scaffold32979 |
26075 |
26156 |
+ |
(TTC)n |
Simple_repeat |
| scaffold32979 |
27647 |
27775 |
- |
RS156 |
Unspecified |
| scaffold32979 |
28963 |
29063 |
- |
PL9 |
Unspecified |
| scaffold32979 |
29133 |
29160 |
+ |
(T)n |
Simple_repeat |
| scaffold32979 |
29511 |
29558 |
+ |
(TAATAT)n |
Simple_repeat |
| scaffold32979 |
29603 |
29659 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold32979 |
30377 |
30752 |
- |
RS347 |
Unspecified |
| scaffold32979 |
30774 |
30855 |
- |
RS347 |
Unspecified |
| scaffold32979 |
30840 |
31033 |
- |
RS347 |
Unspecified |
| scaffold32979 |
31532 |
31608 |
- |
RS347 |
Unspecified |
| scaffold32979 |
35207 |
35240 |
+ |
(TCTAA)n |
Simple_repeat |
| scaffold32979 |
35399 |
35616 |
- |
RS1294 |
Unspecified |
| scaffold32979 |
36600 |
36678 |
- |
RS17105 |
Unspecified |
| scaffold32979 |
36670 |
37146 |
- |
RS1462 |
Unspecified |
| scaffold32979 |
37634 |
37668 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
37894 |
37976 |
- |
RS6498 |
Unspecified |
| scaffold32979 |
37979 |
38188 |
- |
PL255 |
Unspecified |
| scaffold32979 |
38814 |
38867 |
- |
RS6498 |
Unspecified |
| scaffold32979 |
39887 |
41511 |
- |
PL124 |
Unspecified |
| scaffold32979 |
41551 |
41606 |
+ |
(ATATTT)n |
Simple_repeat |
| scaffold32979 |
42287 |
42321 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
42949 |
43118 |
+ |
(AGAT)n |
Simple_repeat |
| scaffold32979 |
43084 |
43118 |
+ |
(AGAT)n |
Simple_repeat |
| scaffold32979 |
43410 |
43474 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold32979 |
43476 |
43503 |
+ |
(GTA)n |
Simple_repeat |
| scaffold32979 |
43708 |
43763 |
+ |
(ATGATA)n |
Simple_repeat |
| scaffold32979 |
46136 |
46419 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold32979 |
46955 |
47569 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold32979 |
47315 |
47554 |
+ |
LINE1C_MT |
LINE/L1 |
| scaffold32979 |
47733 |
47780 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
48359 |
48393 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
48476 |
48513 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold32979 |
49453 |
49478 |
+ |
(T)n |
Simple_repeat |
| scaffold32979 |
50446 |
50488 |
- |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold32979 |
50829 |
51029 |
- |
RS5009 |
Unspecified |
| scaffold32979 |
51036 |
52221 |
- |
RS1867 |
Unspecified |
| scaffold32979 |
52390 |
52439 |
+ |
(CTAAA)n |
Simple_repeat |
| scaffold32979 |
52702 |
52771 |
+ |
(CAAT)n |
Simple_repeat |
| scaffold32979 |
52991 |
53048 |
+ |
(AACCTAA)n |
Simple_repeat |
| scaffold32979 |
53138 |
53173 |
+ |
(CGGC)n |
Simple_repeat |
| scaffold32979 |
54587 |
54811 |
- |
RS10200 |
Unspecified |
| scaffold32979 |
55165 |
55198 |
+ |
(TTTTCTT)n |
Simple_repeat |
| scaffold32979 |
55499 |
55666 |
- |
Copia-92_ST-I |
LTR/Copia |
| scaffold32979 |
55802 |
55973 |
+ |
RS2727 |
Unspecified |
| scaffold32979 |
55975 |
56041 |
+ |
(ACATATA)n |
Simple_repeat |
| scaffold32979 |
56075 |
56193 |
- |
Copia-92_ST-I |
LTR/Copia |
| scaffold32979 |
56202 |
57407 |
- |
Copia-92_ST-I |
LTR/Copia |
| scaffold32979 |
60556 |
60594 |
+ |
(ATA)n |
Simple_repeat |
| scaffold32979 |
61100 |
61167 |
+ |
PL803 |
Unspecified |
| scaffold32979 |
62204 |
62396 |
- |
RS14768 |
Unspecified |
| scaffold32979 |
62528 |
62547 |
+ |
(T)n |
Simple_repeat |
| scaffold32979 |
62776 |
62806 |
+ |
(TTAATA)n |
Simple_repeat |
| scaffold32979 |
63067 |
63129 |
- |
PL814 |
Unspecified |
| scaffold32979 |
63067 |
63140 |
- |
RS320 |
Unspecified |
| scaffold32979 |
63119 |
63815 |
- |
RS269 |
Unspecified |
| scaffold32979 |
63124 |
63712 |
- |
RS5950 |
Unspecified |
| scaffold32979 |
64384 |
65030 |
- |
PL276 |
Unspecified |
| scaffold32979 |
65458 |
65557 |
+ |
RS185 |
Unspecified |
| scaffold32979 |
65554 |
66087 |
- |
PL592 |
Unspecified |
| scaffold32979 |
66078 |
66248 |
+ |
RS185 |
Unspecified |
| scaffold32979 |
66504 |
66532 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold32979 |
67233 |
67282 |
+ |
(CCGGC)n |
Simple_repeat |
| scaffold32979 |
68772 |
68820 |
- |
PL803 |
Unspecified |
| scaffold32979 |
68776 |
68836 |
- |
PL276 |
Unspecified |
| scaffold32979 |
69442 |
70007 |
- |
RS767 |
Unspecified |
| scaffold32979 |
69602 |
70291 |
+ |
RS1831 |
Unspecified |
| scaffold32979 |
70317 |
70677 |
- |
RS8476 |
Unspecified |
| scaffold32979 |
70736 |
70772 |
+ |
(GTCAGAG)n |
Simple_repeat |
| scaffold32979 |
70982 |
71800 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold32979 |
71802 |
72290 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold32979 |
71978 |
72090 |
+ |
MUDSOLT1 |
DNA/MULE-MuDR |
| scaffold32979 |
72724 |
73380 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold32979 |
73390 |
73734 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold32979 |
74324 |
74588 |
- |
RS356 |
Unspecified |
| scaffold32979 |
74594 |
74655 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold32979 |
75758 |
75788 |
+ |
(TATTAA)n |
Simple_repeat |
| scaffold32979 |
76167 |
76430 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold32979 |
76464 |
76604 |
- |
RS4329 |
Unspecified |
| scaffold32979 |
77394 |
77457 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
77630 |
77651 |
+ |
(A)n |
Simple_repeat |
| scaffold32979 |
77856 |
77896 |
+ |
(A)n |
Simple_repeat |
| scaffold32979 |
77976 |
78296 |
- |
PL886 |
Unspecified |
| scaffold32979 |
78517 |
78546 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
79585 |
79622 |
+ |
(A)n |
Simple_repeat |
| scaffold32979 |
80892 |
81003 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold32979 |
81358 |
82743 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold32979 |
81709 |
82481 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold32979 |
82643 |
82736 |
- |
EnSpm-9_STu |
DNA/CMC-EnSpm |
| scaffold32979 |
84238 |
84396 |
+ |
RS126 |
Unspecified |
| scaffold32979 |
84552 |
84584 |
+ |
(CGCCCC)n |
Simple_repeat |
| scaffold32979 |
84923 |
84976 |
+ |
G-rich |
Low_complexity |
| scaffold32979 |
85041 |
85091 |
+ |
(GGT)n |
Simple_repeat |
| scaffold32979 |
86980 |
87017 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
89421 |
89460 |
+ |
(TGAAC)n |
Simple_repeat |
| scaffold32979 |
89784 |
89808 |
+ |
(ATTAT)n |
Simple_repeat |
| scaffold32979 |
90248 |
90292 |
+ |
(T)n |
Simple_repeat |
| scaffold32979 |
90702 |
90734 |
+ |
(ATATAA)n |
Simple_repeat |
| scaffold32979 |
90735 |
90754 |
+ |
(ATAT)n |
Simple_repeat |
| scaffold32979 |
91282 |
91309 |
+ |
(AATTG)n |
Simple_repeat |
| scaffold32979 |
94063 |
94095 |
+ |
(AAAGAA)n |
Simple_repeat |
| scaffold32979 |
96737 |
96971 |
- |
Copia-4_SL-LTR |
LTR/Copia |
| scaffold32979 |
96950 |
97162 |
+ |
PL131 |
Unspecified |
| scaffold32979 |
99330 |
99860 |
- |
PL473 |
Unspecified |
| scaffold32979 |
99893 |
100597 |
- |
PL363 |
Unspecified |
| scaffold32979 |
101171 |
101432 |
+ |
RS82 |
Unspecified |
| scaffold32979 |
102577 |
102603 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
102822 |
102859 |
+ |
(ATCTAT)n |
Simple_repeat |
| scaffold32979 |
103034 |
103058 |
+ |
(TTCA)n |
Simple_repeat |
| scaffold32979 |
103141 |
103318 |
- |
RS2414 |
Unspecified |
| scaffold32979 |
104089 |
104131 |
+ |
(TAATATA)n |
Simple_repeat |
| scaffold32979 |
104307 |
104340 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
106349 |
106390 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold32979 |
107007 |
107046 |
+ |
(T)n |
Simple_repeat |
| scaffold32979 |
107406 |
107870 |
- |
PL78 |
Unspecified |
| scaffold32979 |
107503 |
107941 |
- |
RS78 |
Unspecified |
| scaffold32979 |
112210 |
112352 |
- |
RS5295 |
Unspecified |
| scaffold32979 |
113475 |
113530 |
+ |
(GT)n |
Simple_repeat |
| scaffold32979 |
114475 |
115299 |
+ |
Copia-67_GM-I |
LTR/Copia |
| scaffold32979 |
115308 |
115561 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold32979 |
115581 |
118628 |
+ |
Copia-67_GM-I |
LTR/Copia |
| scaffold32979 |
118669 |
118931 |
+ |
RS240 |
Unspecified |
| scaffold32979 |
119039 |
119154 |
+ |
Copia-67_GM-I |
LTR/Copia |
| scaffold32979 |
119205 |
119753 |
- |
PL673 |
Unspecified |
| scaffold32979 |
119991 |
120040 |
- |
PL673 |
Unspecified |
| scaffold32979 |
120149 |
120185 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold32979 |
120614 |
120657 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
121024 |
121412 |
+ |
RS29 |
Unspecified |
| scaffold32979 |
122139 |
122331 |
+ |
RS248 |
Unspecified |
| scaffold32979 |
123772 |
123805 |
+ |
(TCTT)n |
Simple_repeat |
| scaffold32979 |
123939 |
123956 |
+ |
(T)n |
Simple_repeat |
| scaffold32979 |
124098 |
124152 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold32979 |
124153 |
124230 |
+ |
(AATTATT)n |
Simple_repeat |
| scaffold32979 |
124519 |
124559 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
124793 |
125134 |
- |
RS600 |
Unspecified |
| scaffold32979 |
125204 |
125242 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
126112 |
126149 |
+ |
(AT)n |
Simple_repeat |
| scaffold32979 |
126303 |
126488 |
+ |
(TAA)n |
Simple_repeat |
| scaffold32979 |
126542 |
126621 |
- |
RS874 |
Unspecified |
| scaffold32979 |
126668 |
126693 |
+ |
(AAT)n |
Simple_repeat |
| scaffold32979 |
126762 |
126826 |
+ |
(TCT)n |
Simple_repeat |
| scaffold32979 |
126827 |
126893 |
+ |
(TCA)n |
Simple_repeat |
| scaffold32979 |
126894 |
126916 |
+ |
(TCT)n |
Simple_repeat |
| scaffold32979 |
128493 |
128681 |
- |
RS6649 |
Unspecified |
| scaffold32979 |
129147 |
129833 |
+ |
RS1315 |
Unspecified |
| scaffold32979 |
131605 |
131827 |
+ |
RS49 |
Unspecified |
| scaffold32979 |
134994 |
135017 |
+ |
(T)n |
Simple_repeat |
| scaffold32979 |
135218 |
135246 |
+ |
(T)n |
Simple_repeat |
| scaffold32979 |
135251 |
135293 |
+ |
(TTCAA)n |
Simple_repeat |
| scaffold32979 |
136039 |
136080 |
+ |
(AATTC)n |
Simple_repeat |
| scaffold32979 |
136273 |
136342 |
+ |
A-rich |
Low_complexity |
| scaffold32979 |
136398 |
136435 |
+ |
(AATGGAG)n |
Simple_repeat |